data_7SR # _chem_comp.id 7SR _chem_comp.name "(6S,9aS)-N-[(4-bromophenyl)methyl]-6-[(2S)-butan-2-yl]-8-(naphthalen-1-ylmethyl)-4,7-bis(oxidanylidene)-3,6,9,9a-tetrahydro-2H-pyrazino[1,2-a]pyrimidine-1-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H33 Br N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-10-21 _chem_comp.pdbx_modified_date 2022-06-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 577.512 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 7SR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7VP9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7SR C10 C1 C 0 1 N N N 67.561 -6.117 53.446 2.879 -3.584 -1.877 C10 7SR 1 7SR C17 C2 C 0 1 N N S 65.910 -4.110 55.699 1.523 -0.939 0.349 C17 7SR 2 7SR C20 C3 C 0 1 N N N 65.302 -1.945 52.682 4.510 0.727 1.982 C20 7SR 3 7SR C21 C4 C 0 1 Y N N 63.963 -2.516 52.216 5.050 1.577 0.862 C21 7SR 4 7SR C22 C5 C 0 1 Y N N 63.937 -3.487 51.222 4.308 2.672 0.386 C22 7SR 5 7SR C24 C6 C 0 1 Y N N 65.101 -4.924 49.676 2.368 4.069 0.448 C24 7SR 6 7SR C26 C7 C 0 1 Y N N 62.696 -5.009 49.776 4.092 4.556 -1.145 C26 7SR 7 7SR C28 C8 C 0 1 Y N N 61.533 -3.540 51.349 6.085 3.132 -1.217 C28 7SR 8 7SR C2 C9 C 0 1 N N N 65.081 -5.781 57.483 -0.632 0.064 -0.171 C2 7SR 9 7SR C4 C10 C 0 1 N N N 65.370 -3.269 57.949 -0.613 -1.782 1.423 C4 7SR 10 7SR C5 C11 C 0 1 N N N 66.786 -3.000 58.315 -0.277 -3.212 0.980 C5 7SR 11 7SR C6 C12 C 0 1 N N N 67.779 -3.145 57.146 1.214 -3.341 0.836 C6 7SR 12 7SR C8 C13 C 0 1 N N S 68.002 -3.880 54.718 3.448 -2.543 0.322 C8 7SR 13 7SR C9 C14 C 0 1 N N S 68.445 -5.332 54.418 3.765 -2.554 -1.175 C9 7SR 14 7SR C11 C15 C 0 1 N N N 68.022 -7.499 52.975 3.106 -3.508 -3.388 C11 7SR 15 7SR C18 C16 C 0 1 N N N 65.273 -2.923 54.998 2.207 -0.052 1.393 C18 7SR 16 7SR C23 C17 C 0 1 Y N N 65.124 -3.947 50.665 3.057 3.000 0.934 C23 7SR 17 7SR C25 C18 C 0 1 Y N N 63.893 -5.454 49.230 2.884 4.844 -0.589 C25 7SR 18 7SR C27 C19 C 0 1 Y N N 62.720 -4.003 50.792 4.833 3.461 -0.669 C27 7SR 19 7SR C29 C20 C 0 1 Y N N 61.559 -2.563 52.337 6.777 2.068 -0.727 C29 7SR 20 7SR C30 C21 C 0 1 Y N N 62.773 -2.045 52.770 6.260 1.293 0.310 C30 7SR 21 7SR C31 C22 C 0 1 N N N 67.334 -3.180 53.604 4.213 -1.437 0.995 C31 7SR 22 7SR C35 C23 C 0 1 N N N 64.317 -7.366 59.264 -2.749 1.002 -0.928 C35 7SR 23 7SR C36 C24 C 0 1 Y N N 62.847 -7.771 59.071 -4.220 0.811 -0.660 C36 7SR 24 7SR C37 C25 C 0 1 Y N N 62.192 -8.374 60.138 -4.843 1.543 0.333 C37 7SR 25 7SR C38 C26 C 0 1 Y N N 60.872 -8.748 59.996 -6.192 1.368 0.579 C38 7SR 26 7SR C39 C27 C 0 1 Y N N 60.230 -8.525 58.787 -6.919 0.460 -0.171 C39 7SR 27 7SR C41 C28 C 0 1 Y N N 60.890 -7.928 57.717 -6.295 -0.272 -1.165 C41 7SR 28 7SR C42 C29 C 0 1 Y N N 62.214 -7.549 57.859 -4.947 -0.092 -1.413 C42 7SR 29 7SR C46 C30 C 0 1 N N N 68.776 -6.143 55.674 5.236 -2.921 -1.382 C46 7SR 30 7SR N3 N1 N 0 1 N N N 65.385 -4.400 57.052 0.074 -0.858 0.513 N3 7SR 31 7SR N7 N2 N 0 1 N N N 67.289 -3.733 55.866 2.005 -2.312 0.520 N7 7SR 32 7SR N19 N3 N 0 1 N N N 65.937 -2.684 53.777 3.639 -0.314 1.430 N19 7SR 33 7SR N34 N4 N 0 1 N N N 64.635 -5.995 58.847 -1.977 0.073 -0.099 N34 7SR 34 7SR O1 O1 O 0 1 N N N 65.165 -6.705 56.685 -0.054 0.889 -0.853 O1 7SR 35 7SR O32 O2 O 0 1 N N N 67.949 -2.980 52.572 5.409 -1.572 1.149 O32 7SR 36 7SR O33 O3 O 0 1 N N N 68.940 -2.797 57.269 1.720 -4.429 1.014 O33 7SR 37 7SR BR1 BR1 BR 0 0 N N N 58.359 -9.067 58.609 -8.764 0.220 0.165 BR1 7SR 38 7SR H1 H1 H 0 1 N N N 67.438 -5.495 52.547 3.132 -4.583 -1.521 H1 7SR 39 7SR H2 H2 H 0 1 N N N 66.585 -6.252 53.935 1.832 -3.374 -1.656 H2 7SR 40 7SR H3 H3 H 0 1 N N N 65.826 -5.003 55.062 1.794 -0.584 -0.645 H3 7SR 41 7SR H4 H4 H 0 1 N N N 65.991 -1.945 51.825 5.338 0.262 2.517 H4 7SR 42 7SR H5 H5 H 0 1 N N N 65.135 -0.911 53.018 3.938 1.351 2.669 H5 7SR 43 7SR H6 H6 H 0 1 N N N 66.029 -5.275 49.250 1.406 4.319 0.871 H6 7SR 44 7SR H7 H7 H 0 1 N N N 61.756 -5.419 49.437 4.480 5.165 -1.947 H7 7SR 45 7SR H8 H8 H 0 1 N N N 60.588 -3.941 51.013 6.498 3.724 -2.021 H8 7SR 46 7SR H9 H9 H 0 1 N N N 64.934 -2.392 57.448 -1.690 -1.622 1.368 H9 7SR 47 7SR H10 H10 H 0 1 N N N 64.784 -3.506 58.849 -0.267 -1.622 2.444 H10 7SR 48 7SR H11 H11 H 0 1 N N N 67.078 -3.707 59.106 -0.634 -3.919 1.729 H11 7SR 49 7SR H12 H12 H 0 1 N N N 66.854 -1.972 58.699 -0.757 -3.420 0.024 H12 7SR 50 7SR H13 H13 H 0 1 N N N 68.946 -3.335 54.870 3.728 -3.501 0.761 H13 7SR 51 7SR H14 H14 H 0 1 N N N 69.407 -5.224 53.895 3.575 -1.566 -1.593 H14 7SR 52 7SR H15 H15 H 0 1 N N N 67.275 -7.920 52.286 2.853 -2.509 -3.743 H15 7SR 53 7SR H16 H16 H 0 1 N N N 68.988 -7.406 52.457 4.153 -3.718 -3.609 H16 7SR 54 7SR H17 H17 H 0 1 N N N 68.135 -8.164 53.844 2.474 -4.242 -3.888 H17 7SR 55 7SR H18 H18 H 0 1 N N N 65.353 -2.033 55.639 2.039 0.995 1.139 H18 7SR 56 7SR H19 H19 H 0 1 N N N 64.212 -3.139 54.802 1.780 -0.257 2.374 H19 7SR 57 7SR H20 H20 H 0 1 N N N 66.068 -3.544 51.002 2.645 2.408 1.738 H20 7SR 58 7SR H21 H21 H 0 1 N N N 63.887 -6.211 48.460 2.316 5.686 -0.956 H21 7SR 59 7SR H22 H22 H 0 1 N N N 60.635 -2.206 52.768 7.741 1.821 -1.147 H22 7SR 60 7SR H23 H23 H 0 1 N N N 62.795 -1.281 53.533 6.830 0.453 0.680 H23 7SR 61 7SR H24 H24 H 0 1 N N N 64.942 -8.056 58.678 -2.543 0.808 -1.980 H24 7SR 62 7SR H25 H25 H 0 1 N N N 64.562 -7.465 60.332 -2.466 2.026 -0.685 H25 7SR 63 7SR H26 H26 H 0 1 N N N 62.711 -8.548 61.069 -4.275 2.251 0.918 H26 7SR 64 7SR H27 H27 H 0 1 N N N 60.344 -9.210 60.817 -6.678 1.939 1.355 H27 7SR 65 7SR H28 H28 H 0 1 N N N 60.373 -7.762 56.783 -6.863 -0.978 -1.753 H28 7SR 66 7SR H29 H29 H 0 1 N N N 62.744 -7.088 57.039 -4.460 -0.664 -2.189 H29 7SR 67 7SR H30 H30 H 0 1 N N N 69.411 -5.542 56.342 5.484 -2.844 -2.441 H30 7SR 68 7SR H31 H31 H 0 1 N N N 67.844 -6.409 56.195 5.865 -2.237 -0.811 H31 7SR 69 7SR H32 H32 H 0 1 N N N 69.311 -7.061 55.387 5.407 -3.942 -1.041 H32 7SR 70 7SR H33 H33 H 0 1 N N N 64.547 -5.230 59.485 -2.435 -0.536 0.501 H33 7SR 71 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7SR C25 C24 DOUB Y N 1 7SR C25 C26 SING Y N 2 7SR C24 C23 SING Y N 3 7SR C26 C27 DOUB Y N 4 7SR C23 C22 DOUB Y N 5 7SR C27 C22 SING Y N 6 7SR C27 C28 SING Y N 7 7SR C22 C21 SING Y N 8 7SR C28 C29 DOUB Y N 9 7SR C21 C20 SING N N 10 7SR C21 C30 DOUB Y N 11 7SR C29 C30 SING Y N 12 7SR O32 C31 DOUB N N 13 7SR C20 N19 SING N N 14 7SR C11 C10 SING N N 15 7SR C10 C9 SING N N 16 7SR C31 N19 SING N N 17 7SR C31 C8 SING N N 18 7SR N19 C18 SING N N 19 7SR C9 C8 SING N N 20 7SR C9 C46 SING N N 21 7SR C8 N7 SING N N 22 7SR C18 C17 SING N N 23 7SR C17 N7 SING N N 24 7SR C17 N3 SING N N 25 7SR N7 C6 SING N N 26 7SR O1 C2 DOUB N N 27 7SR N3 C2 SING N N 28 7SR N3 C4 SING N N 29 7SR C6 O33 DOUB N N 30 7SR C6 C5 SING N N 31 7SR C2 N34 SING N N 32 7SR C41 C42 DOUB Y N 33 7SR C41 C39 SING Y N 34 7SR C42 C36 SING Y N 35 7SR C4 C5 SING N N 36 7SR BR1 C39 SING N N 37 7SR C39 C38 DOUB Y N 38 7SR N34 C35 SING N N 39 7SR C36 C35 SING N N 40 7SR C36 C37 DOUB Y N 41 7SR C38 C37 SING Y N 42 7SR C10 H1 SING N N 43 7SR C10 H2 SING N N 44 7SR C17 H3 SING N N 45 7SR C20 H4 SING N N 46 7SR C20 H5 SING N N 47 7SR C24 H6 SING N N 48 7SR C26 H7 SING N N 49 7SR C28 H8 SING N N 50 7SR C4 H9 SING N N 51 7SR C4 H10 SING N N 52 7SR C5 H11 SING N N 53 7SR C5 H12 SING N N 54 7SR C8 H13 SING N N 55 7SR C9 H14 SING N N 56 7SR C11 H15 SING N N 57 7SR C11 H16 SING N N 58 7SR C11 H17 SING N N 59 7SR C18 H18 SING N N 60 7SR C18 H19 SING N N 61 7SR C23 H20 SING N N 62 7SR C25 H21 SING N N 63 7SR C29 H22 SING N N 64 7SR C30 H23 SING N N 65 7SR C35 H24 SING N N 66 7SR C35 H25 SING N N 67 7SR C37 H26 SING N N 68 7SR C38 H27 SING N N 69 7SR C41 H28 SING N N 70 7SR C42 H29 SING N N 71 7SR C46 H30 SING N N 72 7SR C46 H31 SING N N 73 7SR C46 H32 SING N N 74 7SR N34 H33 SING N N 75 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7SR InChI InChI 1.03 "InChI=1S/C30H33BrN4O3/c1-3-20(2)28-29(37)33(18-23-9-6-8-22-7-4-5-10-25(22)23)19-26-34(16-15-27(36)35(26)28)30(38)32-17-21-11-13-24(31)14-12-21/h4-14,20,26,28H,3,15-19H2,1-2H3,(H,32,38)/t20-,26+,28-/m0/s1" 7SR InChIKey InChI 1.03 XXPDBCOMEKQMAR-GFNGZDJJSA-N 7SR SMILES_CANONICAL CACTVS 3.385 "CC[C@H](C)[C@@H]1N2[C@H](CN(Cc3cccc4ccccc34)C1=O)N(CCC2=O)C(=O)NCc5ccc(Br)cc5" 7SR SMILES CACTVS 3.385 "CC[CH](C)[CH]1N2[CH](CN(Cc3cccc4ccccc34)C1=O)N(CCC2=O)C(=O)NCc5ccc(Br)cc5" 7SR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H](C)[C@H]1C(=O)N(C[C@H]2N1C(=O)CCN2C(=O)NCc3ccc(cc3)Br)Cc4cccc5c4cccc5" 7SR SMILES "OpenEye OEToolkits" 2.0.7 "CCC(C)C1C(=O)N(CC2N1C(=O)CCN2C(=O)NCc3ccc(cc3)Br)Cc4cccc5c4cccc5" # _pdbx_chem_comp_identifier.comp_id 7SR _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(6~{S},9~{a}~{S})-~{N}-[(4-bromophenyl)methyl]-6-[(2~{S})-butan-2-yl]-8-(naphthalen-1-ylmethyl)-4,7-bis(oxidanylidene)-3,6,9,9~{a}-tetrahydro-2~{H}-pyrazino[1,2-a]pyrimidine-1-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7SR "Create component" 2021-10-21 PDBJ 7SR "Initial release" 2022-06-08 RCSB ##