data_7M8 # _chem_comp.id 7M8 _chem_comp.name "6-(3-oxidanylpropyl)-2-(1,3,6-trimethyl-2-oxidanylidene-benzimidazol-5-yl)benzo[de]isoquinoline-1,3-dione" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H23 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-11-20 _chem_comp.pdbx_modified_date 2017-04-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 429.468 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 7M8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5MG2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7M8 C1 C1 C 0 1 Y N N 23.014 68.598 17.401 3.507 2.832 -0.078 C1 7M8 1 7M8 C2 C2 C 0 1 Y N N 22.310 69.676 16.888 2.138 2.723 0.133 C2 7M8 2 7M8 C3 C3 C 0 1 Y N N 21.044 69.958 17.345 1.512 1.490 0.027 C3 7M8 3 7M8 C4 C4 C 0 1 Y N N 20.453 69.151 18.347 2.287 0.353 -0.299 C4 7M8 4 7M8 C8 C5 C 0 1 N N N 20.341 65.082 21.279 6.637 -0.649 0.277 C8 7M8 5 7M8 C9 C6 C 0 1 N N N 20.967 63.731 21.494 8.145 -0.543 0.042 C9 7M8 6 7M8 C10 C7 C 0 1 Y N N 19.170 69.452 18.860 1.659 -0.909 -0.411 C10 7M8 7 7M8 C11 C8 C 0 1 Y N N 18.594 68.630 19.801 2.428 -2.018 -0.730 C11 7M8 8 7M8 C12 C9 C 0 1 Y N N 19.264 67.512 20.269 3.796 -1.883 -0.937 C12 7M8 9 7M8 C13 C10 C 0 1 N N N 18.429 70.630 18.363 0.210 -0.998 -0.183 C13 7M8 10 7M8 C14 C11 C 0 1 Y N N 18.217 72.339 16.665 -1.880 -0.019 0.338 C14 7M8 11 7M8 C15 C12 C 0 1 Y N N 18.200 73.645 17.161 -2.366 -0.281 1.613 C15 7M8 12 7M8 C16 C13 C 0 1 Y N N 17.439 74.597 16.478 -3.724 -0.403 1.828 C16 7M8 13 7M8 C17 C14 C 0 1 Y N N 16.711 74.219 15.354 -4.608 -0.263 0.768 C17 7M8 14 7M8 C18 C15 C 0 1 Y N N 16.731 72.910 14.899 -4.123 0.001 -0.514 C18 7M8 15 7M8 C19 C16 C 0 1 Y N N 17.486 71.950 15.543 -2.759 0.128 -0.725 C19 7M8 16 7M8 C20 C17 C 0 1 N N N 15.353 74.089 13.524 -6.339 -0.115 -0.617 C20 7M8 17 7M8 C21 C18 C 0 1 N N N 15.542 76.356 14.601 -6.925 -0.587 1.771 C21 7M8 18 7M8 C24 C19 C 0 1 N N N 20.297 71.103 16.780 0.068 1.321 0.240 C24 7M8 19 7M8 O3 O1 O 0 1 N N N 20.727 71.796 15.871 -0.619 2.284 0.521 O3 7M8 20 7M8 N N1 N 0 1 N N N 19.027 71.350 17.319 -0.500 0.105 0.126 N 7M8 21 7M8 O2 O2 O 0 1 N N N 17.381 71.018 18.860 -0.352 -2.072 -0.274 O2 7M8 22 7M8 C6 C20 C 0 1 Y N N 20.527 67.193 19.827 4.420 -0.672 -0.833 C6 7M8 23 7M8 C7 C21 C 0 1 N N N 21.229 65.973 20.385 5.905 -0.568 -1.064 C7 7M8 24 7M8 O O3 O 0 1 N N N 22.267 63.972 21.960 8.829 -0.619 1.294 O 7M8 25 7M8 C5 C22 C 0 1 Y N N 21.154 68.026 18.846 3.676 0.477 -0.512 C5 7M8 26 7M8 C C23 C 0 1 Y N N 22.459 67.782 18.349 4.271 1.745 -0.393 C 7M8 27 7M8 N1 N2 N 0 1 N N N 15.901 72.844 13.775 -5.231 0.087 -1.354 N1 7M8 28 7M8 C22 C24 C 0 1 N N N 15.664 71.655 12.963 -5.196 0.353 -2.794 C22 7M8 29 7M8 O1 O4 O 0 1 N N N 14.563 74.383 12.645 -7.477 -0.105 -1.046 O1 7M8 30 7M8 N2 N3 N 0 1 N N N 15.863 74.935 14.503 -5.997 -0.329 0.668 N2 7M8 31 7M8 C23 C25 C 0 1 N N N 18.930 74.027 18.424 -1.407 -0.434 2.766 C23 7M8 32 7M8 H1 H1 H 0 1 N N N 24.015 68.399 17.047 3.978 3.800 0.005 H1 7M8 33 7M8 H2 H2 H 0 1 N N N 22.758 70.297 16.126 1.559 3.601 0.382 H2 7M8 34 7M8 H3 H3 H 0 1 N N N 20.205 65.574 22.254 6.410 -1.601 0.757 H3 7M8 35 7M8 H4 H4 H 0 1 N N N 19.362 64.951 20.795 6.311 0.169 0.919 H4 7M8 36 7M8 H5 H5 H 0 1 N N N 20.394 63.160 22.240 8.471 -1.361 -0.601 H5 7M8 37 7M8 H6 H6 H 0 1 N N N 20.999 63.171 20.548 8.372 0.408 -0.439 H6 7M8 38 7M8 H7 H7 H 0 1 N N N 17.609 68.859 20.179 1.963 -2.988 -0.819 H7 7M8 39 7M8 H8 H8 H 0 1 N N N 18.784 66.876 20.998 4.381 -2.757 -1.184 H8 7M8 40 7M8 H9 H9 H 0 1 N N N 17.416 75.621 16.821 -4.098 -0.608 2.820 H9 7M8 41 7M8 H10 H10 H 0 1 N N N 17.510 70.930 15.189 -2.381 0.332 -1.716 H10 7M8 42 7M8 H11 H11 H 0 1 N N N 16.073 76.794 15.459 -7.948 -0.580 1.394 H11 7M8 43 7M8 H12 H12 H 0 1 N N N 15.853 76.867 13.678 -6.707 -1.561 2.210 H12 7M8 44 7M8 H13 H13 H 0 1 N N N 14.458 76.478 14.740 -6.812 0.187 2.530 H13 7M8 45 7M8 H14 H14 H 0 1 N N N 21.587 65.366 19.541 6.132 0.384 -1.545 H14 7M8 46 7M8 H15 H15 H 0 1 N N N 22.088 66.313 20.982 6.231 -1.386 -1.707 H15 7M8 47 7M8 H16 H16 H 0 1 N N N 22.708 63.144 22.112 9.791 -0.559 1.221 H16 7M8 48 7M8 H17 H17 H 0 1 N N N 23.023 66.941 18.724 5.333 1.860 -0.556 H17 7M8 49 7M8 H18 H18 H 0 1 N N N 16.220 70.805 13.386 -6.213 0.363 -3.187 H18 7M8 50 7M8 H19 H19 H 0 1 N N N 14.589 71.423 12.957 -4.728 1.321 -2.974 H19 7M8 51 7M8 H20 H20 H 0 1 N N N 16.005 71.840 11.934 -4.622 -0.427 -3.294 H20 7M8 52 7M8 H21 H21 H 0 1 N N N 18.269 73.877 19.290 -1.237 0.538 3.228 H21 7M8 53 7M8 H22 H22 H 0 1 N N N 19.826 73.399 18.534 -1.829 -1.117 3.502 H22 7M8 54 7M8 H23 H23 H 0 1 N N N 19.228 75.084 18.370 -0.461 -0.833 2.400 H23 7M8 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7M8 O1 C20 DOUB N N 1 7M8 C22 N1 SING N N 2 7M8 C20 N1 SING N N 3 7M8 C20 N2 SING N N 4 7M8 N1 C18 SING N N 5 7M8 N2 C21 SING N N 6 7M8 N2 C17 SING N N 7 7M8 C18 C17 DOUB Y N 8 7M8 C18 C19 SING Y N 9 7M8 C17 C16 SING Y N 10 7M8 C19 C14 DOUB Y N 11 7M8 O3 C24 DOUB N N 12 7M8 C16 C15 DOUB Y N 13 7M8 C14 C15 SING Y N 14 7M8 C14 N SING N N 15 7M8 C24 N SING N N 16 7M8 C24 C3 SING N N 17 7M8 C2 C3 DOUB Y N 18 7M8 C2 C1 SING Y N 19 7M8 C15 C23 SING N N 20 7M8 N C13 SING N N 21 7M8 C3 C4 SING Y N 22 7M8 C1 C DOUB Y N 23 7M8 C4 C5 DOUB Y N 24 7M8 C4 C10 SING Y N 25 7M8 C C5 SING Y N 26 7M8 C13 C10 SING N N 27 7M8 C13 O2 DOUB N N 28 7M8 C5 C6 SING Y N 29 7M8 C10 C11 DOUB Y N 30 7M8 C11 C12 SING Y N 31 7M8 C6 C12 DOUB Y N 32 7M8 C6 C7 SING N N 33 7M8 C7 C8 SING N N 34 7M8 C8 C9 SING N N 35 7M8 C9 O SING N N 36 7M8 C1 H1 SING N N 37 7M8 C2 H2 SING N N 38 7M8 C8 H3 SING N N 39 7M8 C8 H4 SING N N 40 7M8 C9 H5 SING N N 41 7M8 C9 H6 SING N N 42 7M8 C11 H7 SING N N 43 7M8 C12 H8 SING N N 44 7M8 C16 H9 SING N N 45 7M8 C19 H10 SING N N 46 7M8 C21 H11 SING N N 47 7M8 C21 H12 SING N N 48 7M8 C21 H13 SING N N 49 7M8 C7 H14 SING N N 50 7M8 C7 H15 SING N N 51 7M8 O H16 SING N N 52 7M8 C H17 SING N N 53 7M8 C22 H18 SING N N 54 7M8 C22 H19 SING N N 55 7M8 C22 H20 SING N N 56 7M8 C23 H21 SING N N 57 7M8 C23 H22 SING N N 58 7M8 C23 H23 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7M8 InChI InChI 1.03 "InChI=1S/C25H23N3O4/c1-14-12-20-21(27(3)25(32)26(20)2)13-19(14)28-23(30)17-8-4-7-16-15(6-5-11-29)9-10-18(22(16)17)24(28)31/h4,7-10,12-13,29H,5-6,11H2,1-3H3" 7M8 InChIKey InChI 1.03 OFWWWKWUCDUISA-UHFFFAOYSA-N 7M8 SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)N(C)c2cc(N3C(=O)c4cccc5c(CCCO)ccc(C3=O)c45)c(C)cc12" 7M8 SMILES CACTVS 3.385 "CN1C(=O)N(C)c2cc(N3C(=O)c4cccc5c(CCCO)ccc(C3=O)c45)c(C)cc12" 7M8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1cc2c(cc1N3C(=O)c4cccc5c4c(ccc5CCCO)C3=O)N(C(=O)N2C)C" 7M8 SMILES "OpenEye OEToolkits" 2.0.6 "Cc1cc2c(cc1N3C(=O)c4cccc5c4c(ccc5CCCO)C3=O)N(C(=O)N2C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 7M8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "6-(3-oxidanylpropyl)-2-(1,3,6-trimethyl-2-oxidanylidene-benzimidazol-5-yl)benzo[de]isoquinoline-1,3-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7M8 "Create component" 2016-11-20 RCSB 7M8 "Initial release" 2017-05-03 RCSB #