data_7NO # _chem_comp.id 7NO _chem_comp.name "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-2-(phosphonooxymethyl)oxolan-3-yl] (2~{S})-2-azanyl-4-methylsulfanyl-butanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H23 N6 O8 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-08-09 _chem_comp.pdbx_modified_date 2022-07-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 478.417 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 7NO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6GSM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7NO N1 N1 N 0 1 Y N N 297.470 158.629 197.139 -5.774 3.466 -0.679 N1 7NO 1 7NO N3 N2 N 0 1 Y N N 296.109 159.397 195.298 -3.554 2.842 -0.838 N3 7NO 2 7NO C4 C1 C 0 1 Y N N 295.384 160.025 196.242 -3.832 1.599 -0.457 C4 7NO 3 7NO C5 C2 C 0 1 Y N N 295.613 160.010 197.607 -5.163 1.256 -0.166 C5 7NO 4 7NO C6 C3 C 0 1 Y N N 296.721 159.272 198.062 -6.147 2.251 -0.292 C6 7NO 5 7NO C8 C4 C 0 1 Y N N 293.894 161.223 197.313 -3.956 -0.520 0.140 C8 7NO 6 7NO P P1 P 0 1 N N N 287.668 160.421 193.887 0.368 -5.126 -0.083 P 7NO 7 7NO OP1 O1 O 0 1 N N N 286.599 161.131 193.130 1.727 -5.331 0.467 OP1 7NO 8 7NO OP2 O2 O 0 1 N N N 288.108 159.072 193.449 -0.727 -5.546 1.021 OP2 7NO 9 7NO "O5'" O3 O 0 1 N N N 288.950 161.365 193.935 0.173 -3.576 -0.469 "O5'" 7NO 10 7NO "C5'" C5 C 0 1 N N N 290.098 161.083 194.777 0.382 -2.510 0.460 "C5'" 7NO 11 7NO "C4'" C6 C 0 1 N N R 291.379 161.509 194.086 0.112 -1.171 -0.230 "C4'" 7NO 12 7NO "C3'" C7 C 0 1 N N S 292.009 160.476 193.147 0.437 -0.012 0.732 "C3'" 7NO 13 7NO "O3'" O4 O 0 1 N N N 292.473 161.120 191.952 1.475 0.836 0.173 "O3'" 7NO 14 7NO "C2'" C8 C 0 1 N N R 293.160 159.908 193.979 -0.895 0.769 0.848 "C2'" 7NO 15 7NO "O2'" O5 O 0 1 N N N 294.237 159.398 193.216 -0.662 2.179 0.836 "O2'" 7NO 16 7NO "C1'" C9 C 0 1 N N R 293.593 161.130 194.790 -1.647 0.322 -0.432 "C1'" 7NO 17 7NO "O4'" O6 O 0 1 N N N 292.396 161.831 195.083 -1.281 -1.068 -0.568 "O4'" 7NO 18 7NO N9 N3 N 0 1 Y N N 294.265 160.804 196.058 -3.094 0.460 -0.255 N9 7NO 19 7NO N7 N4 N 0 1 Y N N 294.662 160.769 198.273 -5.169 -0.051 0.192 N7 7NO 20 7NO C2 C10 C 0 1 Y N N 297.123 158.731 195.850 -4.509 3.741 -0.941 C2 7NO 21 7NO N6 N5 N 0 1 N N N 297.064 159.170 199.348 -7.475 1.972 -0.019 N6 7NO 22 7NO N N6 N 0 1 N N N 294.320 163.798 190.744 3.686 3.395 1.577 N 7NO 23 7NO CA C11 C 0 1 N N S 292.883 163.636 190.788 3.332 2.422 0.535 CA 7NO 24 7NO CB C12 C 0 1 N N N 292.226 164.316 189.582 4.561 1.580 0.185 CB 7NO 25 7NO CG C13 C 0 1 N N N 292.173 165.839 189.679 5.630 2.475 -0.444 CG 7NO 26 7NO SD S1 S 0 1 N N N 291.392 166.412 191.196 7.087 1.477 -0.859 SD 7NO 27 7NO CE C14 C 0 1 N N N 289.664 166.050 190.847 8.223 2.693 -1.581 CE 7NO 28 7NO C C15 C 0 1 N N N 292.571 162.150 190.853 2.234 1.522 1.041 C 7NO 29 7NO O O7 O 0 1 N N N 292.952 161.370 189.996 2.037 1.418 2.229 O 7NO 30 7NO O1 O8 O 0 1 N Y N 287.226 160.326 195.438 0.179 -6.035 -1.398 O1 7NO 31 7NO H1 H1 H 0 1 N N N 293.046 161.868 197.492 -3.673 -1.535 0.376 H1 7NO 32 7NO H2 H2 H 0 1 N N N 287.614 158.811 192.681 -1.642 -5.437 0.729 H2 7NO 33 7NO H3 H3 H 0 1 N N N 289.997 161.634 195.724 -0.298 -2.627 1.305 H3 7NO 34 7NO H4 H4 H 0 1 N N N 290.139 160.003 194.983 1.411 -2.534 0.816 H4 7NO 35 7NO H5 H5 H 0 1 N N N 291.163 162.412 193.497 0.719 -1.090 -1.131 H5 7NO 36 7NO H6 H6 H 0 1 N N N 291.282 159.683 192.919 0.739 -0.396 1.705 H6 7NO 37 7NO H7 H7 H 0 1 N N N 292.768 159.141 194.663 -1.442 0.474 1.743 H7 7NO 38 7NO H8 H8 H 0 1 N N N 294.909 159.065 193.799 -1.467 2.711 0.906 H8 7NO 39 7NO H9 H9 H 0 1 N N N 294.257 161.750 194.170 -1.308 0.894 -1.296 H9 7NO 40 7NO H10 H10 H 0 1 N N N 297.756 158.196 195.157 -4.249 4.742 -1.253 H10 7NO 41 7NO H11 H11 H 0 1 N N N 297.877 158.594 199.432 -8.145 2.667 -0.109 H11 7NO 42 7NO H12 H12 H 0 1 N N N 297.261 160.080 199.714 -7.735 1.081 0.263 H12 7NO 43 7NO H13 H13 H 0 1 N N N 294.731 163.349 191.537 2.909 4.006 1.780 H13 7NO 44 7NO H14 H14 H 0 1 N N N 294.676 163.385 189.906 4.009 2.930 2.412 H14 7NO 45 7NO H16 H16 H 0 1 N N N 292.493 164.110 191.701 2.988 2.950 -0.354 H16 7NO 46 7NO H17 H17 H 0 1 N N N 291.197 163.939 189.491 4.958 1.122 1.092 H17 7NO 47 7NO H18 H18 H 0 1 N N N 292.796 164.047 188.680 4.278 0.800 -0.521 H18 7NO 48 7NO H19 H19 H 0 1 N N N 293.201 166.230 189.643 5.233 2.933 -1.350 H19 7NO 49 7NO H20 H20 H 0 1 N N N 291.603 166.227 188.822 5.913 3.255 0.263 H20 7NO 50 7NO H21 H21 H 0 1 N N N 289.045 166.352 191.705 7.761 3.145 -2.459 H21 7NO 51 7NO H22 H22 H 0 1 N N N 289.347 166.605 189.952 8.441 3.467 -0.846 H22 7NO 52 7NO H23 H23 H 0 1 N N N 289.544 164.971 190.671 9.149 2.197 -1.872 H23 7NO 53 7NO H24 H24 H 0 1 N N N 286.379 160.740 195.552 0.282 -6.983 -1.240 H24 7NO 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7NO CB CG SING N N 1 7NO CB CA SING N N 2 7NO CG SD SING N N 3 7NO O C DOUB N N 4 7NO N CA SING N N 5 7NO CA C SING N N 6 7NO CE SD SING N N 7 7NO C "O3'" SING N N 8 7NO "O3'" "C3'" SING N N 9 7NO OP1 P DOUB N N 10 7NO "C3'" "C2'" SING N N 11 7NO "C3'" "C4'" SING N N 12 7NO "O2'" "C2'" SING N N 13 7NO OP2 P SING N N 14 7NO P "O5'" SING N N 15 7NO "O5'" "C5'" SING N N 16 7NO "C2'" "C1'" SING N N 17 7NO "C4'" "C5'" SING N N 18 7NO "C4'" "O4'" SING N N 19 7NO "C1'" "O4'" SING N N 20 7NO "C1'" N9 SING N N 21 7NO N3 C2 DOUB Y N 22 7NO N3 C4 SING Y N 23 7NO C2 N1 SING Y N 24 7NO N9 C4 SING Y N 25 7NO N9 C8 SING Y N 26 7NO C4 C5 DOUB Y N 27 7NO N1 C6 DOUB Y N 28 7NO C8 N7 DOUB Y N 29 7NO C5 C6 SING Y N 30 7NO C5 N7 SING Y N 31 7NO C6 N6 SING N N 32 7NO P O1 SING N N 33 7NO C8 H1 SING N N 34 7NO OP2 H2 SING N N 35 7NO "C5'" H3 SING N N 36 7NO "C5'" H4 SING N N 37 7NO "C4'" H5 SING N N 38 7NO "C3'" H6 SING N N 39 7NO "C2'" H7 SING N N 40 7NO "O2'" H8 SING N N 41 7NO "C1'" H9 SING N N 42 7NO C2 H10 SING N N 43 7NO N6 H11 SING N N 44 7NO N6 H12 SING N N 45 7NO N H13 SING N N 46 7NO N H14 SING N N 47 7NO CA H16 SING N N 48 7NO CB H17 SING N N 49 7NO CB H18 SING N N 50 7NO CG H19 SING N N 51 7NO CG H20 SING N N 52 7NO CE H21 SING N N 53 7NO CE H22 SING N N 54 7NO CE H23 SING N N 55 7NO O1 H24 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7NO InChI InChI 1.03 "InChI=1S/C15H23N6O8PS/c1-31-3-2-7(16)15(23)29-11-8(4-27-30(24,25)26)28-14(10(11)22)21-6-20-9-12(17)18-5-19-13(9)21/h5-8,10-11,14,22H,2-4,16H2,1H3,(H2,17,18,19)(H2,24,25,26)/t7-,8+,10+,11+,14+/m0/s1" 7NO InChIKey InChI 1.03 QTJGZHBCXHRMIV-TWBCTODHSA-N 7NO SMILES_CANONICAL CACTVS 3.385 "CSCC[C@H](N)C(=O)O[C@@H]1[C@@H](CO[P](O)(O)=O)O[C@H]([C@@H]1O)n2cnc3c(N)ncnc23" 7NO SMILES CACTVS 3.385 "CSCC[CH](N)C(=O)O[CH]1[CH](CO[P](O)(O)=O)O[CH]([CH]1O)n2cnc3c(N)ncnc23" 7NO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CSCC[C@@H](C(=O)O[C@@H]1[C@H](O[C@H]([C@@H]1O)n2cnc3c2ncnc3N)COP(=O)(O)O)N" 7NO SMILES "OpenEye OEToolkits" 2.0.7 "CSCCC(C(=O)OC1C(OC(C1O)n2cnc3c2ncnc3N)COP(=O)(O)O)N" # _pdbx_chem_comp_identifier.comp_id 7NO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-2-(phosphonooxymethyl)oxolan-3-yl] (2~{S})-2-azanyl-4-methylsulfanyl-butanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7NO "Create component" 2021-08-09 PDBE 7NO "Initial release" 2022-07-20 RCSB #