data_7UB # _chem_comp.id 7UB _chem_comp.name "(3'R)-2-[(cyclopropylmethyl)amino]-6-(4-methoxyphenyl)-1'-[(1H-pyrazol-5-yl)methyl]-5,6-dihydro-7H-spiro[pyrido[4,3-d]pyrimidine-8,3'-pyrrolidin]-7-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H29 N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-08-20 _chem_comp.pdbx_modified_date 2022-03-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 459.543 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 7UB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7RW7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7UB C4 C1 C 0 1 Y N N -3.599 6.180 -45.582 1.268 -0.720 0.251 C4 7UB 1 7UB C5 C2 C 0 1 Y N N -4.005 6.554 -46.837 0.945 -2.050 0.442 C5 7UB 2 7UB C6 C3 C 0 1 Y N N -5.354 7.042 -47.019 1.962 -2.994 0.395 C6 7UB 3 7UB N1 N1 N 0 1 Y N N -6.147 7.049 -45.927 3.203 -2.597 0.170 N1 7UB 4 7UB N3 N2 N 0 1 Y N N -4.449 6.249 -44.444 2.532 -0.390 0.025 N3 7UB 5 7UB C2 C4 C 0 1 Y N N -5.664 6.723 -44.683 3.480 -1.314 -0.008 C2 7UB 6 7UB CAB C5 C 0 1 N N N -1.290 5.523 -46.487 -1.155 -0.216 0.088 CAB 7UB 7 7UB CAC C6 C 0 1 N N R -2.285 5.515 -45.282 0.216 0.345 0.288 CAC 7UB 8 7UB CAF C7 C 0 1 N N N -3.134 6.501 -48.023 -0.464 -2.493 0.701 CAF 7UB 9 7UB CAL C8 C 0 1 N N N -2.207 4.042 -44.784 0.513 1.424 -0.777 CAL 7UB 10 7UB CAN C9 C 0 1 N N N -1.749 5.462 -43.036 0.065 2.597 1.229 CAN 7UB 11 7UB CAO C10 C 0 1 N N N -1.595 6.288 -44.147 0.291 1.123 1.616 CAO 7UB 12 7UB CAP C11 C 0 1 N N N -2.187 3.059 -42.777 0.398 3.856 -0.823 CAP 7UB 13 7UB CAQ C12 C 0 1 N N N -5.892 6.719 -42.297 5.851 -1.940 -0.285 CAQ 7UB 14 7UB CAS C13 C 0 1 Y N N -0.918 6.205 -48.887 -2.752 -1.936 0.026 CAS 7UB 15 7UB CAT C14 C 0 1 Y N N -1.277 5.595 -50.056 -3.122 -2.363 -1.242 CAT 7UB 16 7UB CAU C15 C 0 1 Y N N -0.523 5.798 -51.206 -4.414 -2.791 -1.477 CAU 7UB 17 7UB CAV C16 C 0 1 Y N N 0.550 6.675 -51.128 -5.342 -2.794 -0.445 CAV 7UB 18 7UB CAW C17 C 0 1 Y N N 0.931 7.288 -49.931 -4.972 -2.368 0.822 CAW 7UB 19 7UB CAX C18 C 0 1 Y N N 0.198 7.072 -48.786 -3.681 -1.940 1.058 CAX 7UB 20 7UB CAY C19 C 0 1 N N N -6.263 5.449 -41.625 7.193 -1.256 -0.553 CAY 7UB 21 7UB CAZ C20 C 0 1 N N N -6.117 4.795 -40.440 8.263 -1.348 0.537 CAZ 7UB 22 7UB CBA C21 C 0 1 N N N -7.185 4.502 -41.287 8.415 -2.155 -0.754 CBA 7UB 23 7UB CBB C22 C 0 1 Y N N -1.522 2.847 -41.384 -0.461 5.034 -0.442 CBB 7UB 24 7UB CBE C23 C 0 1 Y N N -0.952 3.035 -39.208 -2.004 6.637 -0.467 CBE 7UB 25 7UB CBF C24 C 0 1 Y N N -1.844 3.501 -40.177 -1.467 5.559 -1.178 CBF 7UB 26 7UB CBH C25 C 0 1 N N N 0.957 6.344 -53.504 -7.516 -3.191 0.431 CBH 7UB 27 7UB NAA N3 N 0 1 N N N -1.781 6.038 -47.749 -1.439 -1.508 0.266 NAA 7UB 28 7UB NAK N4 N 0 1 N N N -6.546 6.923 -43.597 4.790 -0.931 -0.239 NAK 7UB 29 7UB NAM N5 N 0 1 N N N -1.723 3.980 -43.549 -0.160 2.632 -0.233 NAM 7UB 30 7UB NBC N6 N 0 1 Y N N -0.491 2.074 -41.182 -0.368 5.751 0.698 NBC 7UB 31 7UB NBD N7 N 0 1 Y N N -0.187 2.172 -39.849 -1.346 6.753 0.658 NBD 7UB 32 7UB OAR O1 O 0 1 N N N -0.175 5.162 -46.435 -2.044 0.531 -0.260 OAR 7UB 33 7UB OBG O2 O 0 1 N N N 1.325 6.950 -52.260 -6.614 -3.215 -0.677 OBG 7UB 34 7UB H1 H1 H 0 1 N N N -5.709 7.384 -47.980 1.741 -4.041 0.540 H1 7UB 35 7UB H2 H2 H 0 1 N N N -3.073 7.512 -48.451 -0.640 -3.425 0.166 H2 7UB 36 7UB H3 H3 H 0 1 N N N -3.590 5.819 -48.756 -0.594 -2.670 1.769 H3 7UB 37 7UB H4 H4 H 0 1 N N N -3.216 3.605 -44.797 1.587 1.589 -0.867 H4 7UB 38 7UB H5 H5 H 0 1 N N N -1.551 3.470 -45.456 0.084 1.144 -1.739 H5 7UB 39 7UB H6 H6 H 0 1 N N N -0.926 5.629 -42.326 -0.809 2.989 1.749 H6 7UB 40 7UB H7 H7 H 0 1 N N N -2.709 5.672 -42.541 0.945 3.188 1.486 H7 7UB 41 7UB H8 H8 H 0 1 N N N -0.530 6.446 -44.372 -0.491 0.787 2.297 H8 7UB 42 7UB H9 H9 H 0 1 N N N -2.083 7.260 -43.983 1.272 0.998 2.074 H9 7UB 43 7UB H10 H10 H 0 1 N N N -3.247 3.290 -42.598 0.421 3.759 -1.908 H10 7UB 44 7UB H11 H11 H 0 1 N N N -2.106 2.107 -43.323 1.411 4.010 -0.451 H11 7UB 45 7UB H12 H12 H 0 1 N N N -4.803 6.722 -42.454 5.640 -2.652 -1.082 H12 7UB 46 7UB H13 H13 H 0 1 N N N -6.169 7.553 -41.636 5.895 -2.464 0.669 H13 7UB 47 7UB H14 H14 H 0 1 N N N -2.147 4.955 -50.086 -2.400 -2.360 -2.046 H14 7UB 48 7UB H15 H15 H 0 1 N N N -0.764 5.291 -52.129 -4.702 -3.123 -2.463 H15 7UB 49 7UB H16 H16 H 0 1 N N N 1.799 7.930 -49.904 -5.695 -2.370 1.625 H16 7UB 50 7UB H17 H17 H 0 1 N N N 0.462 7.543 -47.851 -3.392 -1.612 2.046 H17 7UB 51 7UB H18 H18 H 0 1 N N N -5.610 4.796 -42.223 7.144 -0.336 -1.134 H18 7UB 52 7UB H19 H19 H 0 1 N N N -5.302 4.068 -40.308 8.918 -0.488 0.673 H19 7UB 53 7UB H20 H20 H 0 1 N N N -6.294 5.324 -39.492 8.010 -1.895 1.445 H20 7UB 54 7UB H21 H21 H 0 1 N N N -8.207 4.800 -41.011 8.263 -3.232 -0.696 H21 7UB 55 7UB H22 H22 H 0 1 N N N -7.216 3.544 -41.826 9.171 -1.825 -1.468 H22 7UB 56 7UB H23 H23 H 0 1 N N N -0.900 3.318 -38.167 -2.823 7.264 -0.789 H23 7UB 57 7UB H24 H24 H 0 1 N N N -2.631 4.225 -40.029 -1.797 5.208 -2.145 H24 7UB 58 7UB H25 H25 H 0 1 N N N 1.661 6.659 -54.288 -8.494 -3.550 0.110 H25 7UB 59 7UB H26 H26 H 0 1 N N N 0.988 5.249 -53.402 -7.135 -3.834 1.224 H26 7UB 60 7UB H27 H27 H 0 1 N N N -0.061 6.658 -53.778 -7.609 -2.171 0.803 H27 7UB 61 7UB H28 H28 H 0 1 N N N -6.897 7.859 -43.636 5.005 0.006 -0.371 H28 7UB 62 7UB H30 H30 H 0 1 N N N -0.016 1.519 -41.865 0.264 5.599 1.418 H30 7UB 63 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7UB CBH OBG SING N N 1 7UB OBG CAV SING N N 2 7UB CAU CAV DOUB Y N 3 7UB CAU CAT SING Y N 4 7UB CAV CAW SING Y N 5 7UB CAT CAS DOUB Y N 6 7UB CAW CAX DOUB Y N 7 7UB CAS CAX SING Y N 8 7UB CAS NAA SING N N 9 7UB CAF NAA SING N N 10 7UB CAF C5 SING N N 11 7UB NAA CAB SING N N 12 7UB C6 C5 DOUB Y N 13 7UB C6 N1 SING Y N 14 7UB C5 C4 SING Y N 15 7UB CAB OAR DOUB N N 16 7UB CAB CAC SING N N 17 7UB N1 C2 DOUB Y N 18 7UB C4 CAC SING N N 19 7UB C4 N3 DOUB Y N 20 7UB CAC CAL SING N N 21 7UB CAC CAO SING N N 22 7UB CAL NAM SING N N 23 7UB C2 N3 SING Y N 24 7UB C2 NAK SING N N 25 7UB CAO CAN SING N N 26 7UB NAK CAQ SING N N 27 7UB NAM CAN SING N N 28 7UB NAM CAP SING N N 29 7UB CAP CBB SING N N 30 7UB CAQ CAY SING N N 31 7UB CAY CBA SING N N 32 7UB CAY CAZ SING N N 33 7UB CBB NBC SING Y N 34 7UB CBB CBF DOUB Y N 35 7UB CBA CAZ SING N N 36 7UB NBC NBD SING Y N 37 7UB CBF CBE SING Y N 38 7UB NBD CBE DOUB Y N 39 7UB C6 H1 SING N N 40 7UB CAF H2 SING N N 41 7UB CAF H3 SING N N 42 7UB CAL H4 SING N N 43 7UB CAL H5 SING N N 44 7UB CAN H6 SING N N 45 7UB CAN H7 SING N N 46 7UB CAO H8 SING N N 47 7UB CAO H9 SING N N 48 7UB CAP H10 SING N N 49 7UB CAP H11 SING N N 50 7UB CAQ H12 SING N N 51 7UB CAQ H13 SING N N 52 7UB CAT H14 SING N N 53 7UB CAU H15 SING N N 54 7UB CAW H16 SING N N 55 7UB CAX H17 SING N N 56 7UB CAY H18 SING N N 57 7UB CAZ H19 SING N N 58 7UB CAZ H20 SING N N 59 7UB CBA H21 SING N N 60 7UB CBA H22 SING N N 61 7UB CBE H23 SING N N 62 7UB CBF H24 SING N N 63 7UB CBH H25 SING N N 64 7UB CBH H26 SING N N 65 7UB CBH H27 SING N N 66 7UB NAK H28 SING N N 67 7UB NBC H30 SING N N 68 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7UB SMILES ACDLabs 12.01 "COc1ccc(cc1)N1Cc2cnc(NCC3CC3)nc2C2(CN(Cc3ccn[NH]3)CC2)C1=O" 7UB InChI InChI 1.03 "InChI=1S/C25H29N7O2/c1-34-21-6-4-20(5-7-21)32-14-18-13-27-24(26-12-17-2-3-17)29-22(18)25(23(32)33)9-11-31(16-25)15-19-8-10-28-30-19/h4-8,10,13,17H,2-3,9,11-12,14-16H2,1H3,(H,28,30)(H,26,27,29)/t25-/m1/s1" 7UB InChIKey InChI 1.03 CBHUSCSYQHQLDW-RUZDIDTESA-N 7UB SMILES_CANONICAL CACTVS 3.385 "COc1ccc(cc1)N2Cc3cnc(NCC4CC4)nc3[C@]5(CCN(Cc6[nH]ncc6)C5)C2=O" 7UB SMILES CACTVS 3.385 "COc1ccc(cc1)N2Cc3cnc(NCC4CC4)nc3[C]5(CCN(Cc6[nH]ncc6)C5)C2=O" 7UB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1)N2Cc3cnc(nc3[C@@]4(C2=O)CCN(C4)Cc5ccn[nH]5)NCC6CC6" 7UB SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1)N2Cc3cnc(nc3C4(C2=O)CCN(C4)Cc5ccn[nH]5)NCC6CC6" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 7UB "SYSTEMATIC NAME" ACDLabs 12.01 "(3'R)-2-[(cyclopropylmethyl)amino]-6-(4-methoxyphenyl)-1'-[(1H-pyrazol-5-yl)methyl]-5,6-dihydro-7H-spiro[pyrido[4,3-d]pyrimidine-8,3'-pyrrolidin]-7-one" 7UB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(8~{R})-2-(cyclopropylmethylamino)-6-(4-methoxyphenyl)-1'-(1~{H}-pyrazol-5-ylmethyl)spiro[5~{H}-pyrido[4,3-d]pyrimidine-8,3'-pyrrolidine]-7-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7UB "Create component" 2021-08-20 RCSB 7UB "Initial release" 2022-03-23 RCSB ##