data_7RA # _chem_comp.id 7RA _chem_comp.name "7-ALPHA-D-RIBOFURANOSYL-2-AMINOPURINE-5'-PHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H14 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2002-03-19 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 347.221 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 7RA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1L5M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7RA C4 C4 C 0 1 Y N N 57.467 42.219 13.695 0.866 -0.838 3.735 C4 7RA 1 7RA C5 C5 C 0 1 Y N N 57.637 41.784 12.369 0.256 0.245 3.074 C5 7RA 2 7RA C6 C6 C 0 1 Y N N 58.784 42.242 11.645 -0.071 1.375 3.807 C6 7RA 3 7RA N1 N1 N 0 1 Y N N 59.646 43.089 12.301 0.201 1.396 5.102 N1 7RA 4 7RA C2 C2 C 0 1 Y N N 59.432 43.487 13.603 0.776 0.360 5.700 C2 7RA 5 7RA N3 N3 N 0 1 Y N N 58.348 43.058 14.314 1.111 -0.735 5.042 N3 7RA 6 7RA N9 N9 N 0 1 Y N N 56.341 41.665 14.138 1.075 -1.792 2.808 N9 7RA 7 7RA C8 C8 C 0 1 Y N N 55.828 40.936 13.148 0.646 -1.381 1.647 C8 7RA 8 7RA N7 N7 N 0 1 Y N N 56.590 40.961 12.032 0.132 -0.135 1.752 N7 7RA 9 7RA N10 N10 N 0 1 N N N 60.338 44.349 14.215 1.041 0.433 7.058 N10 7RA 10 7RA P P P 0 1 N N N 59.402 39.446 6.192 0.944 0.155 -4.829 P 7RA 11 7RA O1P O1P O 0 1 N N N 59.172 38.186 5.405 0.936 1.635 -4.881 O1P 7RA 12 7RA O2P O2P O 0 1 N N N 59.634 40.617 5.318 2.363 -0.392 -5.355 O2P 7RA 13 7RA O3P O3P O 0 1 N N N 60.584 39.258 7.072 -0.233 -0.419 -5.764 O3P 7RA 14 7RA "O5'" O5* O 0 1 N N N 58.072 39.721 7.058 0.710 -0.329 -3.312 "O5'" 7RA 15 7RA "C5'" C5* C 0 1 N N N 57.560 38.724 7.978 -0.558 0.186 -2.905 "C5'" 7RA 16 7RA "C4'" C4* C 0 1 N N R 57.925 39.120 9.388 -0.844 -0.241 -1.463 "C4'" 7RA 17 7RA "O4'" O4* O 0 1 N N N 57.351 40.421 9.787 0.153 0.293 -0.579 "O4'" 7RA 18 7RA "C3'" C3* C 0 1 N N S 57.463 38.181 10.504 -2.184 0.364 -0.976 "C3'" 7RA 19 7RA "O3'" O3* O 0 1 N N N 58.300 38.236 11.669 -3.286 -0.472 -1.329 "O3'" 7RA 20 7RA "C2'" C2* C 0 1 N N R 56.089 38.745 10.771 -1.960 0.379 0.562 "C2'" 7RA 21 7RA "O2'" O2* O 0 1 N N N 55.557 38.282 12.017 -2.285 -0.888 1.135 "O2'" 7RA 22 7RA "C1'" C1* C 0 1 N N S 56.287 40.254 10.694 -0.446 0.661 0.668 "C1'" 7RA 23 7RA H6 H6 H 0 1 N N N 58.999 41.948 10.603 -0.540 2.223 3.330 H6 7RA 24 7RA H8 H8 H 0 1 N N N 54.882 40.376 13.241 0.694 -1.954 0.733 H8 7RA 25 7RA H101 1H10 H 0 0 N N N 60.179 44.643 15.178 0.805 1.232 7.556 H101 7RA 26 7RA H102 2H10 H 0 0 N N N 60.439 45.180 13.633 1.457 -0.315 7.512 H102 7RA 27 7RA HOP2 2HOP H 0 0 N N N 59.779 41.413 5.815 2.464 -0.080 -6.265 HOP2 7RA 28 7RA HOP3 3HOP H 0 0 N N N 60.729 40.054 7.569 -0.193 -1.383 -5.702 HOP3 7RA 29 7RA "H5'1" 1H5* H 0 0 N N N 56.464 38.556 7.854 -1.337 -0.204 -3.560 "H5'1" 7RA 30 7RA "H5'2" 2H5* H 0 0 N N N 57.905 37.695 7.723 -0.545 1.274 -2.965 "H5'2" 7RA 31 7RA "H4'" H4* H 0 1 N N N 59.037 39.114 9.309 -0.871 -1.328 -1.390 "H4'" 7RA 32 7RA "H3'" H3* H 0 1 N N N 57.489 37.100 10.231 -2.321 1.375 -1.361 "H3'" 7RA 33 7RA "HO'3" 3HO* H 0 0 N N N 58.013 37.652 12.362 -4.084 -0.038 -0.998 "HO'3" 7RA 34 7RA "H2'" H2* H 0 1 N N N 55.322 38.409 10.034 -2.539 1.174 1.030 "H2'" 7RA 35 7RA "HO'2" 2HO* H 0 0 N N N 54.692 38.637 12.185 -3.223 -1.044 0.955 "HO'2" 7RA 36 7RA "H1'" H1* H 0 1 N N N 55.332 40.734 10.376 -0.280 1.721 0.859 "H1'" 7RA 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7RA C4 C5 DOUB Y N 1 7RA C4 N3 SING Y N 2 7RA C4 N9 SING Y N 3 7RA C5 C6 SING Y N 4 7RA C5 N7 SING Y N 5 7RA C6 N1 DOUB Y N 6 7RA C6 H6 SING N N 7 7RA N1 C2 SING Y N 8 7RA C2 N3 DOUB Y N 9 7RA C2 N10 SING N N 10 7RA N9 C8 DOUB Y N 11 7RA C8 N7 SING Y N 12 7RA C8 H8 SING N N 13 7RA N7 "C1'" SING N N 14 7RA N10 H101 SING N N 15 7RA N10 H102 SING N N 16 7RA P O1P DOUB N N 17 7RA P O2P SING N N 18 7RA P O3P SING N N 19 7RA P "O5'" SING N N 20 7RA O2P HOP2 SING N N 21 7RA O3P HOP3 SING N N 22 7RA "O5'" "C5'" SING N N 23 7RA "C5'" "C4'" SING N N 24 7RA "C5'" "H5'1" SING N N 25 7RA "C5'" "H5'2" SING N N 26 7RA "C4'" "O4'" SING N N 27 7RA "C4'" "C3'" SING N N 28 7RA "C4'" "H4'" SING N N 29 7RA "O4'" "C1'" SING N N 30 7RA "C3'" "O3'" SING N N 31 7RA "C3'" "C2'" SING N N 32 7RA "C3'" "H3'" SING N N 33 7RA "O3'" "HO'3" SING N N 34 7RA "C2'" "O2'" SING N N 35 7RA "C2'" "C1'" SING N N 36 7RA "C2'" "H2'" SING N N 37 7RA "O2'" "HO'2" SING N N 38 7RA "C1'" "H1'" SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7RA SMILES ACDLabs 10.04 "O=P(O)(O)OCC3OC(n2cnc1nc(ncc12)N)C(O)C3O" 7RA SMILES_CANONICAL CACTVS 3.341 "Nc1ncc2n(cnc2n1)[C@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O" 7RA SMILES CACTVS 3.341 "Nc1ncc2n(cnc2n1)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O" 7RA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1c2c(ncn2[C@@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)nc(n1)N" 7RA SMILES "OpenEye OEToolkits" 1.5.0 "c1c2c(ncn2C3C(C(C(O3)COP(=O)(O)O)O)O)nc(n1)N" 7RA InChI InChI 1.03 "InChI=1S/C10H14N5O7P/c11-10-12-1-4-8(14-10)13-3-15(4)9-7(17)6(16)5(22-9)2-21-23(18,19)20/h1,3,5-7,9,16-17H,2H2,(H2,11,12,14)(H2,18,19,20)/t5-,6-,7-,9+/m1/s1" 7RA InChIKey InChI 1.03 UDRQVOJQMHZSIM-PULFBKJNSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 7RA "SYSTEMATIC NAME" ACDLabs 10.04 "7-(5-O-phosphono-alpha-D-ribofuranosyl)-7H-purin-2-amine" 7RA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5S)-5-(2-aminopurin-7-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7RA "Create component" 2002-03-19 RCSB 7RA "Modify descriptor" 2011-06-04 RCSB #