data_7U9 # _chem_comp.id 7U9 _chem_comp.name "2-[(3R)-3-azanylpyrrolidin-1-yl]carbonyl-1H-benzimidazole-4-carboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H15 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-12-12 _chem_comp.pdbx_modified_date 2017-01-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 273.291 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 7U9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5WS1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7U9 CAJ C1 C 0 1 N N N -12.253 -7.716 8.902 -3.919 0.531 -0.227 CAJ 7U9 1 7U9 CAS C2 C 0 1 N N R -13.543 -7.651 8.075 -4.456 -0.915 -0.282 CAS 7U9 2 7U9 NAB N1 N 0 1 N N N -14.607 -8.615 8.469 -5.667 -1.052 0.539 NAB 7U9 3 7U9 CAH C3 C 0 1 N N N -12.996 -7.800 6.692 -3.289 -1.742 0.318 CAH 7U9 4 7U9 CAI C4 C 0 1 N N N -12.214 -6.474 6.779 -2.055 -0.969 -0.211 CAI 7U9 5 7U9 NAT N2 N 0 1 N N N -11.374 -6.744 8.097 -2.453 0.454 -0.166 NAT 7U9 6 7U9 CAN C5 C 0 1 N N N -10.133 -6.432 8.632 -1.610 1.503 -0.087 CAN 7U9 7 7U9 OAD O1 O 0 1 N N N -9.822 -6.904 9.719 -2.050 2.635 -0.058 OAD 7U9 8 7U9 CAP C6 C 0 1 Y N N -9.326 -5.400 8.232 -0.148 1.275 -0.037 CAP 7U9 9 7U9 NAL N3 N 0 1 Y N N -8.144 -5.020 8.793 0.799 2.259 0.044 NAL 7U9 10 7U9 NAK N4 N 0 1 Y N N -9.699 -4.487 7.372 0.434 0.101 -0.057 NAK 7U9 11 7U9 CAR C7 C 0 1 Y N N -8.744 -3.540 7.254 1.765 0.254 0.003 CAR 7U9 12 7U9 CAQ C8 C 0 1 Y N N -7.782 -3.866 8.153 2.027 1.636 0.068 CAQ 7U9 13 7U9 CAG C9 C 0 1 Y N N -6.681 -3.158 8.241 3.337 2.093 0.139 CAG 7U9 14 7U9 CAE C10 C 0 1 Y N N -6.510 -1.954 7.538 4.385 1.195 0.144 CAE 7U9 15 7U9 CAF C11 C 0 1 Y N N -7.518 -1.648 6.595 4.149 -0.168 0.080 CAF 7U9 16 7U9 CAO C12 C 0 1 Y N N -8.656 -2.432 6.438 2.848 -0.655 0.013 CAO 7U9 17 7U9 CAM C13 C 0 1 N N N -9.639 -2.041 5.459 2.600 -2.107 -0.054 CAM 7U9 18 7U9 OAC O2 O 0 1 N N N -9.396 -1.203 4.566 1.461 -2.527 -0.113 OAC 7U9 19 7U9 NAA N5 N 0 1 N N N -10.814 -2.669 5.355 3.637 -2.968 -0.051 NAA 7U9 20 7U9 H1 H1 H 0 1 N N N -12.410 -7.366 9.933 -4.225 1.074 -1.121 H1 7U9 21 7U9 H2 H2 H 0 1 N N N -11.830 -8.731 8.920 -4.301 1.034 0.661 H2 7U9 22 7U9 H3 H3 H 0 1 N N N -13.950 -6.634 8.173 -4.654 -1.214 -1.312 H3 7U9 23 7U9 H4 H4 H 0 1 N N N -14.898 -8.426 9.407 -6.404 -0.452 0.199 H4 7U9 24 7U9 H5 H5 H 0 1 N N N -15.388 -8.520 7.852 -5.971 -2.013 0.577 H5 7U9 25 7U9 H7 H7 H 0 1 N N N -13.771 -7.801 5.912 -3.320 -1.730 1.408 H7 7U9 26 7U9 H8 H8 H 0 1 N N N -12.351 -8.682 6.569 -3.301 -2.764 -0.060 H8 7U9 27 7U9 H9 H9 H 0 1 N N N -11.565 -6.323 5.904 -1.194 -1.141 0.435 H9 7U9 28 7U9 H10 H10 H 0 1 N N N -12.885 -5.610 6.891 -1.829 -1.269 -1.234 H10 7U9 29 7U9 H11 H11 H 0 1 N N N -7.644 -5.488 9.522 0.637 3.214 0.077 H11 7U9 30 7U9 H13 H13 H 0 1 N N N -5.881 -3.512 8.874 3.536 3.153 0.189 H13 7U9 31 7U9 H14 H14 H 0 1 N N N -5.664 -1.304 7.707 5.400 1.559 0.199 H14 7U9 32 7U9 H15 H15 H 0 1 N N N -7.400 -0.773 5.973 4.980 -0.857 0.085 H15 7U9 33 7U9 H16 H16 H 0 1 N N N -11.430 -2.454 4.597 4.546 -2.633 -0.004 H16 7U9 34 7U9 H17 H17 H 0 1 N N N -11.077 -3.354 6.035 3.474 -3.924 -0.096 H17 7U9 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7U9 OAC CAM DOUB N N 1 7U9 NAA CAM SING N N 2 7U9 CAM CAO SING N N 3 7U9 CAO CAF SING Y N 4 7U9 CAO CAR DOUB Y N 5 7U9 CAF CAE DOUB Y N 6 7U9 CAH CAI SING N N 7 7U9 CAH CAS SING N N 8 7U9 CAI NAT SING N N 9 7U9 CAR NAK SING Y N 10 7U9 CAR CAQ SING Y N 11 7U9 NAK CAP DOUB Y N 12 7U9 CAE CAG SING Y N 13 7U9 CAS NAB SING N N 14 7U9 CAS CAJ SING N N 15 7U9 NAT CAN SING N N 16 7U9 NAT CAJ SING N N 17 7U9 CAQ CAG DOUB Y N 18 7U9 CAQ NAL SING Y N 19 7U9 CAP CAN SING N N 20 7U9 CAP NAL SING Y N 21 7U9 CAN OAD DOUB N N 22 7U9 CAJ H1 SING N N 23 7U9 CAJ H2 SING N N 24 7U9 CAS H3 SING N N 25 7U9 NAB H4 SING N N 26 7U9 NAB H5 SING N N 27 7U9 CAH H7 SING N N 28 7U9 CAH H8 SING N N 29 7U9 CAI H9 SING N N 30 7U9 CAI H10 SING N N 31 7U9 NAL H11 SING N N 32 7U9 CAG H13 SING N N 33 7U9 CAE H14 SING N N 34 7U9 CAF H15 SING N N 35 7U9 NAA H16 SING N N 36 7U9 NAA H17 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7U9 InChI InChI 1.03 "InChI=1S/C13H15N5O2/c14-7-4-5-18(6-7)13(20)12-16-9-3-1-2-8(11(15)19)10(9)17-12/h1-3,7H,4-6,14H2,(H2,15,19)(H,16,17)/t7-/m1/s1" 7U9 InChIKey InChI 1.03 WHEDMAICUFWICE-SSDOTTSWSA-N 7U9 SMILES_CANONICAL CACTVS 3.385 "N[C@@H]1CCN(C1)C(=O)c2[nH]c3cccc(C(N)=O)c3n2" 7U9 SMILES CACTVS 3.385 "N[CH]1CCN(C1)C(=O)c2[nH]c3cccc(C(N)=O)c3n2" 7U9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc(c2c(c1)[nH]c(n2)C(=O)N3CC[C@H](C3)N)C(=O)N" 7U9 SMILES "OpenEye OEToolkits" 2.0.6 "c1cc(c2c(c1)[nH]c(n2)C(=O)N3CCC(C3)N)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 7U9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-[(3~{R})-3-azanylpyrrolidin-1-yl]carbonyl-1~{H}-benzimidazole-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7U9 "Create component" 2016-12-12 PDBJ 7U9 "Initial release" 2017-01-25 RCSB #