data_7YB # _chem_comp.id 7YB _chem_comp.name "benzyl (1-{[(2S)-3-cyclohexyl-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-1-oxopropan-2-yl]carbamoyl}cyclopropyl)carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H40 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-08-23 _chem_comp.pdbx_modified_date 2022-07-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 528.640 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 7YB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7RVW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7YB C1 C1 C 0 1 Y N N -6.263 -21.375 -17.785 6.264 -1.183 -0.173 C1 7YB 1 7YB C10 C2 C 0 1 N N N -10.837 -18.293 -18.747 2.543 4.411 -0.163 C10 7YB 2 7YB C11 C3 C 0 1 N N N -9.735 -17.574 -18.069 2.062 3.144 0.546 C11 7YB 3 7YB C12 C4 C 0 1 N N N -10.202 -16.242 -17.575 0.729 2.578 0.132 C12 7YB 4 7YB C13 C5 C 0 1 N N N -7.512 -13.149 -18.308 -1.903 -0.369 -2.135 C13 7YB 5 7YB C14 C6 C 0 1 N N S -9.865 -13.904 -17.593 -0.792 0.698 -0.168 C14 7YB 6 7YB C15 C7 C 0 1 N N N -11.273 -13.424 -17.505 -1.202 -0.455 0.711 C15 7YB 7 7YB C16 C8 C 0 1 N N N -6.785 -11.948 -18.873 -2.927 0.760 -2.278 C16 7YB 8 7YB C17 C9 C 0 1 N N S -13.130 -12.404 -16.383 -2.901 -1.950 1.615 C17 7YB 9 7YB C18 C10 C 0 1 N N N -5.305 -12.253 -18.985 -4.242 0.191 -2.813 C18 7YB 10 7YB C19 C11 C 0 1 N N N -14.047 -13.261 -15.526 -4.416 -1.860 1.813 C19 7YB 11 7YB C2 C12 C 0 1 Y N N -5.470 -22.490 -18.068 5.801 -2.475 -0.007 C2 7YB 12 7YB C20 C13 C 0 1 N N S -14.072 -14.714 -15.911 -4.763 -0.531 2.488 C20 7YB 13 7YB C21 C14 C 0 1 N N N -14.773 -14.933 -17.238 -6.287 -0.428 2.728 C21 7YB 14 7YB C22 C15 C 0 1 N N N -15.473 -16.270 -17.103 -6.755 0.328 1.465 C22 7YB 15 7YB C23 C16 C 0 1 N N N -4.727 -12.478 -17.623 -4.001 -0.455 -4.179 C23 7YB 16 7YB C24 C17 C 0 1 N N N -14.871 -15.633 -14.989 -4.454 0.627 1.566 C24 7YB 17 7YB C25 C18 C 0 1 N N N -5.437 -13.632 -17.013 -2.977 -1.583 -4.036 C25 7YB 18 7YB C26 C19 C 0 1 N N N -6.927 -13.358 -16.948 -1.662 -1.014 -3.501 C26 7YB 19 7YB C3 C20 C 0 1 Y N N -5.830 -23.402 -19.084 6.632 -3.444 0.522 C3 7YB 20 7YB C30 C21 C 0 1 N N N -9.768 -17.567 -19.565 2.063 4.482 1.288 C30 7YB 21 7YB C34 C22 C 0 1 N N N -9.008 -12.891 -18.336 -0.588 0.200 -1.600 C34 7YB 22 7YB C4 C23 C 0 1 Y N N -6.997 -23.189 -19.845 7.927 -3.122 0.883 C4 7YB 23 7YB C5 C24 C 0 1 Y N N -7.798 -22.087 -19.563 8.390 -1.831 0.716 C5 7YB 24 7YB C6 C25 C 0 1 Y N N -7.427 -21.212 -18.545 7.561 -0.862 0.183 C6 7YB 25 7YB C7 C26 C 0 1 N N N -5.856 -20.380 -16.707 5.357 -0.126 -0.749 C7 7YB 26 7YB C8 C27 C 0 1 N N N -13.153 -10.929 -16.048 -2.542 -3.328 1.055 C8 7YB 27 7YB C9 C28 C 0 1 N N N -7.313 -18.230 -17.208 3.777 1.508 -0.020 C9 7YB 28 7YB N10 N1 N 0 1 N N N -8.606 -18.389 -17.583 3.076 2.158 0.930 N10 7YB 29 7YB N13 N2 N 0 1 N N N -9.802 -15.180 -18.232 0.459 1.273 0.333 N13 7YB 30 7YB N16 N3 N 0 1 N N N -11.780 -12.899 -16.413 -2.469 -0.914 0.674 N16 7YB 31 7YB N23 N4 N 0 1 N N N -15.644 -16.425 -15.690 -5.587 1.092 1.011 N23 7YB 32 7YB O26 O1 O 0 1 N N N -14.783 -15.616 -13.817 -3.345 1.072 1.357 O26 7YB 33 7YB O29 O2 O 0 1 N N N -6.632 -17.279 -17.489 3.635 1.804 -1.190 O29 7YB 34 7YB O33 O3 O 0 1 N N N -10.933 -16.212 -16.662 -0.102 3.297 -0.382 O33 7YB 35 7YB O38 O4 O 0 1 N N N -11.910 -13.550 -18.464 -0.393 -0.971 1.452 O38 7YB 36 7YB O8 O5 O 0 1 N N N -6.724 -19.281 -16.380 4.636 0.531 0.327 O8 7YB 37 7YB O9 O6 O 0 1 N N N -14.406 -10.298 -16.034 -3.288 -3.567 -0.139 O9 7YB 38 7YB H1 H1 H 0 1 N N N -11.862 -17.896 -18.704 3.613 4.512 -0.345 H1 7YB 39 7YB H2 H2 H 0 1 N N N -10.868 -19.392 -18.733 1.895 4.836 -0.929 H2 7YB 40 7YB H3 H3 H 0 1 N N N -7.291 -14.026 -18.934 -2.283 -1.118 -1.441 H3 7YB 41 7YB H4 H4 H 0 1 N N N -9.469 -13.995 -16.571 -1.572 1.459 -0.156 H4 7YB 42 7YB H5 H5 H 0 1 N N N -6.931 -11.085 -18.206 -3.099 1.219 -1.304 H5 7YB 43 7YB H6 H6 H 0 1 N N N -7.186 -11.713 -19.870 -2.546 1.510 -2.971 H6 7YB 44 7YB H7 H7 H 0 1 N N N -13.519 -12.485 -17.409 -2.400 -1.804 2.571 H7 7YB 45 7YB H8 H8 H 0 1 N N N -5.164 -13.157 -19.595 -4.622 -0.559 -2.119 H8 7YB 46 7YB H9 H9 H 0 1 N N N -4.793 -11.405 -19.463 -4.971 0.994 -2.914 H9 7YB 47 7YB H10 H10 H 0 1 N N N -13.711 -13.187 -14.481 -4.913 -1.917 0.845 H10 7YB 48 7YB H11 H11 H 0 1 N N N -15.069 -12.864 -15.612 -4.749 -2.685 2.443 H11 7YB 49 7YB H12 H12 H 0 1 N N N -4.567 -22.657 -17.500 4.789 -2.726 -0.289 H12 7YB 50 7YB H13 H13 H 0 1 N N N -13.040 -15.089 -15.983 -4.219 -0.427 3.427 H13 7YB 51 7YB H14 H14 H 0 1 N N N -14.042 -14.962 -18.060 -6.741 -1.418 2.781 H14 7YB 52 7YB H15 H15 H 0 1 N N N -15.504 -14.132 -17.425 -6.502 0.147 3.629 H15 7YB 53 7YB H16 H16 H 0 1 N N N -16.446 -16.257 -17.616 -7.065 -0.379 0.695 H16 7YB 54 7YB H17 H17 H 0 1 N N N -14.853 -17.080 -17.514 -7.575 1.003 1.711 H17 7YB 55 7YB H18 H18 H 0 1 N N N -3.653 -12.700 -17.704 -4.938 -0.860 -4.560 H18 7YB 56 7YB H19 H19 H 0 1 N N N -4.870 -11.581 -17.003 -3.620 0.295 -4.873 H19 7YB 57 7YB H20 H20 H 0 1 N N N -5.259 -14.531 -17.622 -3.358 -2.333 -3.342 H20 7YB 58 7YB H21 H21 H 0 1 N N N -5.054 -13.797 -15.995 -2.805 -2.043 -5.010 H21 7YB 59 7YB H22 H22 H 0 1 N N N -7.097 -12.454 -16.344 -1.281 -0.264 -4.195 H22 7YB 60 7YB H23 H23 H 0 1 N N N -7.427 -14.215 -16.473 -0.933 -1.818 -3.399 H23 7YB 61 7YB H24 H24 H 0 1 N N N -5.210 -24.265 -19.278 6.270 -4.453 0.652 H24 7YB 62 7YB H25 H25 H 0 1 N N N -9.025 -18.140 -20.138 2.817 4.629 2.061 H25 7YB 63 7YB H26 H26 H 0 1 N N N -10.018 -16.644 -20.109 1.098 4.953 1.477 H26 7YB 64 7YB H27 H27 H 0 1 N N N -9.189 -11.902 -17.889 0.175 -0.578 -1.609 H27 7YB 65 7YB H28 H28 H 0 1 N N N -9.330 -12.882 -19.388 -0.268 1.030 -2.231 H28 7YB 66 7YB H29 H29 H 0 1 N N N -7.266 -23.872 -20.637 8.575 -3.879 1.300 H29 7YB 67 7YB H30 H30 H 0 1 N N N -8.701 -21.911 -20.129 9.402 -1.579 0.999 H30 7YB 68 7YB H31 H31 H 0 1 N N N -8.067 -20.369 -18.332 7.923 0.147 0.052 H31 7YB 69 7YB H32 H32 H 0 1 N N N -5.710 -20.956 -15.781 5.953 0.610 -1.288 H32 7YB 70 7YB H33 H33 H 0 1 N N N -4.897 -19.944 -17.023 4.647 -0.590 -1.433 H33 7YB 71 7YB H34 H34 H 0 1 N N N -12.710 -10.809 -15.048 -1.476 -3.362 0.830 H34 7YB 72 7YB H35 H35 H 0 1 N Y N -12.529 -10.410 -16.791 -2.782 -4.094 1.793 H35 7YB 73 7YB H36 H36 H 0 1 N N N -8.876 -19.349 -17.507 3.242 1.972 1.867 H36 7YB 74 7YB H37 H37 H 0 1 N N N -9.458 -15.262 -19.167 1.093 0.714 0.809 H37 7YB 75 7YB H38 H38 H 0 1 N N N -11.218 -12.842 -15.588 -3.095 -0.557 0.024 H38 7YB 76 7YB H39 H39 H 0 1 N N N -16.287 -17.072 -15.280 -5.627 1.837 0.391 H39 7YB 77 7YB H40 H40 H 0 1 N N N -14.297 -9.381 -15.813 -3.111 -4.424 -0.550 H40 7YB 78 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7YB C4 C5 DOUB Y N 1 7YB C4 C3 SING Y N 2 7YB C30 C10 SING N N 3 7YB C30 C11 SING N N 4 7YB C5 C6 SING Y N 5 7YB C3 C2 DOUB Y N 6 7YB C18 C16 SING N N 7 7YB C18 C23 SING N N 8 7YB C16 C13 SING N N 9 7YB C10 C11 SING N N 10 7YB C6 C1 DOUB Y N 11 7YB O38 C15 DOUB N N 12 7YB C34 C13 SING N N 13 7YB C34 C14 SING N N 14 7YB C13 C26 SING N N 15 7YB N13 C14 SING N N 16 7YB N13 C12 SING N N 17 7YB C11 N10 SING N N 18 7YB C11 C12 SING N N 19 7YB C2 C1 SING Y N 20 7YB C1 C7 SING N N 21 7YB C23 C25 SING N N 22 7YB C14 C15 SING N N 23 7YB N10 C9 SING N N 24 7YB C12 O33 DOUB N N 25 7YB C15 N16 SING N N 26 7YB O29 C9 DOUB N N 27 7YB C21 C22 SING N N 28 7YB C21 C20 SING N N 29 7YB C9 O8 SING N N 30 7YB C22 N23 SING N N 31 7YB C25 C26 SING N N 32 7YB C7 O8 SING N N 33 7YB N16 C17 SING N N 34 7YB C17 C8 SING N N 35 7YB C17 C19 SING N N 36 7YB C8 O9 SING N N 37 7YB C20 C19 SING N N 38 7YB C20 C24 SING N N 39 7YB N23 C24 SING N N 40 7YB C24 O26 DOUB N N 41 7YB C10 H1 SING N N 42 7YB C10 H2 SING N N 43 7YB C13 H3 SING N N 44 7YB C14 H4 SING N N 45 7YB C16 H5 SING N N 46 7YB C16 H6 SING N N 47 7YB C17 H7 SING N N 48 7YB C18 H8 SING N N 49 7YB C18 H9 SING N N 50 7YB C19 H10 SING N N 51 7YB C19 H11 SING N N 52 7YB C2 H12 SING N N 53 7YB C20 H13 SING N N 54 7YB C21 H14 SING N N 55 7YB C21 H15 SING N N 56 7YB C22 H16 SING N N 57 7YB C22 H17 SING N N 58 7YB C23 H18 SING N N 59 7YB C23 H19 SING N N 60 7YB C25 H20 SING N N 61 7YB C25 H21 SING N N 62 7YB C26 H22 SING N N 63 7YB C26 H23 SING N N 64 7YB C3 H24 SING N N 65 7YB C30 H25 SING N N 66 7YB C30 H26 SING N N 67 7YB C34 H27 SING N N 68 7YB C34 H28 SING N N 69 7YB C4 H29 SING N N 70 7YB C5 H30 SING N N 71 7YB C6 H31 SING N N 72 7YB C7 H32 SING N N 73 7YB C7 H33 SING N N 74 7YB C8 H34 SING N N 75 7YB C8 H35 SING N N 76 7YB N10 H36 SING N N 77 7YB N13 H37 SING N N 78 7YB N16 H38 SING N N 79 7YB N23 H39 SING N N 80 7YB O9 H40 SING N N 81 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7YB SMILES ACDLabs 12.01 "O=C(OCc1ccccc1)NC1(CC1)C(=O)NC(CC1CCCCC1)C(=O)NC(CC1CCNC1=O)CO" 7YB InChI InChI 1.03 "InChI=1S/C28H40N4O6/c33-17-22(16-21-11-14-29-24(21)34)30-25(35)23(15-19-7-3-1-4-8-19)31-26(36)28(12-13-28)32-27(37)38-18-20-9-5-2-6-10-20/h2,5-6,9-10,19,21-23,33H,1,3-4,7-8,11-18H2,(H,29,34)(H,30,35)(H,31,36)(H,32,37)/t21-,22-,23-/m0/s1" 7YB InChIKey InChI 1.03 PNFAFEUIIJFEIL-VABKMULXSA-N 7YB SMILES_CANONICAL CACTVS 3.385 "OC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CCCCC2)NC(=O)C3(CC3)NC(=O)OCc4ccccc4" 7YB SMILES CACTVS 3.385 "OC[CH](C[CH]1CCNC1=O)NC(=O)[CH](CC2CCCCC2)NC(=O)C3(CC3)NC(=O)OCc4ccccc4" 7YB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)COC(=O)NC2(CC2)C(=O)N[C@@H](CC3CCCCC3)C(=O)N[C@@H](C[C@@H]4CCNC4=O)CO" 7YB SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)COC(=O)NC2(CC2)C(=O)NC(CC3CCCCC3)C(=O)NC(CC4CCNC4=O)CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 7YB "SYSTEMATIC NAME" ACDLabs 12.01 "benzyl (1-{[(2S)-3-cyclohexyl-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-1-oxopropan-2-yl]carbamoyl}cyclopropyl)carbamate" 7YB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[1-[[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]carbamoyl]cyclopropyl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7YB "Create component" 2021-08-23 RCSB 7YB "Initial release" 2022-07-20 RCSB #