data_7YI # _chem_comp.id 7YI _chem_comp.name "benzyl [(1S)-1-cyclopropyl-2-{[(2S)-3-cyclopropyl-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-1-oxopropan-2-yl]amino}-2-oxoethyl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H36 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-08-23 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 500.587 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 7YI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7RVX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7YI C1 C1 C 0 1 Y N N N N N 19.969 -7.076 11.912 8.880 2.978 -0.348 C1 7YI 1 7YI C11 C2 C 0 1 N N S N N N 15.899 -1.923 8.366 1.602 -1.549 0.262 C11 7YI 2 7YI C12 C3 C 0 1 N N N N N N 15.671 -0.500 7.944 0.290 -0.974 -0.207 C12 7YI 3 7YI C14 C4 C 0 1 N N S N N N 16.069 1.267 6.299 -2.113 -1.157 -0.569 C14 7YI 4 7YI C15 C5 C 0 1 N N N N N N 14.617 1.384 5.893 -2.707 -0.493 0.647 C15 7YI 5 7YI C17 C6 C 0 1 N N S N N N 12.575 2.714 5.857 -4.483 0.762 1.745 C17 7YI 6 7YI C19 C7 C 0 1 N N N N N N 11.633 2.807 7.059 -5.452 1.861 1.303 C19 7YI 7 7YI C2 C8 C 0 1 Y N N N N N 19.505 -6.189 12.885 8.569 2.412 0.874 C2 7YI 8 7YI C20 C9 C 0 1 N N S N N N 11.721 1.519 7.849 -4.677 2.964 0.579 C20 7YI 9 7YI C21 C10 C 0 1 N N N N N N 11.118 0.377 7.044 -5.631 4.103 0.149 C21 7YI 10 7YI C22 C11 C 0 1 N N N N N N 10.156 -0.338 7.996 -5.986 3.688 -1.296 C22 7YI 11 7YI C24 C12 C 0 1 N N N N N N 10.850 1.591 9.064 -4.110 2.444 -0.724 C24 7YI 12 7YI C25 C13 C 0 1 N N N N N N 12.521 3.961 4.967 -5.236 -0.278 2.576 C25 7YI 13 7YI C28 C14 C 0 1 N N N N N N 18.816 2.575 6.410 -3.378 -2.647 -3.628 C28 7YI 14 7YI C29 C15 C 0 1 N N N N N N 19.424 2.403 5.021 -3.270 -4.027 -2.976 C29 7YI 15 7YI C3 C16 C 0 1 Y N N N N N 19.477 -4.820 12.629 7.722 1.322 0.935 C3 7YI 16 7YI C30 C17 C 0 1 N N N N N N 14.542 -2.571 8.607 1.463 -2.022 1.710 C30 7YI 17 7YI C31 C18 C 0 1 N N N N N N 14.730 -4.084 8.606 2.695 -2.643 2.371 C31 7YI 18 7YI C32 C19 C 0 1 N N N N N N 14.087 -3.389 7.412 1.514 -3.530 1.969 C32 7YI 19 7YI C34 C20 C 0 1 N N N N N N 17.004 1.550 5.111 -3.055 -2.257 -1.061 C34 7YI 20 7YI C4 C21 C 0 1 Y N N N N N 19.909 -4.342 11.396 7.185 0.798 -0.226 C4 7YI 21 7YI C5 C22 C 0 1 Y N N N N N 20.376 -5.231 10.425 7.496 1.364 -1.448 C5 7YI 22 7YI C6 C23 C 0 1 Y N N N N N 20.407 -6.602 10.679 8.339 2.458 -1.509 C6 7YI 23 7YI C7 C24 C 0 1 N N N N N N 19.894 -2.852 11.117 6.262 -0.392 -0.160 C7 7YI 24 7YI C8 C25 C 0 1 N N N N N N 18.453 1.358 5.567 -2.522 -2.835 -2.374 C8 7YI 25 7YI C9 C26 C 0 1 N N N N N N 17.918 -2.419 9.649 3.935 -0.879 0.052 C9 7YI 26 7YI N10 N1 N 0 1 N N N N N N 16.653 -2.013 9.600 2.642 -0.521 0.181 N10 7YI 27 7YI N13 N2 N 0 1 N N N N N N 16.339 -0.043 6.867 -0.816 -1.744 -0.220 N13 7YI 28 7YI N16 N3 N 0 1 N N N N N N 13.934 2.450 6.327 -3.905 0.118 0.563 N16 7YI 29 7YI N23 N4 N 0 1 N N N N N N 10.049 0.532 9.151 -4.858 2.869 -1.756 N23 7YI 30 7YI O26 O1 O 0 1 N N N N N N 10.883 2.529 9.833 -3.123 1.746 -0.822 O26 7YI 31 7YI O27 O2 O 0 1 N N N N N N 11.271 4.060 4.291 -6.352 -0.768 1.830 O27 7YI 32 7YI O29 O3 O 0 1 N N N N N N 18.557 -2.814 8.677 4.238 -2.054 0.002 O29 7YI 33 7YI O33 O4 O 0 1 N N N N N N 14.889 0.176 8.590 0.230 0.181 -0.572 O33 7YI 34 7YI O38 O5 O 0 1 N N N N N N 14.091 0.523 5.194 -2.107 -0.509 1.701 O38 7YI 35 7YI O8 O6 O 0 1 N N N N N N 18.565 -2.353 10.946 4.891 0.066 -0.022 O8 7YI 36 7YI H1 H1 H 0 1 N N N N N N 19.988 -8.136 12.117 9.542 3.830 -0.396 H1 7YI 37 7YI H2 H2 H 0 1 N N N N N N 16.420 -2.464 7.563 1.876 -2.393 -0.372 H2 7YI 38 7YI H3 H3 H 0 1 N N N N N N 16.267 2.030 7.066 -1.976 -0.416 -1.357 H3 7YI 39 7YI H4 H4 H 0 1 N N N N N N 12.248 1.859 5.247 -3.686 1.201 2.345 H4 7YI 40 7YI H5 H5 H 0 1 N N N N N N 11.930 3.653 7.697 -6.198 1.439 0.630 H5 7YI 41 7YI H6 H6 H 0 1 N N N N N N 10.601 2.956 6.709 -5.948 2.281 2.178 H6 7YI 42 7YI H7 H7 H 0 1 N N N N N N 19.167 -6.565 13.839 8.988 2.821 1.781 H7 7YI 43 7YI H8 H8 H 0 1 N N N N N N 12.763 1.296 8.121 -3.881 3.350 1.215 H8 7YI 44 7YI H9 H9 H 0 1 N N N N N N 10.574 0.768 6.172 -6.521 4.124 0.778 H9 7YI 45 7YI H10 H10 H 0 1 N N N N N N 11.906 -0.312 6.706 -5.121 5.065 0.164 H10 7YI 46 7YI H11 H11 H 0 1 N N N N N N 9.173 -0.473 7.522 -6.905 3.103 -1.306 H11 7YI 47 7YI H12 H12 H 0 1 N N N N N N 10.560 -1.319 8.288 -6.092 4.571 -1.927 H12 7YI 48 7YI H13 H13 H 0 1 N N N N N N 13.328 3.905 4.222 -4.568 -1.105 2.816 H13 7YI 49 7YI H14 H14 H 0 1 N Y N N N N 12.662 4.854 5.593 -5.590 0.182 3.499 H14 7YI 50 7YI H15 H15 H 0 1 N N N N N N 19.446 2.456 7.304 -2.858 -2.495 -4.574 H15 7YI 51 7YI H16 H16 H 0 1 N N N N N N 18.069 3.362 6.589 -4.321 -2.111 -3.518 H16 7YI 52 7YI H17 H17 H 0 1 N N N N N N 20.491 2.160 4.914 -4.141 -4.399 -2.437 H17 7YI 53 7YI H18 H18 H 0 1 N N N N N N 19.115 3.065 4.199 -2.678 -4.783 -3.493 H18 7YI 54 7YI H19 H19 H 0 1 N N N N N N 19.122 -4.134 13.383 7.479 0.879 1.890 H19 7YI 55 7YI H20 H20 H 0 1 N N N N N N 13.808 -2.099 9.277 0.802 -1.426 2.338 H20 7YI 56 7YI H21 H21 H 0 1 N N N N N N 14.121 -4.715 9.270 3.605 -2.715 1.775 H21 7YI 57 7YI H22 H22 H 0 1 N N N N N N 15.739 -4.514 8.516 2.845 -2.455 3.435 H22 7YI 58 7YI H23 H23 H 0 1 N N N N N N 14.631 -3.319 6.459 0.886 -3.924 2.767 H23 7YI 59 7YI H24 H24 H 0 1 N N N N N N 13.013 -3.520 7.213 1.646 -4.184 1.107 H24 7YI 60 7YI H25 H25 H 0 1 N N N N N N 16.859 2.584 4.765 -3.113 -3.048 -0.313 H25 7YI 61 7YI H26 H26 H 0 1 N N N N N N 16.779 0.854 4.290 -4.048 -1.839 -1.225 H26 7YI 62 7YI H27 H27 H 0 1 N N N N N N 20.715 -4.854 9.471 7.073 0.957 -2.355 H27 7YI 63 7YI H28 H28 H 0 1 N N N N N N 20.767 -7.288 9.927 8.581 2.901 -2.464 H28 7YI 64 7YI H29 H29 H 0 1 N N N N N N 20.468 -2.657 10.199 6.359 -0.978 -1.074 H29 7YI 65 7YI H30 H30 H 0 1 N N N N N N 20.364 -2.328 11.962 6.527 -1.010 0.698 H30 7YI 66 7YI H31 H31 H 0 1 N N N N N N 18.816 0.359 5.850 -1.439 -2.807 -2.494 H31 7YI 67 7YI H32 H32 H 0 1 N N N N N N 16.201 -1.758 10.455 2.401 0.418 0.221 H32 7YI 68 7YI H33 H33 H 0 1 N N N N N N 17.039 -0.621 6.447 -0.754 -2.686 0.001 H33 7YI 69 7YI H34 H34 H 0 1 N N N N N N 14.359 3.075 6.982 -4.385 0.130 -0.280 H34 7YI 70 7YI H35 H35 H 0 1 N N N N N N 9.442 0.356 9.926 -4.676 2.660 -2.686 H35 7YI 71 7YI H36 H36 H 0 1 N N N N N N 11.265 4.840 3.748 -6.876 -1.433 2.297 H36 7YI 72 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7YI O27 C25 SING N N 1 7YI C25 C17 SING N N 2 7YI C29 C8 SING N N 3 7YI C29 C28 SING N N 4 7YI C34 C8 SING N N 5 7YI C34 C14 SING N N 6 7YI O38 C15 DOUB N N 7 7YI C8 C28 SING N N 8 7YI C17 N16 SING N N 9 7YI C17 C19 SING N N 10 7YI C15 C14 SING N N 11 7YI C15 N16 SING N N 12 7YI C14 N13 SING N N 13 7YI N13 C12 SING N N 14 7YI C21 C20 SING N N 15 7YI C21 C22 SING N N 16 7YI C19 C20 SING N N 17 7YI C32 C31 SING N N 18 7YI C32 C30 SING N N 19 7YI C20 C24 SING N N 20 7YI C12 C11 SING N N 21 7YI C12 O33 DOUB N N 22 7YI C22 N23 SING N N 23 7YI C11 C30 SING N N 24 7YI C11 N10 SING N N 25 7YI C31 C30 SING N N 26 7YI O29 C9 DOUB N N 27 7YI C24 N23 SING N N 28 7YI C24 O26 DOUB N N 29 7YI N10 C9 SING N N 30 7YI C9 O8 SING N N 31 7YI C5 C6 DOUB Y N 32 7YI C5 C4 SING Y N 33 7YI C6 C1 SING Y N 34 7YI O8 C7 SING N N 35 7YI C7 C4 SING N N 36 7YI C4 C3 DOUB Y N 37 7YI C1 C2 DOUB Y N 38 7YI C3 C2 SING Y N 39 7YI C1 H1 SING N N 40 7YI C11 H2 SING N N 41 7YI C14 H3 SING N N 42 7YI C17 H4 SING N N 43 7YI C19 H5 SING N N 44 7YI C19 H6 SING N N 45 7YI C2 H7 SING N N 46 7YI C20 H8 SING N N 47 7YI C21 H9 SING N N 48 7YI C21 H10 SING N N 49 7YI C22 H11 SING N N 50 7YI C22 H12 SING N N 51 7YI C25 H13 SING N N 52 7YI C25 H14 SING N N 53 7YI C28 H15 SING N N 54 7YI C28 H16 SING N N 55 7YI C29 H17 SING N N 56 7YI C29 H18 SING N N 57 7YI C3 H19 SING N N 58 7YI C30 H20 SING N N 59 7YI C31 H21 SING N N 60 7YI C31 H22 SING N N 61 7YI C32 H23 SING N N 62 7YI C32 H24 SING N N 63 7YI C34 H25 SING N N 64 7YI C34 H26 SING N N 65 7YI C5 H27 SING N N 66 7YI C6 H28 SING N N 67 7YI C7 H29 SING N N 68 7YI C7 H30 SING N N 69 7YI C8 H31 SING N N 70 7YI N10 H32 SING N N 71 7YI N13 H33 SING N N 72 7YI N16 H34 SING N N 73 7YI N23 H35 SING N N 74 7YI O27 H36 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7YI SMILES ACDLabs 12.01 "O=C(OCc1ccccc1)NC(C1CC1)C(=O)NC(CC1CC1)C(=O)NC(CC1CCNC1=O)CO" 7YI InChI InChI 1.03 "InChI=1S/C26H36N4O6/c31-14-20(13-19-10-11-27-23(19)32)28-24(33)21(12-16-6-7-16)29-25(34)22(18-8-9-18)30-26(35)36-15-17-4-2-1-3-5-17/h1-5,16,18-22,31H,6-15H2,(H,27,32)(H,28,33)(H,29,34)(H,30,35)/t19-,20-,21-,22-/m0/s1" 7YI InChIKey InChI 1.03 BSCNPZMWSUCVAP-CMOCDZPBSA-N 7YI SMILES_CANONICAL CACTVS 3.385 "OC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CC2)NC(=O)[C@@H](NC(=O)OCc3ccccc3)C4CC4" 7YI SMILES CACTVS 3.385 "OC[CH](C[CH]1CCNC1=O)NC(=O)[CH](CC2CC2)NC(=O)[CH](NC(=O)OCc3ccccc3)C4CC4" 7YI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)COC(=O)N[C@@H](C2CC2)C(=O)N[C@@H](CC3CC3)C(=O)N[C@@H](C[C@@H]4CCNC4=O)CO" 7YI SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)COC(=O)NC(C2CC2)C(=O)NC(CC3CC3)C(=O)NC(CC4CCNC4=O)CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 7YI "SYSTEMATIC NAME" ACDLabs 12.01 "benzyl [(1S)-1-cyclopropyl-2-{[(2S)-3-cyclopropyl-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-1-oxopropan-2-yl]amino}-2-oxoethyl]carbamate" 7YI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[(1~{S})-1-cyclopropyl-2-[[(2~{S})-3-cyclopropyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]amino]-2-oxidanylidene-ethyl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7YI "Create component" 2021-08-23 RCSB 7YI "Initial release" 2022-07-20 RCSB 7YI "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 7YI _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C25 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #