data_7ON # _chem_comp.id 7ON _chem_comp.name "Leritrelvir bound form" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H46 F3 N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-01 _chem_comp.pdbx_modified_date 2026-01-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 641.722 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 7ON _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8IGN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7ON O1 O1 O 0 1 N N N N N N 12.717 -10.249 -8.255 -0.235 -2.572 0.032 O1 7ON 1 7ON O4 O2 O 0 1 N N N N N N 16.908 -12.784 -9.403 1.559 -0.824 0.192 O4 7ON 2 7ON O5 O3 O 0 1 N N N N N N 20.825 -15.625 -9.161 3.388 -0.698 -1.136 O5 7ON 3 7ON N2 N1 N 0 1 N N N N N N 13.938 -9.129 -15.535 -4.111 1.226 -1.308 N2 7ON 4 7ON C1 C1 C 0 1 N N S N N N 13.598 -11.298 -10.292 -1.519 -3.446 -1.826 C1 7ON 5 7ON C3 C2 C 0 1 N N N N N N 12.194 -13.239 -10.006 -1.149 -5.722 -1.168 C3 7ON 6 7ON C4 C3 C 0 1 N N N N N N 12.666 -11.151 -9.104 -0.674 -3.527 -0.575 C4 7ON 7 7ON C5 C4 C 0 1 N N N N N N 13.739 -10.073 -11.175 -2.961 -3.073 -1.475 C5 7ON 8 7ON C6 C5 C 0 1 N N S N N N 14.757 -10.331 -12.286 -3.020 -1.604 -1.054 C6 7ON 9 7ON C21 C6 C 0 1 N N N N N N 15.882 -17.913 -8.541 3.979 3.761 -1.739 C21 7ON 10 7ON C22 C7 C 0 1 N N N N N N 14.624 -17.094 -8.775 2.711 4.617 -1.745 C22 7ON 11 7ON C23 C8 C 0 1 N N N N N N 14.648 -16.404 -10.131 1.482 3.706 -1.738 C23 7ON 12 7ON C31 C9 C 0 1 N N N N N N 21.011 -15.068 -6.864 5.431 -1.472 -0.245 C31 7ON 13 7ON C2 C10 C 0 1 N N N N N N 13.089 -12.533 -11.013 -1.455 -4.872 -2.421 C2 7ON 14 7ON N1 N2 N 0 1 N N N N N N 11.814 -12.162 -9.105 -0.477 -4.812 -0.232 N1 7ON 15 7ON C7 C11 C 0 1 N N R N N N 14.819 -9.185 -13.287 -4.480 -1.182 -0.878 C7 7ON 16 7ON C8 C12 C 0 1 N N N N N N 13.655 -9.097 -14.236 -4.538 0.266 -0.464 C8 7ON 17 7ON O2 O4 O 0 1 N N N N N N 12.555 -8.824 -13.790 -4.970 0.567 0.629 O2 7ON 18 7ON N3 N3 N 0 1 N N N N N N 16.099 -10.522 -11.717 -2.305 -1.429 0.213 N3 7ON 19 7ON C9 C13 C 0 1 N N N N N N 16.784 -11.650 -11.933 -1.400 -0.439 0.345 C9 7ON 20 7ON C10 C14 C 0 1 N N S N N N 18.235 -11.654 -11.471 -0.745 -0.190 1.679 C10 7ON 21 7ON O3 O5 O 0 1 N N N N N N 16.294 -12.640 -12.475 -1.112 0.251 -0.610 O3 7ON 22 7ON N4 N4 N 0 1 N N N N N N 18.578 -12.949 -10.889 0.474 0.608 1.494 N4 7ON 23 7ON C11 C15 C 0 1 N N N N N N 19.756 -13.565 -11.514 0.309 1.893 2.193 C11 7ON 24 7ON C12 C16 C 0 1 N N R N N N 20.407 -12.395 -12.237 -0.750 1.633 3.288 C12 7ON 25 7ON C13 C17 C 0 1 N N S N N N 19.225 -11.497 -12.628 -1.697 0.611 2.585 C13 7ON 26 7ON C14 C18 C 0 1 N N N N N N 21.269 -11.496 -11.336 -0.097 0.795 4.409 C14 7ON 27 7ON C15 C19 C 0 1 N N N N N N 21.026 -10.086 -11.832 -1.207 -0.163 4.884 C15 7ON 28 7ON C16 C20 C 0 1 N N N N N N 19.869 -10.124 -12.816 -2.204 -0.293 3.721 C16 7ON 29 7ON C17 C21 C 0 1 N N N N N N 17.835 -13.447 -9.890 1.564 0.225 0.800 C17 7ON 30 7ON C18 C22 C 0 1 N N S N N N 18.145 -14.854 -9.385 2.789 1.102 0.779 C18 7ON 31 7ON C19 C23 C 0 1 N N N N N N 16.859 -15.651 -9.134 2.770 1.976 -0.477 C19 7ON 32 7ON C20 C24 C 0 1 N N N N N N 17.155 -17.112 -8.811 3.999 2.887 -0.484 C20 7ON 33 7ON C24 C25 C 0 1 N N N N N N 15.906 -15.558 -10.324 1.501 2.832 -0.482 C24 7ON 34 7ON N5 N5 N 0 1 N N N N N N 18.985 -14.779 -8.199 3.990 0.263 0.771 N5 7ON 35 7ON C25 C26 C 0 1 N N N N N N 12.940 -9.458 -16.537 -4.162 2.633 -0.902 C25 7ON 36 7ON C26 C27 C 0 1 N N N N N N 13.458 -9.326 -17.962 -2.867 3.016 -0.157 C26 7ON 37 7ON C27 C28 C 0 1 N N N N N N 14.031 -10.687 -18.295 -1.970 3.644 -1.252 C27 7ON 38 7ON C28 C29 C 0 1 N N N N N N 13.180 -11.678 -17.540 -2.985 4.437 -2.112 C28 7ON 39 7ON C29 C30 C 0 1 N N N N N N 12.468 -10.908 -16.431 -4.237 3.537 -2.145 C29 7ON 40 7ON C30 C31 C 0 1 N N N N N N 20.254 -15.177 -8.193 4.196 -0.609 -0.237 C30 7ON 41 7ON F1 F1 F 0 1 N N N N N N 21.154 -16.250 -6.277 5.422 -2.288 -1.381 F1 7ON 42 7ON F2 F2 F 0 1 N N N N N N 20.375 -14.286 -6.008 6.569 -0.658 -0.265 F2 7ON 43 7ON F3 F3 F 0 1 N N N N N N 22.229 -14.557 -7.016 5.450 -2.271 0.903 F3 7ON 44 7ON O6 O6 O 0 1 N N N N N N 16.051 -9.102 -13.957 -5.092 -1.990 0.129 O6 7ON 45 7ON H1 H1 H 0 1 N N N N N N 14.870 -8.919 -15.832 -3.766 0.985 -2.181 H1 7ON 46 7ON H2 H2 H 0 1 N N N N N N 14.597 -11.536 -9.898 -1.099 -2.722 -2.524 H2 7ON 47 7ON H3 H3 H 0 1 N N N N N N 11.312 -13.675 -10.497 -2.074 -6.097 -0.731 H3 7ON 48 7ON H4 H4 H 0 1 N N N N N N 12.744 -14.028 -9.472 -0.490 -6.552 -1.425 H4 7ON 49 7ON H5 H5 H 0 1 N N N N N N 14.077 -9.223 -10.564 -3.599 -3.228 -2.345 H5 7ON 50 7ON H6 H6 H 0 1 N N N N N N 12.764 -9.836 -11.625 -3.309 -3.701 -0.654 H6 7ON 51 7ON H7 H7 H 0 1 N N N N N N 14.460 -11.245 -12.822 -2.554 -0.987 -1.822 H7 7ON 52 7ON H8 H8 H 0 1 N N N N N N 15.865 -18.786 -9.210 3.993 3.125 -2.625 H8 7ON 53 7ON H9 H9 H 0 1 N N N N N N 15.893 -18.253 -7.495 4.856 4.410 -1.744 H9 7ON 54 7ON H10 H10 H 0 1 N N N N N N 14.544 -16.330 -7.987 2.698 5.252 -0.859 H10 7ON 55 7ON H11 H11 H 0 1 N N N N N N 13.750 -17.761 -8.729 2.697 5.240 -2.639 H11 7ON 56 7ON H12 H12 H 0 1 N N N N N N 13.766 -15.752 -10.213 0.578 4.316 -1.742 H12 7ON 57 7ON H13 H13 H 0 1 N N N N N N 14.612 -17.170 -10.919 1.495 3.071 -2.623 H13 7ON 58 7ON H14 H14 H 0 1 N N N N N N 12.515 -12.249 -11.907 -2.412 -5.155 -2.860 H14 7ON 59 7ON H15 H15 H 0 1 N N N N N N 13.927 -13.182 -11.306 -0.652 -4.953 -3.153 H15 7ON 60 7ON H16 H16 H 0 1 N N N N N N 10.988 -12.184 -8.541 0.041 -5.101 0.535 H16 7ON 61 7ON H18 H18 H 0 1 N N N N N N 16.506 -9.798 -11.160 -2.484 -2.026 0.956 H18 7ON 62 7ON H19 H19 H 0 1 N N N N N N 18.393 -10.848 -10.739 -0.497 -1.141 2.151 H19 7ON 63 7ON H20 H20 H 0 1 N N N N N N 19.462 -14.354 -12.222 1.252 2.200 2.645 H20 7ON 64 7ON H21 H21 H 0 1 N N N N N N 20.432 -13.987 -10.755 -0.042 2.657 1.499 H21 7ON 65 7ON H22 H22 H 0 1 N N N N N N 20.967 -12.728 -13.123 -1.241 2.538 3.647 H22 7ON 66 7ON H23 H23 H 0 1 N N N N N N 18.775 -11.844 -13.570 -2.501 1.092 2.029 H23 7ON 67 7ON H24 H24 H 0 1 N N N N N N 20.960 -11.594 -10.285 0.748 0.230 4.017 H24 7ON 68 7ON H25 H25 H 0 1 N N N N N N 22.332 -11.761 -11.432 0.224 1.440 5.227 H25 7ON 69 7ON H26 H26 H 0 1 N N N N N N 21.929 -9.706 -12.333 -0.782 -1.138 5.122 H26 7ON 70 7ON H27 H27 H 0 1 N N N N N N 20.774 -9.431 -10.985 -1.707 0.250 5.760 H27 7ON 71 7ON H28 H28 H 0 1 N N N N N N 20.236 -10.008 -13.847 -3.193 0.034 4.042 H28 7ON 72 7ON H29 H29 H 0 1 N N N N N N 19.146 -9.325 -12.592 -2.244 -1.328 3.381 H29 7ON 73 7ON H30 H30 H 0 1 N N N N N N 18.706 -15.374 -10.176 2.797 1.738 1.664 H30 7ON 74 7ON H31 H31 H 0 1 N N N N N N 16.354 -15.208 -8.263 2.783 1.341 -1.362 H31 7ON 75 7ON H32 H32 H 0 1 N N N N N N 17.683 -17.563 -9.664 4.903 2.277 -0.480 H32 7ON 76 7ON H33 H33 H 0 1 N N N N N N 17.796 -17.155 -7.918 3.986 3.522 0.402 H33 7ON 77 7ON H34 H34 H 0 1 N N N N N N 16.431 -15.907 -11.225 1.488 3.468 0.403 H34 7ON 78 7ON H35 H35 H 0 1 N N N N N N 15.608 -14.507 -10.457 0.625 2.184 -0.477 H35 7ON 79 7ON H36 H36 H 0 1 N N N N N N 18.592 -14.414 -7.355 4.637 0.335 1.490 H36 7ON 80 7ON H37 H37 H 0 1 N N N N N N 12.068 -8.798 -16.418 -5.027 2.806 -0.262 H37 7ON 81 7ON H38 H38 H 0 1 N N N N N N 14.238 -8.553 -18.020 -3.078 3.743 0.627 H38 7ON 82 7ON H39 H39 H 0 1 N N N N N N 12.638 -9.072 -18.650 -2.393 2.129 0.264 H39 7ON 83 7ON H40 H40 H 0 1 N N N N N N 13.971 -10.875 -19.377 -1.232 4.313 -0.810 H40 7ON 84 7ON H41 H41 H 0 1 N N N N N N 15.079 -10.753 -17.969 -1.484 2.869 -1.845 H41 7ON 85 7ON H42 H42 H 0 1 N N N N N N 12.442 -12.133 -18.217 -3.216 5.394 -1.644 H42 7ON 86 7ON H43 H43 H 0 1 N N N N N N 13.814 -12.465 -17.105 -2.596 4.588 -3.119 H43 7ON 87 7ON H44 H44 H 0 1 N N N N N N 11.378 -10.964 -16.569 -4.236 2.929 -3.050 H44 7ON 88 7ON H45 H45 H 0 1 N N N N N N 12.735 -11.324 -15.448 -5.138 4.149 -2.108 H45 7ON 89 7ON H17 H17 H 0 1 N N N N N N 14.749 -8.276 -12.672 -5.012 -1.312 -1.821 H17 7ON 90 7ON H46 H46 H 0 1 N N N N N N 16.759 -9.161 -13.327 -4.669 -1.925 0.996 H46 7ON 91 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7ON C27 C26 SING N N 1 7ON C27 C28 SING N N 2 7ON C26 C25 SING N N 3 7ON C28 C29 SING N N 4 7ON C25 C29 SING N N 5 7ON C25 N2 SING N N 6 7ON N2 C8 SING N N 7 7ON C8 O2 DOUB N N 8 7ON C8 C7 SING N N 9 7ON O6 C7 SING N N 10 7ON C7 C6 SING N N 11 7ON C16 C13 SING N N 12 7ON C16 C15 SING N N 13 7ON C13 C12 SING N N 14 7ON C13 C10 SING N N 15 7ON O3 C9 DOUB N N 16 7ON C6 N3 SING N N 17 7ON C6 C5 SING N N 18 7ON C12 C11 SING N N 19 7ON C12 C14 SING N N 20 7ON C9 N3 SING N N 21 7ON C9 C10 SING N N 22 7ON C15 C14 SING N N 23 7ON C11 N4 SING N N 24 7ON C10 N4 SING N N 25 7ON C5 C1 SING N N 26 7ON C2 C1 SING N N 27 7ON C2 C3 SING N N 28 7ON N4 C17 SING N N 29 7ON C24 C23 SING N N 30 7ON C24 C19 SING N N 31 7ON C1 C4 SING N N 32 7ON C23 C22 SING N N 33 7ON C3 N1 SING N N 34 7ON C17 O4 DOUB N N 35 7ON C17 C18 SING N N 36 7ON C18 C19 SING N N 37 7ON C18 N5 SING N N 38 7ON O5 C30 DOUB N N 39 7ON C19 C20 SING N N 40 7ON N1 C4 SING N N 41 7ON C4 O1 DOUB N N 42 7ON C20 C21 SING N N 43 7ON C22 C21 SING N N 44 7ON N5 C30 SING N N 45 7ON C30 C31 SING N N 46 7ON F3 C31 SING N N 47 7ON C31 F1 SING N N 48 7ON C31 F2 SING N N 49 7ON N2 H1 SING N N 50 7ON C1 H2 SING N N 51 7ON C3 H3 SING N N 52 7ON C3 H4 SING N N 53 7ON C5 H5 SING N N 54 7ON C5 H6 SING N N 55 7ON C6 H7 SING N N 56 7ON C21 H8 SING N N 57 7ON C21 H9 SING N N 58 7ON C22 H10 SING N N 59 7ON C22 H11 SING N N 60 7ON C23 H12 SING N N 61 7ON C23 H13 SING N N 62 7ON C2 H14 SING N N 63 7ON C2 H15 SING N N 64 7ON N1 H16 SING N N 65 7ON N3 H18 SING N N 66 7ON C10 H19 SING N N 67 7ON C11 H20 SING N N 68 7ON C11 H21 SING N N 69 7ON C12 H22 SING N N 70 7ON C13 H23 SING N N 71 7ON C14 H24 SING N N 72 7ON C14 H25 SING N N 73 7ON C15 H26 SING N N 74 7ON C15 H27 SING N N 75 7ON C16 H28 SING N N 76 7ON C16 H29 SING N N 77 7ON C18 H30 SING N N 78 7ON C19 H31 SING N N 79 7ON C20 H32 SING N N 80 7ON C20 H33 SING N N 81 7ON C24 H34 SING N N 82 7ON C24 H35 SING N N 83 7ON N5 H36 SING N N 84 7ON C25 H37 SING N N 85 7ON C26 H38 SING N N 86 7ON C26 H39 SING N N 87 7ON C27 H40 SING N N 88 7ON C27 H41 SING N N 89 7ON C28 H42 SING N N 90 7ON C28 H43 SING N N 91 7ON C29 H44 SING N N 92 7ON C29 H45 SING N N 93 7ON C7 H17 SING N N 94 7ON O6 H46 SING N N 95 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7ON InChI InChI 1.06 "InChI=1S/C31H46F3N5O6/c32-31(33,34)30(45)38-23(17-7-2-1-3-8-17)29(44)39-16-19-9-6-12-21(19)24(39)27(42)37-22(15-18-13-14-35-26(18)41)25(40)28(43)36-20-10-4-5-11-20/h17-25,40H,1-16H2,(H,35,41)(H,36,43)(H,37,42)(H,38,45)/t18-,19-,21-,22-,23-,24-,25+/m0/s1" 7ON InChIKey InChI 1.06 FMXUVDFVVNRAMG-IFCRGVKQSA-N 7ON SMILES_CANONICAL CACTVS 3.385 "O[C@H]([C@H](C[C@@H]1CCNC1=O)NC(=O)[C@@H]2[C@H]3CCC[C@H]3CN2C(=O)[C@@H](NC(=O)C(F)(F)F)C4CCCCC4)C(=O)NC5CCCC5" 7ON SMILES CACTVS 3.385 "O[CH]([CH](C[CH]1CCNC1=O)NC(=O)[CH]2[CH]3CCC[CH]3CN2C(=O)[CH](NC(=O)C(F)(F)F)C4CCCCC4)C(=O)NC5CCCC5" 7ON SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CCC(CC1)[C@@H](C(=O)N2C[C@@H]3CCC[C@@H]3[C@H]2C(=O)N[C@@H](C[C@@H]4CCNC4=O)[C@H](C(=O)NC5CCCC5)O)NC(=O)C(F)(F)F" 7ON SMILES "OpenEye OEToolkits" 2.0.7 "C1CCC(CC1)C(C(=O)N2CC3CCCC3C2C(=O)NC(CC4CCNC4=O)C(C(=O)NC5CCCC5)O)NC(=O)C(F)(F)F" # _pdbx_chem_comp_identifier.comp_id 7ON _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{S},3~{a}~{S},6~{a}~{R})-2-[(2~{S})-2-cyclohexyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]ethanoyl]-~{N}-[(2~{S},3~{R})-4-(cyclopentylamino)-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]-3,3~{a},4,5,6,6~{a}-hexahydro-1~{H}-cyclopenta[c]pyrrole-3-carboxamide" # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 7ON _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C7 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7ON "Create component" 2023-03-01 PDBC 7ON "Initial release" 2023-04-05 RCSB 7ON "Modify PCM" 2024-09-27 PDBE 7ON "Modify descriptor" 2025-03-21 PDBC 7ON "Modify name" 2026-01-18 PDBC #