data_7QT # _chem_comp.id 7QT _chem_comp.name "[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-fluoranyl-4-methyl-3-oxidanyl-oxolan-2-yl]methyl phosphono hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H16 F N5 O10 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms AT-8500 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-12 _chem_comp.pdbx_modified_date 2024-07-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 459.218 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 7QT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PIE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7QT "C1'" C1 C 0 1 N N R N N N 34.742 34.325 42.141 1.888 0.664 0.348 "C1'" 7QT 1 7QT C2 C2 C 0 1 N N N N N N 34.283 38.380 40.836 6.048 -0.618 1.399 C2 7QT 2 7QT "C2'" C3 C 0 1 N N R N N N 33.792 33.303 41.459 2.117 2.060 -0.274 "C2'" 7QT 3 7QT C3 C4 C 0 1 N N N N N N 33.369 33.827 40.076 2.750 1.932 -1.661 C3 7QT 4 7QT "C3'" C5 C 0 1 N N R N N N 34.626 32.039 41.565 0.698 2.661 -0.380 "C3'" 7QT 5 7QT C4 C6 C 0 1 Y N N N N N 35.381 36.464 41.012 4.072 -0.601 0.203 C4 7QT 6 7QT "C4'" C7 C 0 1 N N R N N N 35.285 32.186 42.935 -0.221 1.557 0.190 "C4'" 7QT 7 7QT C5 C8 C 0 1 Y N N N N N 36.493 36.917 40.338 4.567 -1.589 -0.655 C5 7QT 8 7QT "C5'" C9 C 0 1 N N N N N N 36.594 31.475 43.137 -1.534 1.500 -0.593 "C5'" 7QT 9 7QT C6 C10 C 0 1 N N N N N N 36.526 38.251 39.861 5.876 -2.081 -0.438 C6 7QT 10 7QT C8 C11 C 0 1 Y N N N N N 36.914 34.907 40.903 2.562 -1.106 -1.321 C8 7QT 11 7QT F4 F1 F 0 1 N N N N N N 32.661 33.186 42.345 2.920 2.843 0.562 F4 7QT 12 7QT N1 N1 N 0 1 N N N N N N 35.324 38.923 40.121 6.588 -1.577 0.594 N1 7QT 13 7QT N2 N2 N 0 1 N N N N N N 33.204 39.146 41.036 6.795 -0.124 2.439 N2 7QT 14 7QT N3 N3 N 0 1 N N N N N N 34.262 37.147 41.331 4.836 -0.149 1.204 N3 7QT 15 7QT N7 N4 N 0 1 Y N N N N N 37.456 35.920 40.263 3.598 -1.855 -1.565 N7 7QT 16 7QT N9 N5 N 0 1 Y N N N N N 35.636 35.155 41.327 2.808 -0.314 -0.237 N9 7QT 17 7QT O1A O1 O 0 1 N N N N N N 39.480 31.278 43.112 -3.775 -0.441 -1.996 O1A 7QT 18 7QT O1B O2 O 0 1 N N N N N N 36.974 27.111 41.609 -6.998 -0.037 1.370 O1B 7QT 19 7QT O2A O3 O 0 1 N N N N N N 39.345 31.194 40.494 -4.659 1.498 -0.645 O2A 7QT 20 7QT O2B O4 O 0 1 N N N N N N 37.554 28.734 39.574 -6.772 -1.510 -0.668 O2B 7QT 21 7QT "O3'" O5 O 0 1 N N N N N N 33.863 30.863 41.580 0.598 3.851 0.406 "O3'" 7QT 22 7QT O3A O6 O 0 1 N N N N N N 38.254 29.420 41.833 -4.641 -0.769 0.465 O3A 7QT 23 7QT O3B O7 O 0 1 N N N N N N 35.798 29.049 41.541 -6.233 -2.545 1.571 O3B 7QT 24 7QT "O4'" O8 O 0 1 N N N N N N 35.582 33.586 43.019 0.522 0.332 0.015 "O4'" 7QT 25 7QT "O5'" O9 O 0 1 N N N N N N 37.464 31.854 42.049 -2.414 0.556 0.021 "O5'" 7QT 26 7QT O6 O10 O 0 1 N N N N N N 37.451 38.801 39.254 6.349 -2.939 -1.164 O6 7QT 27 7QT PA P1 P 0 1 N N N N N N 38.766 30.957 41.850 -3.889 0.239 -0.541 PA 7QT 28 7QT PB P2 P 0 1 N N N N N N 37.122 28.494 41.062 -6.174 -1.221 0.655 PB 7QT 29 7QT H1 H1 H 0 1 N N N N N N 34.111 34.996 42.743 2.016 0.705 1.429 H1 7QT 30 7QT H4 H2 H 0 1 N N N N N N 32.775 34.745 40.197 2.840 2.920 -2.112 H4 7QT 31 7QT H2 H3 H 0 1 N N N N N N 34.265 34.047 39.477 3.739 1.483 -1.569 H2 7QT 32 7QT H3 H4 H 0 1 N N N N N N 32.764 33.064 39.564 2.122 1.301 -2.290 H3 7QT 33 7QT H5 H5 H 0 1 N N N N N N 35.393 32.022 40.777 0.448 2.869 -1.420 H5 7QT 34 7QT H6 H6 H 0 1 N N N N N N 34.573 31.889 43.719 -0.416 1.735 1.248 H6 7QT 35 7QT H8 H7 H 0 1 N N N N N N 36.436 30.386 43.130 -2.001 2.485 -0.592 H8 7QT 36 7QT H7 H8 H 0 1 N N N N N N 37.040 31.774 44.097 -1.332 1.195 -1.620 H7 7QT 37 7QT H9 H9 H 0 1 N N N N N N 37.426 33.972 41.077 1.645 -1.111 -1.891 H9 7QT 38 7QT H10 H10 H 0 1 N N N N N N 35.217 39.852 39.766 7.487 -1.898 0.762 H10 7QT 39 7QT H12 H11 H 0 1 N N N N N N 32.421 38.784 41.542 6.426 0.561 3.018 H12 7QT 40 7QT H11 H12 H 0 1 N N N N N N 33.181 40.080 40.679 7.691 -0.461 2.595 H11 7QT 41 7QT H13 H13 H 0 1 N N N N N N 40.333 31.645 42.909 -3.281 -1.273 -2.004 H13 7QT 42 7QT H14 H14 H 0 1 N N N N N N 37.177 26.478 40.930 -6.662 0.205 2.243 H14 7QT 43 7QT H16 H15 H 0 1 N N N N N N 34.440 30.111 41.647 -0.273 4.270 0.375 H16 7QT 44 7QT H15 H16 H 0 1 N N N N N N 35.368 29.504 40.827 -7.129 -2.874 1.728 H15 7QT 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7QT O6 C6 DOUB N N 1 7QT O2B PB DOUB N N 2 7QT C6 N1 SING N N 3 7QT C6 C5 SING N N 4 7QT C3 "C2'" SING N N 5 7QT N1 C2 SING N N 6 7QT N7 C5 SING Y N 7 7QT N7 C8 DOUB Y N 8 7QT C5 C4 DOUB Y N 9 7QT O2A PA DOUB N N 10 7QT C2 N2 SING N N 11 7QT C2 N3 DOUB N N 12 7QT C8 N9 SING Y N 13 7QT C4 N9 SING Y N 14 7QT C4 N3 SING N N 15 7QT PB O3B SING N N 16 7QT PB O1B SING N N 17 7QT PB O3A SING N N 18 7QT N9 "C1'" SING N N 19 7QT "C2'" "C3'" SING N N 20 7QT "C2'" "C1'" SING N N 21 7QT "C2'" F4 SING N N 22 7QT "C3'" "O3'" SING N N 23 7QT "C3'" "C4'" SING N N 24 7QT O3A PA SING N N 25 7QT PA "O5'" SING N N 26 7QT PA O1A SING N N 27 7QT "O5'" "C5'" SING N N 28 7QT "C1'" "O4'" SING N N 29 7QT "C4'" "O4'" SING N N 30 7QT "C4'" "C5'" SING N N 31 7QT "C1'" H1 SING N N 32 7QT C3 H4 SING N N 33 7QT C3 H2 SING N N 34 7QT C3 H3 SING N N 35 7QT "C3'" H5 SING N N 36 7QT "C4'" H6 SING N N 37 7QT "C5'" H8 SING N N 38 7QT "C5'" H7 SING N N 39 7QT C8 H9 SING N N 40 7QT N1 H10 SING N N 41 7QT N2 H12 SING N N 42 7QT N2 H11 SING N N 43 7QT O1A H13 SING N N 44 7QT O1B H14 SING N N 45 7QT "O3'" H16 SING N N 46 7QT O3B H15 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7QT InChI InChI 1.06 "InChI=1S/C11H16FN5O10P2/c1-11(12)6(18)4(2-25-29(23,24)27-28(20,21)22)26-9(11)17-3-14-5-7(17)15-10(13)16-8(5)19/h3-4,6,9,18H,2H2,1H3,(H,23,24)(H2,20,21,22)(H3,13,15,16,19)/t4-,6-,9-,11-/m1/s1" 7QT InChIKey InChI 1.06 LEEQMJUVDQBILY-GITKWUPZSA-N 7QT SMILES_CANONICAL CACTVS 3.385 "C[C@@]1(F)[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(O)=O)O[C@H]1n2cnc3C(=O)NC(=Nc23)N" 7QT SMILES CACTVS 3.385 "C[C]1(F)[CH](O)[CH](CO[P](O)(=O)O[P](O)(O)=O)O[CH]1n2cnc3C(=O)NC(=Nc23)N" 7QT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@]1([C@@H]([C@H](O[C@H]1n2cnc3c2N=C(NC3=O)N)COP(=O)(O)OP(=O)(O)O)O)F" 7QT SMILES "OpenEye OEToolkits" 2.0.7 "CC1(C(C(OC1n2cnc3c2N=C(NC3=O)N)COP(=O)(O)OP(=O)(O)O)O)F" # _pdbx_chem_comp_identifier.comp_id 7QT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-fluoranyl-4-methyl-3-oxidanyl-oxolan-2-yl]methyl phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7QT "Create component" 2023-07-12 PDBE 7QT "Initial release" 2024-07-31 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 7QT _pdbx_chem_comp_synonyms.name AT-8500 _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #