data_7VB # _chem_comp.id 7VB _chem_comp.name "N-[(benzyloxy)carbonyl]-L-valyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-4-methylidene-L-norvalinamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H38 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-08-23 _chem_comp.pdbx_modified_date 2022-07-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 502.603 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 7VB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7RVN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7VB C1 C1 C 0 1 Y N N 6.119 -13.090 20.878 9.672 1.110 -2.023 C1 7VB 1 7VB C11 C2 C 0 1 N N S 9.512 -7.410 18.992 1.826 -0.227 1.215 C11 7VB 2 7VB C12 C3 C 0 1 N N N 9.700 -6.131 18.231 0.637 -0.422 0.310 C12 7VB 3 7VB C14 C4 C 0 1 N N S 9.235 -3.802 18.023 -1.716 -0.945 -0.048 C14 7VB 4 7VB C15 C5 C 0 1 N N N 10.648 -3.275 18.117 -2.984 -0.700 0.729 C15 7VB 5 7VB C17 C6 C 0 1 N N S 12.616 -2.374 16.969 -5.413 -0.579 0.875 C17 7VB 6 7VB C19 C7 C 0 1 N N N 13.490 -3.174 16.001 -6.517 -0.123 -0.082 C19 7VB 7 7VB C2 C8 C 0 1 Y N N 6.280 -13.433 19.539 9.209 1.989 -1.062 C2 7VB 8 7VB C20 C9 C 0 1 N N S 13.610 -4.618 16.479 -6.144 1.234 -0.682 C20 7VB 9 7VB C21 C10 C 0 1 N N N 14.472 -4.740 17.726 -6.101 2.319 0.418 C21 7VB 10 7VB C22 C11 C 0 1 N N N 15.287 -6.015 17.522 -6.659 3.549 -0.331 C22 7VB 11 7VB C24 C12 C 0 1 N N N 14.343 -5.473 15.481 -7.223 1.708 -1.630 C24 7VB 12 7VB C3 C13 C 0 1 Y N N 6.107 -12.483 18.530 8.220 1.592 -0.182 C3 7VB 13 7VB C30 C14 C 0 1 N N N 10.853 -8.080 19.305 1.531 0.897 2.210 C30 7VB 14 7VB C31 C15 C 0 1 N N N 10.693 -9.243 20.283 2.738 1.094 3.128 C31 7VB 15 7VB C32 C16 C 0 1 N N N 11.854 -7.066 19.848 1.253 2.193 1.447 C32 7VB 16 7VB C34 C17 C 0 1 N N N 8.199 -2.828 18.613 -1.717 -2.377 -0.587 C34 7VB 17 7VB C35 C18 C 0 1 N N N 6.808 -3.051 18.027 -0.510 -2.584 -1.465 C35 7VB 18 7VB C36 C19 C 0 1 N N N 6.213 -4.412 17.821 -0.559 -2.190 -2.919 C36 7VB 19 7VB C37 C20 C 0 1 N N N 6.069 -2.020 17.671 0.582 -3.106 -0.965 C37 7VB 20 7VB C4 C21 C 0 1 Y N N 5.769 -11.180 18.890 7.694 0.316 -0.263 C4 7VB 21 7VB C5 C22 C 0 1 Y N N 5.600 -10.842 20.235 8.157 -0.563 -1.224 C5 7VB 22 7VB C6 C23 C 0 1 Y N N 5.779 -11.790 21.232 9.147 -0.166 -2.104 C6 7VB 23 7VB C7 C24 C 0 1 N N N 5.558 -10.125 17.827 6.617 -0.117 0.698 C7 7VB 24 7VB C8 C25 C 0 1 N N N 12.624 -0.899 16.573 -5.843 -1.872 1.571 C8 7VB 25 7VB C9 C26 C 0 1 N N N 7.446 -8.603 18.490 4.237 -0.133 0.874 C9 7VB 26 7VB N10 N1 N 0 1 N N N 8.695 -8.287 18.183 2.998 0.127 0.411 N10 7VB 27 7VB N13 N2 N 0 1 N N N 9.152 -5.046 18.758 -0.560 -0.756 0.832 N13 7VB 28 7VB N16 N3 N 0 1 N N N 11.251 -2.898 16.985 -4.181 -0.817 0.120 N16 7VB 29 7VB N23 N4 N 0 1 N N N 15.246 -6.249 16.087 -7.495 3.006 -1.408 N23 7VB 30 7VB O26 O1 O 0 1 N N N 14.115 -5.449 14.289 -7.764 1.019 -2.468 O26 7VB 31 7VB O29 O2 O 0 1 N N N 6.879 -8.235 19.518 4.381 -0.662 1.959 O29 7VB 32 7VB O33 O3 O 0 1 N N N 10.298 -6.090 17.168 0.757 -0.279 -0.889 O33 7VB 33 7VB O38 O4 O 0 1 N N N 11.207 -3.232 19.208 -2.928 -0.397 1.902 O38 7VB 34 7VB O8 O5 O 0 1 N N N 6.766 -9.438 17.513 5.314 0.192 0.136 O8 7VB 35 7VB O9 O6 O 0 1 N N N 13.938 -0.328 16.706 -6.185 -2.851 0.588 O9 7VB 36 7VB H1 H1 H 0 1 N N N 6.259 -13.837 21.645 10.442 1.421 -2.714 H1 7VB 37 7VB H2 H2 H 0 1 N N N 8.998 -7.192 19.940 2.024 -1.151 1.758 H2 7VB 38 7VB H3 H3 H 0 1 N N N 8.989 -3.977 16.965 -1.658 -0.243 -0.880 H3 7VB 39 7VB H4 H4 H 0 1 N N N 13.048 -2.463 17.977 -5.238 0.195 1.622 H4 7VB 40 7VB H5 H5 H 0 1 N N N 14.491 -2.721 15.955 -6.631 -0.855 -0.881 H5 7VB 41 7VB H6 H6 H 0 1 N N N 13.034 -3.158 15.000 -7.456 -0.033 0.464 H6 7VB 42 7VB H7 H7 H 0 1 N N N 6.542 -14.447 19.277 9.619 2.986 -1.000 H7 7VB 43 7VB H8 H8 H 0 1 N N N 12.610 -5.033 16.672 -5.184 1.172 -1.194 H8 7VB 44 7VB H9 H9 H 0 1 N N N 15.136 -3.868 17.823 -6.742 2.050 1.257 H9 7VB 45 7VB H10 H10 H 0 1 N N N 13.842 -4.823 18.624 -5.078 2.496 0.752 H10 7VB 46 7VB H11 H11 H 0 1 N N N 14.834 -6.857 18.066 -7.260 4.160 0.342 H11 7VB 47 7VB H12 H12 H 0 1 N N N 16.323 -5.873 17.863 -5.843 4.140 -0.747 H12 7VB 48 7VB H13 H13 H 0 1 N N N 6.233 -12.753 17.492 7.858 2.278 0.569 H13 7VB 49 7VB H14 H14 H 0 1 N N N 11.256 -8.483 18.364 0.658 0.633 2.808 H14 7VB 50 7VB H15 H15 H 0 1 N N N 11.676 -9.695 20.480 2.528 1.895 3.837 H15 7VB 51 7VB H16 H16 H 0 1 N N N 10.264 -8.873 21.226 2.936 0.171 3.672 H16 7VB 52 7VB H17 H17 H 0 1 N N N 10.023 -9.999 19.847 3.610 1.358 2.531 H17 7VB 53 7VB H18 H18 H 0 1 N N N 12.807 -7.571 20.065 0.393 2.053 0.792 H18 7VB 54 7VB H19 H19 H 0 1 N N N 12.019 -6.277 19.100 1.043 2.994 2.155 H19 7VB 55 7VB H20 H20 H 0 1 N N N 11.458 -6.618 20.772 2.125 2.457 0.849 H20 7VB 56 7VB H21 H21 H 0 1 N N N 8.153 -2.975 19.702 -1.686 -3.079 0.246 H21 7VB 57 7VB H22 H22 H 0 1 N N N 8.516 -1.797 18.395 -2.623 -2.545 -1.170 H22 7VB 58 7VB H23 H23 H 0 1 N N N 6.926 -5.179 18.156 -0.233 -1.155 -3.026 H23 7VB 59 7VB H24 H24 H 0 1 N N N 5.283 -4.497 18.402 0.100 -2.840 -3.494 H24 7VB 60 7VB H25 H25 H 0 1 N N N 5.993 -4.558 16.753 -1.580 -2.289 -3.288 H25 7VB 61 7VB H26 H26 H 0 1 N N N 6.448 -1.016 17.794 1.447 -3.254 -1.594 H26 7VB 62 7VB H27 H27 H 0 1 N N N 5.085 -2.179 17.256 0.617 -3.388 0.077 H27 7VB 63 7VB H28 H28 H 0 1 N N N 5.327 -9.832 20.502 7.747 -1.560 -1.287 H28 7VB 64 7VB H29 H29 H 0 1 N N N 5.656 -11.521 22.271 9.506 -0.852 -2.857 H29 7VB 65 7VB H30 H30 H 0 1 N N N 4.819 -9.396 18.191 6.693 -1.191 0.869 H30 7VB 66 7VB H31 H31 H 0 1 N N N 5.177 -10.609 16.916 6.739 0.411 1.644 H31 7VB 67 7VB H32 H32 H 0 1 N N N 11.927 -0.350 17.223 -5.023 -2.244 2.184 H32 7VB 68 7VB H33 H33 H 0 1 N Y N 12.298 -0.807 15.526 -6.709 -1.674 2.203 H33 7VB 69 7VB H34 H34 H 0 1 N N N 9.093 -8.674 17.351 2.883 0.549 -0.455 H34 7VB 70 7VB H35 H35 H 0 1 N N N 8.691 -5.086 19.644 -0.656 -0.870 1.790 H35 7VB 71 7VB H36 H36 H 0 1 N N N 10.753 -2.977 16.122 -4.226 -1.059 -0.818 H36 7VB 72 7VB H37 H37 H 0 1 N N N 15.824 -6.911 15.611 -8.159 3.517 -1.896 H37 7VB 73 7VB H38 H38 H 0 1 N N N 13.913 0.588 16.454 -6.468 -3.698 0.958 H38 7VB 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7VB O26 C24 DOUB N N 1 7VB C24 N23 SING N N 2 7VB C24 C20 SING N N 3 7VB C19 C20 SING N N 4 7VB C19 C17 SING N N 5 7VB N23 C22 SING N N 6 7VB C20 C21 SING N N 7 7VB C8 O9 SING N N 8 7VB C8 C17 SING N N 9 7VB C17 N16 SING N N 10 7VB N16 C15 SING N N 11 7VB O33 C12 DOUB N N 12 7VB O8 C7 SING N N 13 7VB O8 C9 SING N N 14 7VB C22 C21 SING N N 15 7VB C37 C35 DOUB N N 16 7VB C36 C35 SING N N 17 7VB C7 C4 SING N N 18 7VB C14 C15 SING N N 19 7VB C14 C34 SING N N 20 7VB C14 N13 SING N N 21 7VB C35 C34 SING N N 22 7VB C15 O38 DOUB N N 23 7VB N10 C9 SING N N 24 7VB N10 C11 SING N N 25 7VB C12 N13 SING N N 26 7VB C12 C11 SING N N 27 7VB C9 O29 DOUB N N 28 7VB C3 C4 DOUB Y N 29 7VB C3 C2 SING Y N 30 7VB C4 C5 SING Y N 31 7VB C11 C30 SING N N 32 7VB C30 C32 SING N N 33 7VB C30 C31 SING N N 34 7VB C2 C1 DOUB Y N 35 7VB C5 C6 DOUB Y N 36 7VB C1 C6 SING Y N 37 7VB C1 H1 SING N N 38 7VB C11 H2 SING N N 39 7VB C14 H3 SING N N 40 7VB C17 H4 SING N N 41 7VB C19 H5 SING N N 42 7VB C19 H6 SING N N 43 7VB C2 H7 SING N N 44 7VB C20 H8 SING N N 45 7VB C21 H9 SING N N 46 7VB C21 H10 SING N N 47 7VB C22 H11 SING N N 48 7VB C22 H12 SING N N 49 7VB C3 H13 SING N N 50 7VB C30 H14 SING N N 51 7VB C31 H15 SING N N 52 7VB C31 H16 SING N N 53 7VB C31 H17 SING N N 54 7VB C32 H18 SING N N 55 7VB C32 H19 SING N N 56 7VB C32 H20 SING N N 57 7VB C34 H21 SING N N 58 7VB C34 H22 SING N N 59 7VB C36 H23 SING N N 60 7VB C36 H24 SING N N 61 7VB C36 H25 SING N N 62 7VB C37 H26 SING N N 63 7VB C37 H27 SING N N 64 7VB C5 H28 SING N N 65 7VB C6 H29 SING N N 66 7VB C7 H30 SING N N 67 7VB C7 H31 SING N N 68 7VB C8 H32 SING N N 69 7VB C8 H33 SING N N 70 7VB N10 H34 SING N N 71 7VB N13 H35 SING N N 72 7VB N16 H36 SING N N 73 7VB N23 H37 SING N N 74 7VB O9 H38 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7VB SMILES ACDLabs 12.01 "CC(C)C(NC(=O)OCc1ccccc1)C(=O)NC(CC(=C)C)C(=O)NC(CC1CCNC1=O)CO" 7VB InChI InChI 1.03 "InChI=1S/C26H38N4O6/c1-16(2)12-21(24(33)28-20(14-31)13-19-10-11-27-23(19)32)29-25(34)22(17(3)4)30-26(35)36-15-18-8-6-5-7-9-18/h5-9,17,19-22,31H,1,10-15H2,2-4H3,(H,27,32)(H,28,33)(H,29,34)(H,30,35)/t19-,20-,21-,22-/m0/s1" 7VB InChIKey InChI 1.03 BYTYQUJNXNJHDG-CMOCDZPBSA-N 7VB SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](NC(=O)OCc1ccccc1)C(=O)N[C@@H](CC(C)=C)C(=O)N[C@H](CO)C[C@@H]2CCNC2=O" 7VB SMILES CACTVS 3.385 "CC(C)[CH](NC(=O)OCc1ccccc1)C(=O)N[CH](CC(C)=C)C(=O)N[CH](CO)C[CH]2CCNC2=O" 7VB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](C(=O)N[C@@H](CC(=C)C)C(=O)N[C@@H](C[C@@H]1CCNC1=O)CO)NC(=O)OCc2ccccc2" 7VB SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(=O)NC(CC(=C)C)C(=O)NC(CC1CCNC1=O)CO)NC(=O)OCc2ccccc2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 7VB "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(benzyloxy)carbonyl]-L-valyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-4-methylidene-L-norvalinamide" 7VB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[(2~{S})-3-methyl-1-[[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pent-4-en-2-yl]amino]-1-oxidanylidene-butan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7VB "Create component" 2021-08-23 RCSB 7VB "Initial release" 2022-07-20 RCSB #