data_7Y2 # _chem_comp.id 7Y2 _chem_comp.name "N-[(benzyloxy)carbonyl]-2-methyl-L-alanyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-4-methyl-L-leucinamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H40 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-08-23 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 504.619 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 7Y2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7RVV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7Y2 C1 C1 C 0 1 Y N N N N N -30.610 18.032 -7.099 6.892 4.309 1.258 C1 7Y2 1 7Y2 C10 C2 C 0 1 N N N N N N -24.686 12.597 -3.810 2.824 -2.763 -2.668 C10 7Y2 2 7Y2 C11 C3 C 0 1 N N N N N N -24.778 13.947 -3.118 2.229 -2.441 -1.295 C11 7Y2 3 7Y2 C12 C4 C 0 1 N N N N N N -23.370 14.348 -2.737 0.727 -2.388 -1.398 C12 7Y2 4 7Y2 C14 C5 C 0 1 N N S N N N -21.912 15.175 -0.962 -1.433 -1.519 -0.679 C14 7Y2 5 7Y2 C15 C6 C 0 1 N N N N N N -21.365 13.953 -0.291 -1.943 -0.450 0.253 C15 7Y2 6 7Y2 C17 C7 C 0 1 N N S N N N -19.616 12.210 -0.471 -3.751 0.890 1.186 C17 7Y2 7 7Y2 C19 C8 C 0 1 N N N N N N -18.895 11.499 -1.629 -5.040 1.489 0.619 C19 7Y2 8 7Y2 C2 C9 C 0 1 Y N N N N N -29.542 18.481 -7.878 6.650 3.304 2.176 C2 7Y2 9 7Y2 C20 C10 C 0 1 N N S N N N -19.891 11.194 -2.766 -4.737 2.194 -0.704 C20 7Y2 10 7Y2 C21 C11 C 0 1 N N N N N N -20.716 9.939 -2.451 -3.824 3.420 -0.467 C21 7Y2 11 7Y2 C22 C12 C 0 1 N N N N N N -20.884 9.235 -3.789 -4.374 4.428 -1.500 C22 7Y2 12 7Y2 C23 C13 C 0 1 N N N N N N -21.959 17.878 -1.932 -2.542 -2.168 2.013 C23 7Y2 13 7Y2 C24 C14 C 0 1 N N N N N N -19.333 10.919 -4.144 -6.000 2.782 -1.293 C24 7Y2 14 7Y2 C27 C15 C 0 1 N N N N N N -18.622 12.838 0.506 -4.034 0.277 2.558 C27 7Y2 15 7Y2 C3 C16 C 0 1 Y N N N N N -28.219 18.251 -7.490 6.347 2.028 1.740 C3 7Y2 16 7Y2 C30 C17 C 0 1 N N N N N N -25.653 13.843 -1.864 2.634 -3.528 -0.297 C30 7Y2 17 7Y2 C34 C18 C 0 1 N N N N N N -22.009 16.344 0.042 -2.116 -2.848 -0.353 C34 7Y2 18 7Y2 C35 C19 C 0 1 N N N N N N -22.494 17.687 -0.535 -1.865 -3.204 1.114 C35 7Y2 19 7Y2 C36 C20 C 0 1 N N N N N N -24.008 17.797 -0.563 -0.359 -3.210 1.387 C36 7Y2 20 7Y2 C37 C21 C 0 1 N N N N N N -21.960 18.868 0.250 -2.442 -4.590 1.408 C37 7Y2 21 7Y2 C4 C22 C 0 1 Y N N N N N -27.959 17.570 -6.310 6.287 1.757 0.386 C4 7Y2 22 7Y2 C5 C23 C 0 1 Y N N N N N -29.022 17.115 -5.535 6.530 2.762 -0.532 C5 7Y2 23 7Y2 C6 C24 C 0 1 Y N N N N N -30.343 17.345 -5.919 6.833 4.038 -0.096 C6 7Y2 24 7Y2 C7 C25 C 0 1 N N N N N N -26.534 17.317 -5.886 5.958 0.365 -0.090 C7 7Y2 25 7Y2 C9 C26 C 0 1 N N N N N N -25.344 16.207 -3.973 4.057 -0.957 -0.669 C9 7Y2 26 7Y2 N10 N1 N 0 1 N N N N N N -25.419 14.871 -4.037 2.733 -1.145 -0.836 N10 7Y2 27 7Y2 N13 N2 N 0 1 N N N N N N -23.203 14.843 -1.523 0.016 -1.661 -0.514 N13 7Y2 28 7Y2 N16 N3 N 0 1 N N N N N N -20.507 13.232 -1.009 -3.256 -0.149 0.279 N16 7Y2 29 7Y2 N23 N4 N 0 1 N N N N N N -20.115 10.029 -4.736 -5.770 4.034 -1.726 N23 7Y2 30 7Y2 O26 O1 O 0 1 N N N N N N -18.315 11.406 -4.625 -7.065 2.207 -1.366 O26 7Y2 31 7Y2 O28 O2 O 0 1 N N N N N N -18.217 11.936 1.554 -5.101 -0.668 2.447 O28 7Y2 32 7Y2 O29 O3 O 0 1 N N N N N N -24.382 16.822 -3.535 4.833 -1.863 -0.900 O29 7Y2 33 7Y2 O33 O4 O 0 1 N N N N N N -22.451 14.238 -3.509 0.157 -3.001 -2.276 O33 7Y2 34 7Y2 O38 O5 O 0 1 N N N N N N -21.726 13.674 0.838 -1.171 0.138 0.980 O38 7Y2 35 7Y2 O8 O6 O 0 1 N N N N N N -26.468 16.979 -4.499 4.521 0.235 -0.247 O8 7Y2 36 7Y2 H1 H1 H 0 1 N N N N N N -31.629 18.215 -7.408 7.124 5.307 1.599 H1 7Y2 37 7Y2 H2 H2 H 0 1 N N N N N N -24.203 11.872 -3.138 2.535 -1.988 -3.379 H2 7Y2 38 7Y2 H3 H3 H 0 1 N N N N N N -25.697 12.245 -4.063 3.910 -2.801 -2.593 H3 7Y2 39 7Y2 H4 H4 H 0 1 N N N N N N -24.091 12.696 -4.730 2.449 -3.727 -3.009 H4 7Y2 40 7Y2 H5 H5 H 0 1 N N N N N N -21.227 15.472 -1.770 -1.656 -1.239 -1.709 H5 7Y2 41 7Y2 H6 H6 H 0 1 N N N N N N -20.210 11.462 0.074 -3.000 1.674 1.285 H6 7Y2 42 7Y2 H7 H7 H 0 1 N N N N N N -18.461 10.557 -1.263 -5.766 0.694 0.449 H7 7Y2 43 7Y2 H8 H8 H 0 1 N N N N N N -18.094 12.148 -2.012 -5.450 2.208 1.329 H8 7Y2 44 7Y2 H9 H9 H 0 1 N N N N N N -29.741 19.015 -8.795 6.697 3.516 3.234 H9 7Y2 45 7Y2 H10 H10 H 0 1 N N N N N N -20.585 12.044 -2.841 -4.272 1.503 -1.406 H10 7Y2 46 7Y2 H11 H11 H 0 1 N N N N N N -21.695 10.215 -2.033 -3.937 3.800 0.548 H11 7Y2 47 7Y2 H12 H12 H 0 1 N N N N N N -20.182 9.293 -1.738 -2.782 3.176 -0.676 H12 7Y2 48 7Y2 H13 H13 H 0 1 N N N N N N -21.944 9.207 -4.080 -4.328 5.441 -1.100 H13 7Y2 49 7Y2 H14 H14 H 0 1 N N N N N N -20.491 8.209 -3.737 -3.808 4.363 -2.429 H14 7Y2 50 7Y2 H15 H15 H 0 1 N N N N N N -20.862 17.799 -1.919 -3.531 -1.936 1.618 H15 7Y2 51 7Y2 H16 H16 H 0 1 N N N N N N -22.374 17.103 -2.593 -2.638 -2.570 3.022 H16 7Y2 52 7Y2 H17 H17 H 0 1 N N N N N N -22.251 18.871 -2.304 -1.939 -1.261 2.040 H17 7Y2 53 7Y2 H18 H18 H 0 1 N N N N N N -17.728 13.148 -0.055 -3.139 -0.227 2.922 H18 7Y2 54 7Y2 H19 H19 H 0 1 N Y N N N N -19.092 13.721 0.965 -4.318 1.064 3.257 H19 7Y2 55 7Y2 H20 H20 H 0 1 N N N N N N -27.404 18.602 -8.106 6.158 1.243 2.457 H20 7Y2 56 7Y2 H21 H21 H 0 1 N N N N N N -25.189 13.147 -1.149 3.721 -3.567 -0.222 H21 7Y2 57 7Y2 H22 H22 H 0 1 N N N N N N -25.748 14.836 -1.400 2.210 -3.299 0.681 H22 7Y2 58 7Y2 H23 H23 H 0 1 N N N N N N -26.650 13.471 -2.143 2.259 -4.493 -0.639 H23 7Y2 59 7Y2 H24 H24 H 0 1 N N N N N N -22.707 16.047 0.838 -3.188 -2.758 -0.527 H24 7Y2 60 7Y2 H25 H25 H 0 1 N N N N N N -21.009 16.503 0.472 -1.709 -3.632 -0.992 H25 7Y2 61 7Y2 H26 H26 H 0 1 N N N N N N -24.405 17.659 0.453 -0.157 -3.780 2.294 H26 7Y2 62 7Y2 H27 H27 H 0 1 N N N N N N -24.296 18.790 -0.937 0.160 -3.670 0.546 H27 7Y2 63 7Y2 H28 H28 H 0 1 N N N N N N -24.420 17.022 -1.226 -0.009 -2.186 1.515 H28 7Y2 64 7Y2 H29 H29 H 0 1 N N N N N N -22.308 18.804 1.292 -3.515 -4.586 1.214 H29 7Y2 65 7Y2 H30 H30 H 0 1 N N N N N N -20.860 18.855 0.229 -1.960 -5.328 0.767 H30 7Y2 66 7Y2 H31 H31 H 0 1 N N N N N N -22.324 19.803 -0.201 -2.263 -4.844 2.453 H31 7Y2 67 7Y2 H32 H32 H 0 1 N N N N N N -28.821 16.575 -4.622 6.483 2.550 -1.590 H32 7Y2 68 7Y2 H33 H33 H 0 1 N N N N N N -31.156 16.991 -5.302 7.018 4.824 -0.813 H33 7Y2 69 7Y2 H34 H34 H 0 1 N N N N N N -26.124 16.487 -6.479 6.446 0.184 -1.048 H34 7Y2 70 7Y2 H35 H35 H 0 1 N N N N N N -25.938 18.224 -6.064 6.311 -0.362 0.641 H35 7Y2 71 7Y2 H36 H36 H 0 1 N N N N N N -25.961 14.477 -4.779 2.114 -0.421 -0.652 H36 7Y2 72 7Y2 H37 H37 H 0 1 N N N N N N -24.015 14.997 -0.960 0.463 -1.230 0.231 H37 7Y2 73 7Y2 H38 H38 H 0 1 N N N N N N -20.470 13.404 -1.993 -3.873 -0.619 -0.303 H38 7Y2 74 7Y2 H39 H39 H 0 1 N N N N N N -20.171 9.915 -5.728 -6.440 4.603 -2.134 H39 7Y2 75 7Y2 H40 H40 H 0 1 N N N N N N -17.602 12.375 2.130 -5.334 -1.097 3.282 H40 7Y2 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7Y2 C2 C3 DOUB Y N 1 7Y2 C2 C1 SING Y N 2 7Y2 C3 C4 SING Y N 3 7Y2 C1 C6 DOUB Y N 4 7Y2 C4 C7 SING N N 5 7Y2 C4 C5 DOUB Y N 6 7Y2 C6 C5 SING Y N 7 7Y2 C7 O8 SING N N 8 7Y2 N23 C24 SING N N 9 7Y2 N23 C22 SING N N 10 7Y2 O26 C24 DOUB N N 11 7Y2 O8 C9 SING N N 12 7Y2 C24 C20 SING N N 13 7Y2 N10 C9 SING N N 14 7Y2 N10 C11 SING N N 15 7Y2 C9 O29 DOUB N N 16 7Y2 C10 C11 SING N N 17 7Y2 C22 C21 SING N N 18 7Y2 O33 C12 DOUB N N 19 7Y2 C11 C12 SING N N 20 7Y2 C11 C30 SING N N 21 7Y2 C20 C21 SING N N 22 7Y2 C20 C19 SING N N 23 7Y2 C12 N13 SING N N 24 7Y2 C23 C35 SING N N 25 7Y2 C19 C17 SING N N 26 7Y2 N13 C14 SING N N 27 7Y2 N16 C17 SING N N 28 7Y2 N16 C15 SING N N 29 7Y2 C14 C15 SING N N 30 7Y2 C14 C34 SING N N 31 7Y2 C36 C35 SING N N 32 7Y2 C35 C34 SING N N 33 7Y2 C35 C37 SING N N 34 7Y2 C17 C27 SING N N 35 7Y2 C15 O38 DOUB N N 36 7Y2 C27 O28 SING N N 37 7Y2 C1 H1 SING N N 38 7Y2 C10 H2 SING N N 39 7Y2 C10 H3 SING N N 40 7Y2 C10 H4 SING N N 41 7Y2 C14 H5 SING N N 42 7Y2 C17 H6 SING N N 43 7Y2 C19 H7 SING N N 44 7Y2 C19 H8 SING N N 45 7Y2 C2 H9 SING N N 46 7Y2 C20 H10 SING N N 47 7Y2 C21 H11 SING N N 48 7Y2 C21 H12 SING N N 49 7Y2 C22 H13 SING N N 50 7Y2 C22 H14 SING N N 51 7Y2 C23 H15 SING N N 52 7Y2 C23 H16 SING N N 53 7Y2 C23 H17 SING N N 54 7Y2 C27 H18 SING N N 55 7Y2 C27 H19 SING N N 56 7Y2 C3 H20 SING N N 57 7Y2 C30 H21 SING N N 58 7Y2 C30 H22 SING N N 59 7Y2 C30 H23 SING N N 60 7Y2 C34 H24 SING N N 61 7Y2 C34 H25 SING N N 62 7Y2 C36 H26 SING N N 63 7Y2 C36 H27 SING N N 64 7Y2 C36 H28 SING N N 65 7Y2 C37 H29 SING N N 66 7Y2 C37 H30 SING N N 67 7Y2 C37 H31 SING N N 68 7Y2 C5 H32 SING N N 69 7Y2 C6 H33 SING N N 70 7Y2 C7 H34 SING N N 71 7Y2 C7 H35 SING N N 72 7Y2 N10 H36 SING N N 73 7Y2 N13 H37 SING N N 74 7Y2 N16 H38 SING N N 75 7Y2 N23 H39 SING N N 76 7Y2 O28 H40 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7Y2 SMILES ACDLabs 12.01 "O=C(OCc1ccccc1)NC(C)(C)C(=O)NC(CC(C)(C)C)C(=O)NC(CC1CCNC1=O)CO" 7Y2 InChI InChI 1.03 "InChI=1S/C26H40N4O6/c1-25(2,3)14-20(22(33)28-19(15-31)13-18-11-12-27-21(18)32)29-23(34)26(4,5)30-24(35)36-16-17-9-7-6-8-10-17/h6-10,18-20,31H,11-16H2,1-5H3,(H,27,32)(H,28,33)(H,29,34)(H,30,35)/t18-,19-,20-/m0/s1" 7Y2 InChIKey InChI 1.03 IGYKFNIEXCKNFT-UFYCRDLUSA-N 7Y2 SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)C[C@H](NC(=O)C(C)(C)NC(=O)OCc1ccccc1)C(=O)N[C@H](CO)C[C@@H]2CCNC2=O" 7Y2 SMILES CACTVS 3.385 "CC(C)(C)C[CH](NC(=O)C(C)(C)NC(=O)OCc1ccccc1)C(=O)N[CH](CO)C[CH]2CCNC2=O" 7Y2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)CO)NC(=O)C(C)(C)NC(=O)OCc2ccccc2" 7Y2 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)CC(C(=O)NC(CC1CCNC1=O)CO)NC(=O)C(C)(C)NC(=O)OCc2ccccc2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 7Y2 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(benzyloxy)carbonyl]-2-methyl-L-alanyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-4-methyl-L-leucinamide" 7Y2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[1-[[(2~{S})-4,4-dimethyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-2-methyl-1-oxidanylidene-propan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7Y2 "Create component" 2021-08-23 RCSB 7Y2 "Initial release" 2022-07-20 RCSB 7Y2 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 7Y2 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C27 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #