data_7V5
#
_chem_comp.id 7V5
_chem_comp.name "~{N}-(5~{H}-indolo[3,2-b]quinolin-11-yl)-~{N}',~{N}'-dimethyl-propane-1,3-diamine"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H24 N4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 2
_chem_comp.pdbx_initial_date 2021-09-07
_chem_comp.pdbx_modified_date 2021-12-24
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 320.431
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 7V5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7PNG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
7V5 C4 C1 C 0 1 Y N N 32.159 37.895 30.636 2.042 -3.698 -0.471 C4 7V5 1
7V5 C6 C2 C 0 1 Y N N 30.868 32.625 30.072 4.421 1.394 -0.553 C6 7V5 2
7V5 C7 C3 C 0 1 Y N N 30.544 31.259 29.926 4.886 2.691 -0.529 C7 7V5 3
7V5 C8 C4 C 0 1 Y N N 31.516 30.316 29.521 4.056 3.723 -0.119 C8 7V5 4
7V5 C3 C5 C 0 1 Y N N 32.941 39.054 30.738 1.111 -4.676 -0.302 C3 7V5 5
7V5 C4A C6 C 0 1 Y N N 32.742 36.654 30.327 1.712 -2.361 -0.182 C4A 7V5 6
7V5 N5 N1 N 1 1 Y N N 32.065 35.428 30.239 2.610 -1.387 -0.342 N5 7V5 7
7V5 C5A C7 C 0 1 Y N N 32.776 34.300 29.902 2.321 -0.122 -0.076 C5A 7V5 8
7V5 C6A C8 C 0 1 Y N N 32.197 33.024 29.817 3.111 1.122 -0.164 C6A 7V5 9
7V5 C9 C9 C 0 1 Y N N 32.843 30.717 29.259 2.759 3.468 0.269 C9 7V5 10
7V5 C9A C10 C 0 1 Y N N 33.180 32.065 29.423 2.270 2.164 0.251 C9A 7V5 11
7V5 N10 N2 N 0 1 Y N N 34.347 32.834 29.298 1.038 1.630 0.579 N10 7V5 12
7V5 C10A C11 C 0 0 Y N N 34.094 34.166 29.610 1.047 0.255 0.389 C10A 7V5 13
7V5 C11A C12 C 0 0 Y N N 34.891 35.321 29.699 0.071 -0.719 0.574 C11A 7V5 14
7V5 N11 N3 N 0 1 N N N 36.278 35.314 29.465 -1.196 -0.383 1.031 N11 7V5 15
7V5 "C1'" C13 C 0 1 N N N 37.069 34.130 29.101 -2.056 0.056 -0.076 "C1'" 7V5 16
7V5 "C2'" C14 C 0 1 N N N 38.556 34.463 28.967 -3.475 0.295 0.443 "C2'" 7V5 17
7V5 "C3'" C15 C 0 1 N N N 39.289 33.233 28.410 -4.370 0.753 -0.710 "C3'" 7V5 18
7V5 "N4'" N4 N 1 1 N N N 40.734 33.461 28.179 -5.733 0.982 -0.211 "N4'" 7V5 19
7V5 "C5'A" C16 C 0 0 N N N 41.452 33.512 29.471 -5.724 2.101 0.742 "C5'A" 7V5 20
7V5 "C5'X" C17 C 0 0 N N N 41.264 32.309 27.419 -6.618 1.306 -1.337 "C5'X" 7V5 21
7V5 C1A C18 C 0 1 Y N N 34.181 36.548 30.076 0.407 -2.060 0.282 C1A 7V5 22
7V5 C1 C19 C 0 1 Y N N 34.935 37.747 30.215 -0.527 -3.094 0.445 C1 7V5 23
7V5 C2 C20 C 0 1 Y N N 34.325 38.972 30.542 -0.173 -4.376 0.149 C2 7V5 24
7V5 H4 H1 H 0 1 N N N 31.093 37.957 30.797 3.032 -3.948 -0.822 H4 7V5 25
7V5 H6 H2 H 0 1 N N N 30.120 33.344 30.370 5.069 0.592 -0.873 H6 7V5 26
7V5 H7 H3 H 0 1 N N N 29.536 30.928 30.127 5.901 2.904 -0.830 H7 7V5 27
7V5 H8 H4 H 0 1 N N N 31.240 29.278 29.411 4.430 4.737 -0.104 H8 7V5 28
7V5 H3 H5 H 0 1 N N N 32.479 40.003 30.966 1.371 -5.701 -0.521 H3 7V5 29
7V5 H5 H6 H 0 1 N N N 31.083 35.375 30.418 3.499 -1.611 -0.660 H5 7V5 30
7V5 H9 H7 H 0 1 N N N 33.583 29.999 28.939 2.121 4.279 0.587 H9 7V5 31
7V5 H11 H8 H 0 1 N N N 36.691 35.661 30.307 -1.146 0.321 1.752 H11 7V5 32
7V5 "H1'A" H9 H 0 0 N N N 36.703 33.738 28.140 -1.662 0.982 -0.496 "H1'A" 7V5 33
7V5 "H1'B" H10 H 0 0 N N N 36.944 33.364 29.881 -2.076 -0.713 -0.848 "H1'B" 7V5 34
7V5 "H2'A" H11 H 0 0 N N N 38.967 34.723 29.953 -3.869 -0.631 0.863 "H2'A" 7V5 35
7V5 "H2'B" H12 H 0 0 N N N 38.684 35.313 28.280 -3.455 1.064 1.215 "H2'B" 7V5 36
7V5 "H3'A" H13 H 0 0 N N N 38.823 32.954 27.453 -3.976 1.679 -1.130 "H3'A" 7V5 37
7V5 "H3'B" H14 H 0 0 N N N 39.177 32.407 29.127 -4.390 -0.016 -1.482 "H3'B" 7V5 38
7V5 "H5'A" H16 H 0 0 N N N 41.081 34.361 30.064 -5.363 3.000 0.243 "H5'A" 7V5 39
7V5 "H5'C" H17 H 0 0 N N N 41.280 32.576 30.023 -6.735 2.271 1.112 "H5'C" 7V5 40
7V5 "H5'B" H18 H 0 0 N N N 42.529 33.637 29.287 -5.066 1.860 1.577 "H5'B" 7V5 41
7V5 H5XA H19 H 0 0 N N N 42.339 32.454 27.234 -6.625 0.476 -2.045 H5XA 7V5 42
7V5 H5XC H20 H 0 0 N N N 41.113 31.387 27.999 -7.629 1.476 -0.967 H5XC 7V5 43
7V5 H5XB H21 H 0 0 N N N 40.734 32.229 26.458 -6.258 2.205 -1.837 H5XB 7V5 44
7V5 H1 H22 H 0 1 N N N 36.004 37.716 30.065 -1.523 -2.875 0.800 H1 7V5 45
7V5 H2 H23 H 0 1 N N N 34.932 39.860 30.643 -0.893 -5.170 0.275 H2 7V5 46
7V5 H10 H25 H 0 1 N N N 40.875 34.309 27.669 -6.066 0.150 0.251 H10 7V5 47
7V5 H12 H24 H 0 1 N N N 35.238 32.474 29.022 0.277 2.142 0.896 H12 7V5 48
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
7V5 "C5'X" "N4'" SING N N 1
7V5 "N4'" "C3'" SING N N 2
7V5 "N4'" "C5'A" SING N N 3
7V5 "C3'" "C2'" SING N N 4
7V5 "C2'" "C1'" SING N N 5
7V5 "C1'" N11 SING N N 6
7V5 C9 C9A SING Y N 7
7V5 C9 C8 DOUB Y N 8
7V5 N10 C9A SING Y N 9
7V5 N10 C10A SING Y N 10
7V5 C9A C6A DOUB Y N 11
7V5 N11 C11A SING N N 12
7V5 C8 C7 SING Y N 13
7V5 C10A C11A DOUB Y N 14
7V5 C10A C5A SING Y N 15
7V5 C11A C1A SING Y N 16
7V5 C6A C5A SING Y N 17
7V5 C6A C6 SING Y N 18
7V5 C5A N5 DOUB Y N 19
7V5 C7 C6 DOUB Y N 20
7V5 C1A C1 DOUB Y N 21
7V5 C1A C4A SING Y N 22
7V5 C1 C2 SING Y N 23
7V5 N5 C4A SING Y N 24
7V5 C4A C4 DOUB Y N 25
7V5 C2 C3 DOUB Y N 26
7V5 C4 C3 SING Y N 27
7V5 C4 H4 SING N N 28
7V5 C6 H6 SING N N 29
7V5 C7 H7 SING N N 30
7V5 C8 H8 SING N N 31
7V5 C3 H3 SING N N 32
7V5 N5 H5 SING N N 33
7V5 C9 H9 SING N N 34
7V5 N11 H11 SING N N 35
7V5 "C1'" "H1'A" SING N N 36
7V5 "C1'" "H1'B" SING N N 37
7V5 "C2'" "H2'A" SING N N 38
7V5 "C2'" "H2'B" SING N N 39
7V5 "C3'" "H3'A" SING N N 40
7V5 "C3'" "H3'B" SING N N 41
7V5 "C5'A" "H5'A" SING N N 42
7V5 "C5'A" "H5'C" SING N N 43
7V5 "C5'A" "H5'B" SING N N 44
7V5 "C5'X" H5XA SING N N 45
7V5 "C5'X" H5XC SING N N 46
7V5 "C5'X" H5XB SING N N 47
7V5 C1 H1 SING N N 48
7V5 C2 H2 SING N N 49
7V5 H10 "N4'" SING N N 50
7V5 H12 N10 SING N N 51
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
7V5 InChI InChI 1.03 "InChI=1S/C20H22N4/c1-24(2)13-7-12-21-18-14-8-3-5-10-16(14)22-19-15-9-4-6-11-17(15)23-20(18)19/h3-6,8-11,23H,7,12-13H2,1-2H3,(H,21,22)/p+2"
7V5 InChIKey InChI 1.03 CTDCVGDSVHUYMA-UHFFFAOYSA-P
7V5 SMILES_CANONICAL CACTVS 3.385 "C[NH+](C)CCCNc1c2[nH]c3ccccc3c2[nH+]c4ccccc14"
7V5 SMILES CACTVS 3.385 "C[NH+](C)CCCNc1c2[nH]c3ccccc3c2[nH+]c4ccccc14"
7V5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[NH+](C)CCCNc1c2ccccc2[nH+]c3c1[nH]c4c3cccc4"
7V5 SMILES "OpenEye OEToolkits" 2.0.7 "C[NH+](C)CCCNc1c2ccccc2[nH+]c3c1[nH]c4c3cccc4"
#
_pdbx_chem_comp_identifier.comp_id 7V5
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "3-(10~{H}-indolo[3,2-b]quinolin-5-ium-11-ylamino)propyl-dimethyl-azanium"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
7V5 "Create component" 2021-09-07 PDBE
7V5 "Initial release" 2021-12-29 RCSB
##