data_7LV # _chem_comp.id 7LV _chem_comp.name "9-(3,5-dichloro-4-hydroxyphenyl)-1-{trans-4-[(dimethylamino)methyl]cyclohexyl}-3-methyl-3,4-dihydropyrimido[5,4-c][1,5]naphthyridin-2(1H)-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H29 Cl2 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-11-15 _chem_comp.pdbx_modified_date 2017-11-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 514.447 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 7LV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5TVT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7LV C1 C1 C 0 1 N N N 3.745 84.706 7.217 -1.383 -5.708 -0.171 C1 7LV 1 7LV C2 C2 C 0 1 N N N 4.723 82.511 7.037 -1.919 -3.403 -0.681 C2 7LV 2 7LV C3 C3 C 0 1 N N N 3.918 82.282 5.762 -0.459 -2.947 -0.623 C3 7LV 3 7LV C4 C4 C 0 1 N N N 4.887 81.954 4.632 -0.240 -1.810 -1.624 C4 7LV 4 7LV C5 C5 C 0 1 N N N 4.141 81.742 3.322 1.219 -1.354 -1.567 C5 7LV 5 7LV C6 C6 C 0 1 N N N 3.177 80.575 3.496 1.544 -0.861 -0.155 C6 7LV 6 7LV O1 O1 O 0 1 N N N 8.254 77.387 8.195 -5.424 0.688 0.039 O1 7LV 7 7LV N1 N1 N 0 1 N N N 2.458 80.231 2.255 2.941 -0.424 -0.101 N1 7LV 8 7LV C7 C7 C 0 1 N N N 2.201 80.835 4.648 1.325 -1.997 0.845 C7 7LV 9 7LV C8 C8 C 0 1 N N N 2.936 81.131 5.952 -0.134 -2.453 0.788 C8 7LV 10 7LV N2 N2 N 0 1 N N N 0.831 80.884 0.510 5.216 -1.044 -0.178 N2 7LV 11 7LV CL1 CL1 CL 0 0 N N N 7.581 74.437 7.486 -5.011 3.407 -1.034 CL1 7LV 12 7LV C24 C9 C 0 1 Y N N 7.088 75.906 6.587 -3.788 2.363 -0.380 C24 7LV 13 7LV C23 C10 C 0 1 Y N N 7.499 77.241 7.074 -4.131 1.102 0.091 C23 7LV 14 7LV C22 C11 C 0 1 Y N N 7.068 78.420 6.295 -3.155 0.264 0.614 C22 7LV 15 7LV CL CL2 CL 0 0 N N N 7.528 80.061 6.824 -3.588 -1.311 1.202 CL 7LV 16 7LV C21 C12 C 0 1 Y N N 6.304 78.241 5.154 -1.841 0.682 0.668 C21 7LV 17 7LV C25 C13 C 0 1 Y N N 6.321 75.820 5.430 -2.475 2.785 -0.334 C25 7LV 18 7LV C20 C14 C 0 1 Y N N 5.947 76.967 4.732 -1.493 1.947 0.196 C20 7LV 19 7LV C17 C15 C 0 1 Y N N 5.116 76.850 3.511 -0.083 2.400 0.253 C17 7LV 20 7LV C16 C16 C 0 1 Y N N 5.159 75.680 2.763 0.195 3.765 0.425 C16 7LV 21 7LV C15 C17 C 0 1 Y N N 4.378 75.564 1.625 1.488 4.193 0.479 C15 7LV 22 7LV N4 N3 N 0 1 Y N N 4.330 77.896 3.163 0.886 1.511 0.142 N4 7LV 23 7LV C18 C18 C 0 1 Y N N 3.535 77.860 2.069 2.167 1.876 0.189 C18 7LV 24 7LV C14 C19 C 0 1 Y N N 3.563 76.621 1.247 2.518 3.237 0.359 C14 7LV 25 7LV N3 N4 N 0 1 Y N N 2.808 76.495 0.140 3.802 3.604 0.406 N3 7LV 26 7LV C13 C20 C 0 1 Y N N 1.996 77.464 -0.285 4.776 2.727 0.295 C13 7LV 27 7LV C19 C21 C 0 1 Y N N 2.630 78.969 1.616 3.206 0.924 0.069 C19 7LV 28 7LV C12 C22 C 0 1 Y N N 1.859 78.678 0.374 4.512 1.379 0.126 C12 7LV 29 7LV C11 C23 C 0 1 N N N 0.937 79.626 -0.218 5.621 0.361 -0.001 C11 7LV 30 7LV C10 C24 C 0 1 N N N -0.077 81.905 -0.017 6.226 -2.097 -0.314 C10 7LV 31 7LV C9 C25 C 0 1 N N N 1.555 81.164 1.684 3.905 -1.348 -0.211 C9 7LV 32 7LV O O2 O 0 1 N N N 1.362 82.286 2.200 3.582 -2.511 -0.357 O 7LV 33 7LV N N5 N 0 1 N N N 4.045 83.457 7.934 -2.122 -4.514 0.259 N 7LV 34 7LV C C26 C 0 1 N N N 4.935 83.758 9.065 -3.552 -4.809 0.423 C 7LV 35 7LV H1 H1 H 0 1 N N N 3.238 85.407 7.897 -0.329 -5.459 -0.294 H1 7LV 36 7LV H2 H2 H 0 1 N N N 4.682 85.157 6.858 -1.486 -6.489 0.583 H2 7LV 37 7LV H3 H3 H 0 1 N N N 3.091 84.489 6.360 -1.786 -6.063 -1.119 H3 7LV 38 7LV H4 H4 H 0 1 N N N 4.849 81.551 7.558 -2.570 -2.572 -0.408 H4 7LV 39 7LV H5 H5 H 0 1 N N N 5.710 82.916 6.770 -2.156 -3.734 -1.692 H5 7LV 40 7LV H6 H6 H 0 1 N N N 3.362 83.198 5.512 0.193 -3.783 -0.875 H6 7LV 41 7LV H7 H7 H 0 1 N N N 5.438 81.036 4.885 -0.472 -2.162 -2.630 H7 7LV 42 7LV H8 H8 H 0 1 N N N 5.596 82.787 4.512 -0.893 -0.974 -1.373 H8 7LV 43 7LV H9 H9 H 0 1 N N N 4.858 81.514 2.520 1.871 -2.191 -1.818 H9 7LV 44 7LV H10 H10 H 0 1 N N N 3.579 82.652 3.064 1.375 -0.545 -2.280 H10 7LV 45 7LV H11 H11 H 0 1 N N N 3.781 79.701 3.781 0.892 -0.024 0.096 H11 7LV 46 7LV H12 H12 H 0 1 N N N 8.438 76.532 8.567 -5.658 0.229 -0.779 H12 7LV 47 7LV H13 H13 H 0 1 N N N 1.568 81.697 4.392 1.977 -2.833 0.594 H13 7LV 48 7LV H14 H14 H 0 1 N N N 1.570 79.945 4.788 1.556 -1.646 1.851 H14 7LV 49 7LV H15 H15 H 0 1 N N N 2.204 81.404 6.726 -0.787 -1.617 1.039 H15 7LV 50 7LV H16 H16 H 0 1 N N N 3.487 80.233 6.269 -0.290 -3.263 1.501 H16 7LV 51 7LV H17 H17 H 0 1 N N N 5.982 79.101 4.586 -1.082 0.030 1.076 H17 7LV 52 7LV H18 H18 H 0 1 N N N 6.011 74.851 5.067 -2.209 3.765 -0.700 H18 7LV 53 7LV H19 H19 H 0 1 N N N 5.798 74.865 3.067 -0.614 4.475 0.515 H19 7LV 54 7LV H20 H20 H 0 1 N N N 4.403 74.658 1.037 1.718 5.240 0.610 H20 7LV 55 7LV H21 H21 H 0 1 N N N 1.419 77.297 -1.182 5.801 3.065 0.338 H21 7LV 56 7LV H22 H22 H 0 1 N N N 1.277 79.846 -1.241 6.239 0.423 0.894 H22 7LV 57 7LV H23 H23 H 0 1 N N N -0.060 79.162 -0.254 6.240 0.643 -0.853 H23 7LV 58 7LV H24 H24 H 0 1 N N N -0.050 82.791 0.634 5.732 -3.061 -0.434 H24 7LV 59 7LV H25 H25 H 0 1 N N N 0.238 82.186 -1.033 6.846 -1.895 -1.188 H25 7LV 60 7LV H26 H26 H 0 1 N N N -1.101 81.504 -0.048 6.852 -2.118 0.578 H26 7LV 61 7LV H28 H28 H 0 1 N N N 4.438 84.466 9.745 -3.674 -5.635 1.124 H28 7LV 62 7LV H29 H29 H 0 1 N N N 5.165 82.829 9.608 -4.063 -3.927 0.809 H29 7LV 63 7LV H30 H30 H 0 1 N N N 5.868 84.204 8.689 -3.979 -5.084 -0.541 H30 7LV 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7LV C13 N3 DOUB Y N 1 7LV C13 C12 SING Y N 2 7LV C11 C12 SING N N 3 7LV C11 N2 SING N N 4 7LV C10 N2 SING N N 5 7LV N3 C14 SING Y N 6 7LV C12 C19 DOUB Y N 7 7LV N2 C9 SING N N 8 7LV C14 C15 DOUB Y N 9 7LV C14 C18 SING Y N 10 7LV C19 C18 SING Y N 11 7LV C19 N1 SING N N 12 7LV C15 C16 SING Y N 13 7LV C9 O DOUB N N 14 7LV C9 N1 SING N N 15 7LV C18 N4 DOUB Y N 16 7LV N1 C6 SING N N 17 7LV C16 C17 DOUB Y N 18 7LV N4 C17 SING Y N 19 7LV C5 C6 SING N N 20 7LV C5 C4 SING N N 21 7LV C6 C7 SING N N 22 7LV C17 C20 SING N N 23 7LV C4 C3 SING N N 24 7LV C7 C8 SING N N 25 7LV C20 C21 DOUB Y N 26 7LV C20 C25 SING Y N 27 7LV C21 C22 SING Y N 28 7LV C25 C24 DOUB Y N 29 7LV C3 C8 SING N N 30 7LV C3 C2 SING N N 31 7LV C22 CL SING N N 32 7LV C22 C23 DOUB Y N 33 7LV C24 C23 SING Y N 34 7LV C24 CL1 SING N N 35 7LV C2 N SING N N 36 7LV C23 O1 SING N N 37 7LV C1 N SING N N 38 7LV N C SING N N 39 7LV C1 H1 SING N N 40 7LV C1 H2 SING N N 41 7LV C1 H3 SING N N 42 7LV C2 H4 SING N N 43 7LV C2 H5 SING N N 44 7LV C3 H6 SING N N 45 7LV C4 H7 SING N N 46 7LV C4 H8 SING N N 47 7LV C5 H9 SING N N 48 7LV C5 H10 SING N N 49 7LV C6 H11 SING N N 50 7LV O1 H12 SING N N 51 7LV C7 H13 SING N N 52 7LV C7 H14 SING N N 53 7LV C8 H15 SING N N 54 7LV C8 H16 SING N N 55 7LV C21 H17 SING N N 56 7LV C25 H18 SING N N 57 7LV C16 H19 SING N N 58 7LV C15 H20 SING N N 59 7LV C13 H21 SING N N 60 7LV C11 H22 SING N N 61 7LV C11 H23 SING N N 62 7LV C10 H24 SING N N 63 7LV C10 H25 SING N N 64 7LV C10 H26 SING N N 65 7LV C H28 SING N N 66 7LV C H29 SING N N 67 7LV C H30 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7LV SMILES ACDLabs 12.01 "CN(CC1CCC(CC1)N5c4c3nc(c2cc(c(O)c(Cl)c2)Cl)ccc3ncc4CN(C5=O)C)C" 7LV InChI InChI 1.03 "InChI=1S/C26H29Cl2N5O2/c1-31(2)13-15-4-6-18(7-5-15)33-24-17(14-32(3)26(33)35)12-29-22-9-8-21(30-23(22)24)16-10-19(27)25(34)20(28)11-16/h8-12,15,18,34H,4-7,13-14H2,1-3H3/t15-,18-" 7LV InChIKey InChI 1.03 HHDFQGMZNYJMHI-RZDIXWSQSA-N 7LV SMILES_CANONICAL CACTVS 3.385 "CN(C)C[C@H]1CC[C@@H](CC1)N2C(=O)N(C)Cc3cnc4ccc(nc4c23)c5cc(Cl)c(O)c(Cl)c5" 7LV SMILES CACTVS 3.385 "CN(C)C[CH]1CC[CH](CC1)N2C(=O)N(C)Cc3cnc4ccc(nc4c23)c5cc(Cl)c(O)c(Cl)c5" 7LV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CN1Cc2cnc3ccc(nc3c2N(C1=O)C4CCC(CC4)CN(C)C)c5cc(c(c(c5)Cl)O)Cl" 7LV SMILES "OpenEye OEToolkits" 2.0.6 "CN1Cc2cnc3ccc(nc3c2N(C1=O)C4CCC(CC4)CN(C)C)c5cc(c(c(c5)Cl)O)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 7LV "SYSTEMATIC NAME" ACDLabs 12.01 "9-(3,5-dichloro-4-hydroxyphenyl)-1-{trans-4-[(dimethylamino)methyl]cyclohexyl}-3-methyl-3,4-dihydropyrimido[5,4-c][1,5]naphthyridin-2(1H)-one" 7LV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "9-[3,5-bis(chloranyl)-4-oxidanyl-phenyl]-1-[4-[(dimethylamino)methyl]cyclohexyl]-3-methyl-4~{H}-pyrimido[5,4-c][1,5]naphthyridin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7LV "Create component" 2016-11-15 RCSB 7LV "Initial release" 2017-11-15 RCSB #