data_7VA # _chem_comp.id 7VA _chem_comp.name "(5S)-5-({4-[(6-methoxy-1-methyl-1H-benzimidazol-2-yl)methoxy]phenyl}methyl)-1,3-thiazolidine-2,4-dione" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H19 N3 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-12-07 _chem_comp.pdbx_modified_date 2017-08-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 397.448 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 7VA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5U5L _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7VA C10 C1 C 0 1 Y N N -6.135 28.631 130.227 2.699 -0.217 -1.369 C10 7VA 1 7VA C13 C2 C 0 1 Y N N -8.820 29.246 129.932 1.066 -1.492 0.468 C13 7VA 2 7VA C17 C3 C 0 1 Y N N -7.850 30.609 125.852 -3.067 -0.782 0.279 C17 7VA 3 7VA C20 C4 C 0 1 Y N N -8.604 32.589 125.347 -5.123 -0.851 -0.424 C20 7VA 4 7VA C22 C5 C 0 1 Y N N -6.825 33.491 123.979 -6.126 1.036 0.706 C22 7VA 5 7VA C24 C6 C 0 1 Y N N -8.789 34.834 124.416 -7.437 -0.345 -0.767 C24 7VA 6 7VA C26 C7 C 0 1 N N N -5.670 30.602 124.685 -3.106 1.225 1.806 C26 7VA 7 7VA C28 C8 C 0 1 N N N -6.949 36.949 123.707 -9.638 1.154 -0.313 C28 7VA 8 7VA N01 N1 N 0 1 N N N -5.334 31.875 134.698 7.637 0.462 0.253 N01 7VA 9 7VA C02 C9 C 0 1 N N N -6.028 30.651 134.587 6.866 -0.520 0.689 C02 7VA 10 7VA C03 C10 C 0 1 N N S -5.769 30.052 133.279 5.385 -0.248 0.535 C03 7VA 11 7VA S04 S1 S 0 1 N N N -4.735 31.108 132.483 5.350 1.410 -0.227 S04 7VA 12 7VA C05 C11 C 0 1 N N N -4.612 32.235 133.652 7.115 1.576 -0.263 C05 7VA 13 7VA O06 O1 O 0 1 N N N -3.971 33.227 133.577 7.737 2.531 -0.687 O06 7VA 14 7VA O07 O2 O 0 1 N N N -6.717 30.184 135.429 7.304 -1.544 1.167 O07 7VA 15 7VA C08 C12 C 0 1 N N N -6.319 28.723 132.755 4.738 -1.284 -0.386 C08 7VA 16 7VA C09 C13 C 0 1 Y N N -6.922 28.843 131.351 3.247 -1.062 -0.422 C09 7VA 17 7VA C11 C14 C 0 1 Y N N -6.690 28.732 128.957 1.334 -0.007 -1.401 C11 7VA 18 7VA C12 C15 C 0 1 Y N N -8.036 29.041 128.808 0.513 -0.645 -0.482 C12 7VA 19 7VA C14 C16 C 0 1 Y N N -8.266 29.145 131.199 2.431 -1.702 0.492 C14 7VA 20 7VA O15 O3 O 0 1 N N N -8.625 29.146 127.536 -0.830 -0.440 -0.512 O15 7VA 21 7VA C16 C17 C 0 1 N N N -7.745 29.204 126.447 -1.613 -1.129 0.465 C16 7VA 22 7VA N18 N2 N 0 1 Y N N -6.933 31.191 125.093 -3.703 0.262 0.878 N18 7VA 23 7VA C19 C18 C 0 1 Y N N -7.375 32.437 124.758 -5.016 0.244 0.450 C19 7VA 24 7VA N21 N3 N 0 1 Y N N -8.873 31.434 126.021 -3.897 -1.433 -0.483 N21 7VA 25 7VA C23 C19 C 0 1 Y N N -7.535 34.678 123.815 -7.333 0.740 0.098 C23 7VA 26 7VA C25 C20 C 0 1 Y N N -9.329 33.802 125.180 -6.352 -1.133 -1.028 C25 7VA 27 7VA O27 O4 O 0 1 N N N -6.989 35.715 123.046 -8.423 1.514 0.347 O27 7VA 28 7VA H1 H1 H 0 1 N N N -5.089 28.387 130.340 3.338 0.282 -2.082 H1 7VA 29 7VA H2 H2 H 0 1 N N N -9.867 29.486 129.821 0.430 -1.992 1.182 H2 7VA 30 7VA H3 H3 H 0 1 N N N -5.857 33.372 123.515 -6.048 1.878 1.378 H3 7VA 31 7VA H4 H4 H 0 1 N N N -9.338 35.755 124.287 -8.384 -0.567 -1.236 H4 7VA 32 7VA H5 H5 H 0 1 N N N -5.585 29.589 125.105 -2.707 2.071 1.245 H5 7VA 33 7VA H6 H6 H 0 1 N N N -5.628 30.549 123.587 -3.866 1.578 2.503 H6 7VA 34 7VA H7 H7 H 0 1 N N N -4.840 31.223 125.054 -2.300 0.744 2.360 H7 7VA 35 7VA H8 H8 H 0 1 N N N -6.510 37.708 123.042 -9.491 1.194 -1.392 H8 7VA 36 7VA H9 H9 H 0 1 N N N -7.970 37.250 123.983 -9.924 0.143 -0.022 H9 7VA 37 7VA H10 H10 H 0 1 N N N -6.335 36.858 124.615 -10.426 1.850 -0.028 H10 7VA 38 7VA H11 H11 H 0 1 N N N -5.386 32.438 135.523 8.601 0.372 0.314 H11 7VA 39 7VA H12 H12 H 0 1 N N N -7.100 28.370 133.444 5.145 -1.182 -1.391 H12 7VA 40 7VA H13 H13 H 0 1 N N N -5.499 27.991 132.724 4.946 -2.285 -0.009 H13 7VA 41 7VA H14 H14 H 0 1 N N N -6.074 28.570 128.085 0.906 0.653 -2.141 H14 7VA 42 7VA H15 H15 H 0 1 N N N -8.884 29.302 132.071 2.862 -2.361 1.231 H15 7VA 43 7VA H16 H16 H 0 1 N N N -8.028 28.454 125.694 -1.293 -0.831 1.464 H16 7VA 44 7VA H17 H17 H 0 1 N N N -6.715 29.014 126.784 -1.477 -2.204 0.347 H17 7VA 45 7VA H18 H18 H 0 1 N N N -10.296 33.922 125.645 -6.443 -1.972 -1.701 H18 7VA 46 7VA H19 H19 H 0 1 N N N -6.638 30.581 132.860 4.892 -0.236 1.507 H19 7VA 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7VA O27 C28 SING N N 1 7VA O27 C23 SING N N 2 7VA C23 C22 DOUB Y N 3 7VA C23 C24 SING Y N 4 7VA C22 C19 SING Y N 5 7VA C24 C25 DOUB Y N 6 7VA C26 N18 SING N N 7 7VA C19 N18 SING Y N 8 7VA C19 C20 DOUB Y N 9 7VA N18 C17 SING Y N 10 7VA C25 C20 SING Y N 11 7VA C20 N21 SING Y N 12 7VA C17 N21 DOUB Y N 13 7VA C17 C16 SING N N 14 7VA C16 O15 SING N N 15 7VA O15 C12 SING N N 16 7VA C12 C11 DOUB Y N 17 7VA C12 C13 SING Y N 18 7VA C11 C10 SING Y N 19 7VA C13 C14 DOUB Y N 20 7VA C10 C09 DOUB Y N 21 7VA C14 C09 SING Y N 22 7VA C09 C08 SING N N 23 7VA S04 C03 SING N N 24 7VA S04 C05 SING N N 25 7VA C08 C03 SING N N 26 7VA C03 C02 SING N N 27 7VA O06 C05 DOUB N N 28 7VA C05 N01 SING N N 29 7VA C02 N01 SING N N 30 7VA C02 O07 DOUB N N 31 7VA C10 H1 SING N N 32 7VA C13 H2 SING N N 33 7VA C22 H3 SING N N 34 7VA C24 H4 SING N N 35 7VA C26 H5 SING N N 36 7VA C26 H6 SING N N 37 7VA C26 H7 SING N N 38 7VA C28 H8 SING N N 39 7VA C28 H9 SING N N 40 7VA C28 H10 SING N N 41 7VA N01 H11 SING N N 42 7VA C08 H12 SING N N 43 7VA C08 H13 SING N N 44 7VA C11 H14 SING N N 45 7VA C14 H15 SING N N 46 7VA C16 H16 SING N N 47 7VA C16 H17 SING N N 48 7VA C25 H18 SING N N 49 7VA C03 H19 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7VA SMILES ACDLabs 12.01 "c2c(CC1C(NC(S1)=O)=O)ccc(c2)OCc4nc3c(cc(cc3)OC)n4C" 7VA InChI InChI 1.03 "InChI=1S/C20H19N3O4S/c1-23-16-10-14(26-2)7-8-15(16)21-18(23)11-27-13-5-3-12(4-6-13)9-17-19(24)22-20(25)28-17/h3-8,10,17H,9,11H2,1-2H3,(H,22,24,25)" 7VA InChIKey InChI 1.03 XMSXOLDPMGMWTH-UHFFFAOYSA-N 7VA SMILES_CANONICAL CACTVS 3.385 "COc1ccc2nc(COc3ccc(C[C@@H]4SC(=O)NC4=O)cc3)n(C)c2c1" 7VA SMILES CACTVS 3.385 "COc1ccc2nc(COc3ccc(C[CH]4SC(=O)NC4=O)cc3)n(C)c2c1" 7VA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cn1c2cc(ccc2nc1COc3ccc(cc3)CC4C(=O)NC(=O)S4)OC" 7VA SMILES "OpenEye OEToolkits" 2.0.6 "Cn1c2cc(ccc2nc1COc3ccc(cc3)CC4C(=O)NC(=O)S4)OC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 7VA "SYSTEMATIC NAME" ACDLabs 12.01 "(5S)-5-({4-[(6-methoxy-1-methyl-1H-benzimidazol-2-yl)methoxy]phenyl}methyl)-1,3-thiazolidine-2,4-dione" 7VA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "5-[[4-[(6-methoxy-1-methyl-benzimidazol-2-yl)methoxy]phenyl]methyl]-1,3-thiazolidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7VA "Create component" 2016-12-07 RCSB 7VA "Initial release" 2017-08-23 RCSB #