data_7Q6 # _chem_comp.id 7Q6 _chem_comp.name "[[(2R,3S,5R)-5-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-selanyl-phosphoryl] phosphono hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H16 N5 O12 P3 Se" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-08 _chem_comp.pdbx_modified_date 2024-01-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 570.142 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 7Q6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8ILE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7Q6 O3G O1 O 0 1 N N N N N N 12.886 -9.703 -34.231 -6.945 -2.731 1.222 O3G 7Q6 1 7Q6 PG P1 P 0 1 N N N N N N 13.809 -10.607 -35.013 -5.597 -2.891 0.357 PG 7Q6 2 7Q6 O1G O2 O 0 1 N N N N N N 14.487 -11.554 -34.061 -4.940 -4.332 0.648 O1G 7Q6 3 7Q6 O2G O3 O 0 1 N N N N N N 14.865 -9.835 -35.780 -5.919 -2.778 -1.084 O2G 7Q6 4 7Q6 O3B O4 O 0 1 N N N N N N 12.848 -11.412 -36.016 -4.555 -1.734 0.766 O3B 7Q6 5 7Q6 PB P2 P 0 1 N N N N N N 12.359 -12.910 -35.736 -4.458 -0.157 0.458 PB 7Q6 6 7Q6 O1B O5 O 0 1 N N N N N N 11.519 -13.271 -36.937 -4.845 0.096 -0.948 O1B 7Q6 7 7Q6 O2B O6 O 0 1 N N N N N N 13.612 -13.745 -35.711 -5.451 0.644 1.440 O2B 7Q6 8 7Q6 O3A O7 O 0 1 N N N N N N 11.418 -12.982 -34.410 -2.947 0.345 0.697 O3A 7Q6 9 7Q6 PA P3 P 0 1 N N R N N N 11.530 -13.865 -33.057 -2.132 1.672 0.291 PA 7Q6 10 7Q6 SEA SE1 SE 0 0 N N N N N N 13.317 -13.962 -32.483 -2.103 1.881 -1.969 SEA 7Q6 11 7Q6 O1A O8 O 0 1 N N N N N N 10.661 -13.301 -31.820 -2.789 2.857 0.888 O1A 7Q6 12 7Q6 "O5'" O9 O 0 1 N N N N N N 11.216 -15.396 -33.327 -0.622 1.563 0.839 "O5'" 7Q6 13 7Q6 "C5'" C1 C 0 1 N N N N N N 12.086 -16.291 -34.005 0.433 2.416 0.390 "C5'" 7Q6 14 7Q6 "C4'" C2 C 0 1 N N R N N N 11.197 -17.309 -34.676 1.731 2.045 1.109 "C4'" 7Q6 15 7Q6 "O4'" O10 O 0 1 N N N N N N 10.297 -17.900 -33.732 2.171 0.727 0.718 "O4'" 7Q6 16 7Q6 "C3'" C3 C 0 1 N N S N N N 10.340 -16.682 -35.765 2.892 2.964 0.650 "C3'" 7Q6 17 7Q6 "O3'" O11 O 0 1 N N N N N N 10.994 -16.718 -37.031 2.925 4.167 1.421 "O3'" 7Q6 18 7Q6 "C2'" C4 C 0 1 N N N N N N 9.081 -17.517 -35.749 4.134 2.087 0.942 "C2'" 7Q6 19 7Q6 "C1'" C5 C 0 1 N N R N N N 9.004 -18.051 -34.322 3.578 0.652 1.002 "C1'" 7Q6 20 7Q6 N9 N1 N 0 1 Y N N N N N 7.983 -17.230 -33.648 4.244 -0.183 -0.001 N9 7Q6 21 7Q6 C4 C6 C 0 1 Y N N N N N 6.697 -17.523 -33.616 5.436 -0.837 0.154 C4 7Q6 22 7Q6 N3 N2 N 0 1 N N N N N N 5.943 -18.548 -34.065 6.321 -0.941 1.152 N3 7Q6 23 7Q6 C2 C7 C 0 1 N N N N N N 4.610 -18.527 -33.835 7.414 -1.658 1.020 C2 7Q6 24 7Q6 N2 N3 N 0 1 N N N N N N 3.862 -19.550 -34.293 8.292 -1.735 2.072 N2 7Q6 25 7Q6 N1 N4 N 0 1 N N N N N N 4.011 -17.507 -33.159 7.701 -2.328 -0.132 N1 7Q6 26 7Q6 C8 C8 C 0 1 Y N N N N N 8.170 -16.053 -33.034 3.787 -0.456 -1.257 C8 7Q6 27 7Q6 N7 N5 N 0 1 Y N N N N N 7.017 -15.554 -32.555 4.630 -1.230 -1.875 N7 7Q6 28 7Q6 C5 C9 C 0 1 Y N N N N N 6.064 -16.420 -32.884 5.674 -1.502 -1.054 C5 7Q6 29 7Q6 C6 C10 C 0 1 N N N N N N 4.716 -16.454 -32.684 6.854 -2.271 -1.184 C6 7Q6 30 7Q6 O6 O12 O 0 1 N N N N N N 4.200 -15.504 -32.069 7.102 -2.867 -2.218 O6 7Q6 31 7Q6 H1 H1 H 0 1 N N N N N N 13.140 -8.798 -34.365 -6.809 -2.795 2.177 H1 7Q6 32 7Q6 H2 H2 H 0 1 N N N N N N 15.429 -11.466 -34.144 -5.513 -5.078 0.424 H2 7Q6 33 7Q6 H3 H3 H 0 1 N N N N N N 13.618 -14.331 -36.459 -5.256 0.525 2.379 H3 7Q6 34 7Q6 H4 H4 H 0 1 N N N N N N 13.395 -14.761 -31.264 -1.385 0.559 -2.381 H4 7Q6 35 7Q6 H5 H5 H 0 1 N N N N N N 12.760 -16.785 -33.289 0.566 2.294 -0.685 H5 7Q6 36 7Q6 H6 H6 H 0 1 N N N N N N 12.681 -15.750 -34.755 0.180 3.454 0.609 H6 7Q6 37 7Q6 H7 H7 H 0 1 N N N N N N 11.828 -18.088 -35.129 1.599 2.101 2.190 H7 7Q6 38 7Q6 H8 H8 H 0 1 N N N N N N 10.096 -15.647 -35.484 2.814 3.187 -0.414 H8 7Q6 39 7Q6 H9 H9 H 0 1 N N N N N N 11.778 -16.182 -36.998 3.685 4.734 1.232 H9 7Q6 40 7Q6 H10 H10 H 0 1 N N N N N N 8.201 -16.900 -35.983 4.864 2.180 0.137 H10 7Q6 41 7Q6 H11 H11 H 0 1 N N N N N N 9.152 -18.343 -36.471 4.581 2.364 1.897 H11 7Q6 42 7Q6 H12 H12 H 0 1 N N N N N N 8.698 -19.107 -34.338 3.734 0.235 1.997 H12 7Q6 43 7Q6 H13 H13 H 0 1 N N N N N N 4.294 -20.302 -34.790 8.102 -1.264 2.898 H13 7Q6 44 7Q6 H14 H14 H 0 1 N N N N N N 2.875 -19.557 -34.135 9.104 -2.260 1.989 H14 7Q6 45 7Q6 H15 H15 H 0 1 N N N N N N 3.023 -17.537 -33.010 8.517 -2.849 -0.197 H15 7Q6 46 7Q6 H16 H16 H 0 1 N N N N N N 9.129 -15.566 -32.936 2.863 -0.085 -1.676 H16 7Q6 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7Q6 "O3'" "C3'" SING N N 1 7Q6 O1B PB DOUB N N 2 7Q6 O3B PB SING N N 3 7Q6 O3B PG SING N N 4 7Q6 O2G PG DOUB N N 5 7Q6 "C3'" "C2'" SING N N 6 7Q6 "C3'" "C4'" SING N N 7 7Q6 "C2'" "C1'" SING N N 8 7Q6 PB O2B SING N N 9 7Q6 PB O3A SING N N 10 7Q6 PG O3G SING N N 11 7Q6 PG O1G SING N N 12 7Q6 "C4'" "C5'" SING N N 13 7Q6 "C4'" "O4'" SING N N 14 7Q6 O3A PA SING N N 15 7Q6 "C1'" "O4'" SING N N 16 7Q6 "C1'" N9 SING N N 17 7Q6 N2 C2 SING N N 18 7Q6 N3 C2 DOUB N N 19 7Q6 N3 C4 SING N N 20 7Q6 "C5'" "O5'" SING N N 21 7Q6 C2 N1 SING N N 22 7Q6 N9 C4 SING Y N 23 7Q6 N9 C8 SING Y N 24 7Q6 C4 C5 DOUB Y N 25 7Q6 "O5'" PA SING N N 26 7Q6 N1 C6 SING N N 27 7Q6 PA SEA SING N N 28 7Q6 PA O1A DOUB N N 29 7Q6 C8 N7 DOUB Y N 30 7Q6 C5 C6 SING N N 31 7Q6 C5 N7 SING Y N 32 7Q6 C6 O6 DOUB N N 33 7Q6 O3G H1 SING N N 34 7Q6 O1G H2 SING N N 35 7Q6 O2B H3 SING N N 36 7Q6 SEA H4 SING N N 37 7Q6 "C5'" H5 SING N N 38 7Q6 "C5'" H6 SING N N 39 7Q6 "C4'" H7 SING N N 40 7Q6 "C3'" H8 SING N N 41 7Q6 "O3'" H9 SING N N 42 7Q6 "C2'" H10 SING N N 43 7Q6 "C2'" H11 SING N N 44 7Q6 "C1'" H12 SING N N 45 7Q6 N2 H13 SING N N 46 7Q6 N2 H14 SING N N 47 7Q6 N1 H15 SING N N 48 7Q6 C8 H16 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7Q6 InChI InChI 1.06 "InChI=1S/C10H16N5O12P3Se/c11-10-13-8-7(9(17)14-10)12-3-15(8)6-1-4(16)5(25-6)2-24-30(23,31)27-29(21,22)26-28(18,19)20/h3-6,16H,1-2H2,(H,21,22)(H,23,31)(H2,18,19,20)(H3,11,13,14,17)/t4-,5+,6+,30+/m0/s1" 7Q6 InChIKey InChI 1.06 UKPXRYIQPLICEM-KUFCIHQDSA-N 7Q6 SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CO[P@]([SeH])(=O)O[P](O)(=O)O[P](O)(O)=O)O3" 7Q6 SMILES CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CO[P]([SeH])(=O)O[P](O)(=O)O[P](O)(O)=O)O3" 7Q6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)CO[P@](=O)(OP(=O)(O)OP(=O)(O)O)[SeH])O)N=C(NC2=O)N" 7Q6 SMILES "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1C3CC(C(O3)COP(=O)(OP(=O)(O)OP(=O)(O)O)[SeH])O)N=C(NC2=O)N" # _pdbx_chem_comp_identifier.comp_id 7Q6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{S},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-selanyl-phosphoryl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7Q6 "Create component" 2023-03-08 PDBC 7Q6 "Initial release" 2024-01-10 RCSB #