data_7RQ # _chem_comp.id 7RQ _chem_comp.name "N-[6-[[9-(dimethylamino)-12H-benzo[a]phenoxazin-5-yl]amino]hexyl]-4-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-3-[oxidanyl(oxidanylidene)-$l^4-azanyl]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C38 H39 N5 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-10-15 _chem_comp.pdbx_modified_date 2022-09-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 677.746 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 7RQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7VO8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7RQ C10 C1 C 0 1 Y N N -9.834 -1.251 91.630 6.290 2.006 0.073 C10 7RQ 1 7RQ C13 C2 C 0 1 Y N N -11.438 -1.377 93.891 8.857 0.898 -0.085 C13 7RQ 2 7RQ C15 C3 C 0 1 Y N N -10.825 -0.462 91.921 6.461 0.664 -0.187 C15 7RQ 3 7RQ C17 C4 C 0 1 Y N N -13.638 -0.926 94.818 10.221 -1.088 -0.123 C17 7RQ 4 7RQ C20 C5 C 0 1 Y N N -14.728 -1.407 95.510 11.434 -1.714 0.094 C20 7RQ 5 7RQ C21 C6 C 0 1 Y N N -15.990 -0.959 95.177 11.499 -3.096 0.138 C21 7RQ 6 7RQ C22 C7 C 0 1 Y N N -16.151 -0.038 94.150 10.347 -3.850 -0.036 C22 7RQ 7 7RQ C26 C8 C 0 1 N N N -18.354 -0.715 93.786 11.699 -5.912 0.240 C26 7RQ 8 7RQ C28 C9 C 0 1 Y N N -8.276 -4.170 93.307 8.382 4.976 0.705 C28 7RQ 9 7RQ C01 C10 C 0 1 Y N N 2.566 -2.633 83.605 -8.235 -0.448 -0.814 C01 7RQ 10 7RQ C02 C11 C 0 1 Y N N 1.199 -2.960 83.571 -8.408 0.912 -0.550 C02 7RQ 11 7RQ C03 C12 C 0 1 Y N N 0.303 -2.387 84.485 -7.308 1.721 -0.359 C03 7RQ 12 7RQ C04 C13 C 0 1 Y N N 0.764 -1.491 85.440 -6.023 1.181 -0.430 C04 7RQ 13 7RQ C05 C14 C 0 1 Y N N 2.111 -1.163 85.440 -5.851 -0.179 -0.694 C05 7RQ 14 7RQ C06 C15 C 0 1 Y N N 3.000 -1.725 84.548 -6.950 -0.988 -0.885 C06 7RQ 15 7RQ C07 C16 C 0 1 N N N -0.050 -0.720 86.496 -4.843 2.051 -0.226 C07 7RQ 16 7RQ C11 C17 C 0 1 Y N N -9.535 -2.265 92.528 7.415 2.834 0.261 C11 7RQ 17 7RQ C12 C18 C 0 1 Y N N -10.353 -2.362 93.720 8.715 2.272 0.180 C12 7RQ 18 7RQ C14 C19 C 0 1 Y N N -11.633 -0.428 92.943 7.739 0.105 -0.267 C14 7RQ 19 7RQ C18 C20 C 0 1 Y N N -13.762 0.002 93.777 9.060 -1.839 -0.303 C18 7RQ 20 7RQ C23 C21 C 0 1 Y N N -15.042 0.444 93.440 9.128 -3.221 -0.257 C23 7RQ 21 7RQ C25 C22 C 0 1 N N N -17.680 1.716 93.737 9.199 -6.045 -0.174 C25 7RQ 22 7RQ C27 C23 C 0 1 Y N N -8.518 -3.172 92.349 7.274 4.205 0.528 C27 7RQ 23 7RQ C29 C24 C 0 1 Y N N -9.084 -4.252 94.469 9.660 4.424 0.624 C29 7RQ 24 7RQ C30 C25 C 0 1 Y N N -10.122 -3.334 94.657 9.835 3.099 0.367 C30 7RQ 25 7RQ C31 C26 C 0 1 N N N -7.674 -0.576 90.436 3.835 1.686 -0.058 C31 7RQ 26 7RQ C32 C27 C 0 1 N N N -6.810 -1.194 89.326 2.559 2.520 0.071 C32 7RQ 27 7RQ C33 C28 C 0 1 N N N -5.358 -1.398 89.783 1.339 1.621 -0.140 C33 7RQ 28 7RQ C34 C29 C 0 1 N N N -4.522 -2.155 88.735 0.062 2.455 -0.011 C34 7RQ 29 7RQ C35 C30 C 0 1 N N N -3.321 -1.303 88.309 -1.158 1.556 -0.222 C35 7RQ 30 7RQ C36 C31 C 0 1 N N N -2.329 -1.941 87.315 -2.434 2.390 -0.093 C36 7RQ 31 7RQ C38 C32 C 0 1 N N N 3.626 -3.185 82.629 -9.416 -1.319 -1.013 C38 7RQ 32 7RQ C39 C33 C 0 1 N N N 4.571 -4.342 82.972 -10.204 -1.764 0.145 C39 7RQ 33 7RQ C41 C34 C 0 1 N N N 4.225 -5.258 84.145 -9.904 -1.239 1.482 C41 7RQ 34 7RQ C42 C35 C 0 1 N N N 5.219 -6.334 84.576 -10.905 -1.511 2.586 C42 7RQ 35 7RQ C43 C36 C 0 1 N N N 6.627 -5.994 84.113 -11.355 -2.972 2.450 C43 7RQ 36 7RQ C44 C37 C 0 1 N N N 6.698 -5.617 82.640 -12.071 -3.157 1.114 C44 7RQ 37 7RQ C45 C38 C 0 1 N N N 5.596 -4.665 82.182 -11.227 -2.668 -0.026 C45 7RQ 38 7RQ N09 N1 N 0 1 N N N -9.042 -1.098 90.404 5.003 2.546 0.144 N09 7RQ 39 7RQ N16 N2 N 0 1 N N N -12.386 -1.347 95.104 10.136 0.317 -0.166 N16 7RQ 40 7RQ N24 N3 N 0 1 N N N -17.326 0.314 93.897 10.414 -5.247 0.009 N24 7RQ 41 7RQ N37 N4 N 0 1 N N N -1.292 -0.930 87.231 -3.602 1.529 -0.294 N37 7RQ 42 7RQ N48 N5 N 1 1 N N N 0.654 -3.913 82.611 -9.770 1.484 -0.475 N48 7RQ 43 7RQ O08 O1 O 0 1 N N N 0.451 0.303 86.777 -4.993 3.235 0.003 O08 7RQ 44 7RQ O19 O2 O 0 1 N N N -12.632 0.353 93.202 7.872 -1.223 -0.526 O19 7RQ 45 7RQ O40 O3 O 0 1 N N N 3.731 -2.664 81.562 -9.733 -1.666 -2.134 O40 7RQ 46 7RQ O46 O4 O 0 1 N N N 5.852 -3.978 80.992 -11.472 -3.139 -1.258 O46 7RQ 47 7RQ O47 O5 O 0 1 N N N 3.192 -5.151 84.711 -8.889 -0.609 1.696 O47 7RQ 48 7RQ O49 O6 O 0 1 N N N 1.336 -4.685 82.056 -9.920 2.685 -0.332 O49 7RQ 49 7RQ O50 O7 O -1 1 N N N -0.726 -3.938 82.364 -10.743 0.755 -0.556 O50 7RQ 50 7RQ H1 H1 H 0 1 N N N -11.013 0.304 91.183 5.595 0.035 -0.331 H1 7RQ 51 7RQ H2 H2 H 0 1 N N N -14.596 -2.127 96.304 12.330 -1.126 0.230 H2 7RQ 52 7RQ H3 H3 H 0 1 N N N -16.852 -1.324 95.715 12.446 -3.588 0.307 H3 7RQ 53 7RQ H4 H4 H 0 1 N N N -17.900 -1.706 93.935 12.187 -6.102 -0.716 H4 7RQ 54 7RQ H5 H5 H 0 1 N N N -19.126 -0.546 94.552 12.335 -5.272 0.852 H5 7RQ 55 7RQ H6 H6 H 0 1 N N N -18.812 -0.669 92.787 11.531 -6.857 0.757 H6 7RQ 56 7RQ H7 H7 H 0 1 N N N -7.473 -4.876 93.158 8.271 6.030 0.910 H7 7RQ 57 7RQ H8 H8 H 0 1 N N N -0.746 -2.643 84.446 -7.442 2.773 -0.155 H8 7RQ 58 7RQ H9 H9 H 0 1 N N N 2.475 -0.446 86.160 -4.857 -0.596 -0.749 H9 7RQ 59 7RQ H10 H10 H 0 1 N N N 4.044 -1.452 84.588 -6.817 -2.040 -1.089 H10 7RQ 60 7RQ H11 H11 H 0 1 N N N -15.178 1.153 92.637 8.233 -3.811 -0.394 H11 7RQ 61 7RQ H12 H12 H 0 1 N N N -16.780 2.338 93.854 8.729 -6.218 0.794 H12 7RQ 62 7RQ H13 H13 H 0 1 N N N -18.108 1.874 92.736 8.507 -5.509 -0.823 H13 7RQ 63 7RQ H14 H14 H 0 1 N N N -18.421 1.996 94.500 9.457 -7.001 -0.628 H14 7RQ 64 7RQ H15 H15 H 0 1 N N N -7.900 -3.117 91.465 6.290 4.647 0.594 H15 7RQ 65 7RQ H16 H16 H 0 1 N N N -8.899 -5.020 95.206 10.523 5.056 0.769 H16 7RQ 66 7RQ H17 H17 H 0 1 N N N -10.741 -3.391 95.540 10.831 2.685 0.307 H17 7RQ 67 7RQ H18 H18 H 0 1 N N N -7.224 -0.811 91.412 3.831 0.896 0.694 H18 7RQ 68 7RQ H19 H19 H 0 1 N N N -7.704 0.515 90.300 3.879 1.241 -1.052 H19 7RQ 69 7RQ H20 H20 H 0 1 N N N -6.818 -0.524 88.453 2.514 2.965 1.065 H20 7RQ 70 7RQ H21 H21 H 0 1 N N N -7.235 -2.169 89.044 2.563 3.309 -0.681 H21 7RQ 71 7RQ H22 H22 H 0 1 N N N -5.359 -1.974 90.720 1.383 1.176 -1.134 H22 7RQ 72 7RQ H23 H23 H 0 1 N N N -4.900 -0.414 89.959 1.334 0.832 0.612 H23 7RQ 73 7RQ H24 H24 H 0 1 N N N -5.147 -2.369 87.856 0.018 2.900 0.983 H24 7RQ 74 7RQ H25 H25 H 0 1 N N N -4.163 -3.100 89.169 0.066 3.244 -0.762 H25 7RQ 75 7RQ H26 H26 H 0 1 N N N -2.759 -1.043 89.218 -1.114 1.111 -1.216 H26 7RQ 76 7RQ H27 H27 H 0 1 N N N -3.712 -0.386 87.845 -1.162 0.767 0.530 H27 7RQ 77 7RQ H28 H28 H 0 1 N N N -2.800 -2.113 86.336 -2.478 2.835 0.901 H28 7RQ 78 7RQ H29 H29 H 0 1 N N N -1.931 -2.891 87.702 -2.430 3.179 -0.844 H29 7RQ 79 7RQ H31 H31 H 0 1 N N N 4.919 -7.297 84.137 -10.435 -1.357 3.557 H31 7RQ 80 7RQ H32 H32 H 0 1 N N N 5.211 -6.412 85.673 -11.763 -0.848 2.480 H32 7RQ 81 7RQ H33 H33 H 0 1 N N N 7.272 -6.869 84.282 -10.484 -3.626 2.490 H33 7RQ 82 7RQ H34 H34 H 0 1 N N N 6.996 -5.147 84.709 -12.034 -3.221 3.266 H34 7RQ 83 7RQ H35 H35 H 0 1 N N N 6.626 -6.539 82.044 -12.294 -4.214 0.970 H35 7RQ 84 7RQ H36 H36 H 0 1 N N N 7.669 -5.135 82.454 -13.005 -2.594 1.128 H36 7RQ 85 7RQ H38 H38 H 0 1 N N N -9.563 -0.488 89.806 4.883 3.491 0.327 H38 7RQ 86 7RQ H39 H39 H 0 1 N N N -12.100 -1.616 96.024 10.932 0.865 -0.248 H39 7RQ 87 7RQ H40 H40 H 0 1 N N N -1.481 -0.166 87.848 -3.483 0.584 -0.477 H40 7RQ 88 7RQ H41 H41 H 0 1 N N N 5.180 -3.321 80.854 -10.968 -2.748 -1.985 H41 7RQ 89 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7RQ O46 C45 SING N N 1 7RQ O40 C38 DOUB N N 2 7RQ O49 N48 DOUB N N 3 7RQ C45 C44 SING N N 4 7RQ C45 C39 DOUB N N 5 7RQ O50 N48 SING N N 6 7RQ N48 C02 SING N N 7 7RQ C38 C39 SING N N 8 7RQ C38 C01 SING N N 9 7RQ C44 C43 SING N N 10 7RQ C39 C41 SING N N 11 7RQ C02 C01 DOUB Y N 12 7RQ C02 C03 SING Y N 13 7RQ C01 C06 SING Y N 14 7RQ C43 C42 SING N N 15 7RQ C41 C42 SING N N 16 7RQ C41 O47 DOUB N N 17 7RQ C03 C04 DOUB Y N 18 7RQ C06 C05 DOUB Y N 19 7RQ C05 C04 SING Y N 20 7RQ C04 C07 SING N N 21 7RQ C07 O08 DOUB N N 22 7RQ C07 N37 SING N N 23 7RQ N37 C36 SING N N 24 7RQ C36 C35 SING N N 25 7RQ C35 C34 SING N N 26 7RQ C34 C33 SING N N 27 7RQ C32 C33 SING N N 28 7RQ C32 C31 SING N N 29 7RQ N09 C31 SING N N 30 7RQ N09 C10 SING N N 31 7RQ C10 C15 DOUB Y N 32 7RQ C10 C11 SING Y N 33 7RQ C15 C14 SING Y N 34 7RQ C27 C11 DOUB Y N 35 7RQ C27 C28 SING Y N 36 7RQ C11 C12 SING Y N 37 7RQ C14 O19 SING N N 38 7RQ C14 C13 DOUB Y N 39 7RQ O19 C18 SING N N 40 7RQ C28 C29 DOUB Y N 41 7RQ C23 C18 DOUB Y N 42 7RQ C23 C22 SING Y N 43 7RQ C12 C13 SING Y N 44 7RQ C12 C30 DOUB Y N 45 7RQ C25 N24 SING N N 46 7RQ C18 C17 SING Y N 47 7RQ C26 N24 SING N N 48 7RQ C13 N16 SING N N 49 7RQ N24 C22 SING N N 50 7RQ C22 C21 DOUB Y N 51 7RQ C29 C30 SING Y N 52 7RQ C17 N16 SING N N 53 7RQ C17 C20 DOUB Y N 54 7RQ C21 C20 SING Y N 55 7RQ C15 H1 SING N N 56 7RQ C20 H2 SING N N 57 7RQ C21 H3 SING N N 58 7RQ C26 H4 SING N N 59 7RQ C26 H5 SING N N 60 7RQ C26 H6 SING N N 61 7RQ C28 H7 SING N N 62 7RQ C03 H8 SING N N 63 7RQ C05 H9 SING N N 64 7RQ C06 H10 SING N N 65 7RQ C23 H11 SING N N 66 7RQ C25 H12 SING N N 67 7RQ C25 H13 SING N N 68 7RQ C25 H14 SING N N 69 7RQ C27 H15 SING N N 70 7RQ C29 H16 SING N N 71 7RQ C30 H17 SING N N 72 7RQ C31 H18 SING N N 73 7RQ C31 H19 SING N N 74 7RQ C32 H20 SING N N 75 7RQ C32 H21 SING N N 76 7RQ C33 H22 SING N N 77 7RQ C33 H23 SING N N 78 7RQ C34 H24 SING N N 79 7RQ C34 H25 SING N N 80 7RQ C35 H26 SING N N 81 7RQ C35 H27 SING N N 82 7RQ C36 H28 SING N N 83 7RQ C36 H29 SING N N 84 7RQ C42 H31 SING N N 85 7RQ C42 H32 SING N N 86 7RQ C43 H33 SING N N 87 7RQ C43 H34 SING N N 88 7RQ C44 H35 SING N N 89 7RQ C44 H36 SING N N 90 7RQ N09 H38 SING N N 91 7RQ N16 H39 SING N N 92 7RQ N37 H40 SING N N 93 7RQ O46 H41 SING N N 94 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7RQ InChI InChI 1.03 "InChI=1S/C38H39N5O7/c1-42(2)24-15-17-28-33(21-24)50-34-22-29(25-10-5-6-11-26(25)36(34)41-28)39-18-7-3-4-8-19-40-38(47)23-14-16-27(30(20-23)43(48)49)37(46)35-31(44)12-9-13-32(35)45/h5-6,10-11,14-17,20-22,39,41,44H,3-4,7-9,12-13,18-19H2,1-2H3,(H,40,47)" 7RQ InChIKey InChI 1.03 JKNRGQRJDMEUPO-UHFFFAOYSA-N 7RQ SMILES_CANONICAL CACTVS 3.385 "CN(C)c1ccc2Nc3c(Oc2c1)cc(NCCCCCCNC(=O)c4ccc(C(=O)C5=C(O)CCCC5=O)c(c4)[N+]([O-])=O)c6ccccc36" 7RQ SMILES CACTVS 3.385 "CN(C)c1ccc2Nc3c(Oc2c1)cc(NCCCCCCNC(=O)c4ccc(C(=O)C5=C(O)CCCC5=O)c(c4)[N+]([O-])=O)c6ccccc36" 7RQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)c1ccc2c(c1)Oc3cc(c4ccccc4c3N2)NCCCCCCNC(=O)c5ccc(c(c5)[N+](=O)[O-])C(=O)C6=C(CCCC6=O)O" 7RQ SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)c1ccc2c(c1)Oc3cc(c4ccccc4c3N2)NCCCCCCNC(=O)c5ccc(c(c5)[N+](=O)[O-])C(=O)C6=C(CCCC6=O)O" # _pdbx_chem_comp_identifier.comp_id 7RQ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[6-[[9-(dimethylamino)-12~{H}-benzo[a]phenoxazin-5-yl]amino]hexyl]-3-nitro-4-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7RQ "Create component" 2021-10-15 PDBJ 7RQ "Modify coordinates" 2021-11-08 PDBJ 7RQ "Modify formula" 2021-11-08 PDBJ 7RQ "Modify name" 2021-11-08 PDBJ 7RQ "Initial release" 2022-09-21 RCSB #