data_7ZH # _chem_comp.id 7ZH _chem_comp.name "methyl 6-[4-[[~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]carbamimidoyl]amino]butylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H34 N10 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-09-17 _chem_comp.pdbx_modified_date 2022-08-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 622.632 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 7ZH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7PPY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 7ZH C1 C1 C 0 1 Y N N 32.632 25.298 185.534 -11.937 1.111 -0.307 C1 7ZH 1 7ZH C10 C2 C 0 1 Y N N 31.580 26.530 182.176 -8.726 -0.131 -1.673 C10 7ZH 2 7ZH C11 C3 C 0 1 N N N 33.746 24.545 186.170 -13.207 1.695 -0.781 C11 7ZH 3 7ZH C12 C4 C 0 1 N N N 27.548 27.996 180.814 -5.008 -1.124 -0.019 C12 7ZH 4 7ZH C13 C5 C 0 1 N N N 25.634 28.787 179.454 -2.583 -1.253 -0.212 C13 7ZH 5 7ZH C14 C6 C 0 1 N N N 25.564 29.969 178.507 -1.413 -1.893 0.539 C14 7ZH 6 7ZH C15 C7 C 0 1 N N N 24.332 30.845 178.660 -0.102 -1.548 -0.171 C15 7ZH 7 7ZH C16 C8 C 0 1 N N N 24.496 31.909 179.717 1.068 -2.188 0.579 C16 7ZH 8 7ZH C17 C9 C 0 1 N N N 25.059 34.263 180.000 3.517 -2.326 0.396 C17 7ZH 9 7ZH C18 C10 C 0 1 N N N 36.097 24.371 186.282 -15.392 2.591 -0.434 C18 7ZH 10 7ZH C19 C11 C 0 1 N N N 25.641 36.652 180.323 5.967 -2.516 0.286 C19 7ZH 11 7ZH C2 C12 C 0 1 Y N N 31.571 25.749 186.319 -11.739 0.896 1.069 C2 7ZH 12 7ZH C20 C13 C 0 1 N N R 26.327 37.828 179.655 7.114 -2.031 -0.603 C20 7ZH 13 7ZH C21 C14 C 0 1 N N S 27.850 37.759 179.528 8.445 -2.638 -0.119 C21 7ZH 14 7ZH C22 C15 C 0 1 N N R 28.328 38.425 180.819 9.328 -1.407 0.202 C22 7ZH 15 7ZH C23 C16 C 0 1 N N R 27.260 39.501 181.000 8.640 -0.290 -0.624 C23 7ZH 16 7ZH C24 C17 C 0 1 Y N N 26.923 39.190 183.494 8.139 1.710 0.831 C24 7ZH 17 7ZH C25 C18 C 0 1 Y N N 26.805 41.196 184.174 9.875 2.962 0.476 C25 7ZH 18 7ZH C26 C19 C 0 1 Y N N 26.702 42.419 184.864 10.881 3.941 0.414 C26 7ZH 19 7ZH C27 C20 C 0 1 Y N N 26.983 43.470 182.821 12.043 2.604 -1.066 C27 7ZH 20 7ZH C28 C21 C 0 1 Y N N 26.998 41.264 182.804 10.034 1.797 -0.295 C28 7ZH 21 7ZH C3 C22 C 0 1 Y N N 30.534 26.447 185.752 -10.576 0.357 1.529 C3 7ZH 22 7ZH C4 C23 C 0 1 Y N N 30.512 26.725 184.362 -9.553 0.009 0.620 C4 7ZH 23 7ZH C5 C24 C 0 1 Y N N 31.594 26.259 183.563 -9.745 0.223 -0.769 C5 7ZH 24 7ZH C6 C25 C 0 1 Y N N 32.643 25.547 184.183 -10.952 0.773 -1.222 C6 7ZH 25 7ZH C7 C26 C 0 1 Y N N 29.461 27.441 183.734 -8.346 -0.546 1.071 C7 7ZH 26 7ZH C8 C27 C 0 1 Y N N 29.477 27.672 182.377 -7.366 -0.874 0.159 C8 7ZH 27 7ZH C9 C28 C 0 1 Y N N 30.551 27.222 181.611 -7.563 -0.660 -1.210 C9 7ZH 28 7ZH N1 N1 N 0 1 N N N 28.439 28.411 181.767 -6.163 -1.427 0.607 N1 7ZH 29 7ZH N10 N2 N 0 1 Y N N 27.093 42.374 182.065 11.123 1.662 -1.043 N10 7ZH 30 7ZH N2 N3 N 0 1 N N N 26.687 28.968 180.441 -3.838 -1.583 0.468 N2 7ZH 31 7ZH N3 N4 N 0 1 N N N 24.979 33.181 179.196 2.323 -1.858 -0.101 N3 7ZH 32 7ZH N4 N5 N 0 1 N N N 25.512 35.452 179.502 4.695 -2.017 -0.243 N4 7ZH 33 7ZH N5 N6 N 0 1 N N N 24.725 34.223 181.254 3.532 -3.063 1.470 N5 7ZH 34 7ZH N6 N7 N 0 1 Y N N 27.074 39.962 182.372 8.926 1.026 -0.048 N6 7ZH 35 7ZH N7 N8 N 0 1 Y N N 26.761 39.876 184.598 8.696 2.846 1.135 N7 7ZH 36 7ZH N8 N9 N 0 1 N N N 26.522 42.513 186.186 10.776 5.111 1.145 N8 7ZH 37 7ZH N9 N10 N 0 1 Y N N 26.798 43.559 184.142 11.936 3.716 -0.362 N9 7ZH 38 7ZH O1 O1 O 0 1 N N N 29.476 26.908 186.469 -10.400 0.156 2.861 O1 7ZH 39 7ZH O2 O2 O 0 1 N N N 27.519 26.856 180.347 -5.022 -0.437 -1.021 O2 7ZH 40 7ZH O3 O3 O 0 1 N N N 34.907 24.731 185.538 -14.170 2.021 0.103 O3 7ZH 41 7ZH O4 O4 O 0 1 N N N 33.622 23.845 187.141 -13.383 1.883 -1.968 O4 7ZH 42 7ZH O5 O5 O 0 1 N N N 28.297 38.480 178.381 9.040 -3.426 -1.151 O5 7ZH 43 7ZH O6 O6 O 0 1 N N N 29.608 39.028 180.650 10.671 -1.615 -0.240 O6 7ZH 44 7ZH O7 O7 O 0 1 N N N 26.050 38.924 180.559 7.235 -0.602 -0.508 O7 7ZH 45 7ZH H5 H1 H 0 1 N N N 32.394 26.185 181.557 -8.867 0.021 -2.733 H5 7ZH 46 7ZH H9 H2 H 0 1 N N N 24.669 28.685 179.973 -2.454 -0.171 -0.232 H9 7ZH 47 7ZH H10 H3 H 0 1 N N N 25.838 27.874 178.875 -2.611 -1.634 -1.233 H10 7ZH 48 7ZH H11 H4 H 0 1 N N N 25.581 29.582 177.477 -1.384 -1.512 1.559 H11 7ZH 49 7ZH H12 H5 H 0 1 N N N 26.451 30.596 178.678 -1.542 -2.975 0.558 H12 7ZH 50 7ZH H13 H6 H 0 1 N N N 24.128 31.336 177.697 -0.131 -1.930 -1.192 H13 7ZH 51 7ZH H14 H7 H 0 1 N N N 23.479 30.207 178.934 0.027 -0.466 -0.191 H14 7ZH 52 7ZH H16 H8 H 0 1 N N N 23.520 32.077 180.195 1.096 -1.807 1.600 H16 7ZH 53 7ZH H15 H9 H 0 1 N N N 25.214 31.546 180.467 0.938 -3.270 0.599 H15 7ZH 54 7ZH H22 H10 H 0 1 N N N 36.988 24.565 185.666 -15.160 3.514 -0.966 H22 7ZH 55 7ZH H21 H11 H 0 1 N N N 36.149 24.971 187.202 -15.853 1.882 -1.122 H21 7ZH 56 7ZH H20 H12 H 0 1 N N N 36.057 23.303 186.542 -16.082 2.807 0.382 H20 7ZH 57 7ZH H24 H13 H 0 1 N N N 24.631 36.972 180.618 5.953 -3.606 0.299 H24 7ZH 58 7ZH H23 H14 H 0 1 N N N 26.219 36.388 181.221 6.110 -2.142 1.300 H23 7ZH 59 7ZH H1 H15 H 0 1 N N N 31.565 25.548 187.380 -12.518 1.161 1.768 H1 7ZH 60 7ZH H25 H16 H 0 1 N N N 25.880 38.011 178.667 6.927 -2.319 -1.638 H25 7ZH 61 7ZH H26 H17 H 0 1 N N N 28.179 36.710 179.500 8.287 -3.238 0.777 H26 7ZH 62 7ZH H28 H18 H 0 1 N N N 28.309 37.711 181.656 9.302 -1.176 1.266 H28 7ZH 63 7ZH H30 H19 H 0 1 N N N 27.521 40.358 180.362 8.960 -0.330 -1.665 H30 7ZH 64 7ZH H31 H20 H 0 1 N N N 26.936 38.110 183.470 7.192 1.362 1.214 H31 7ZH 65 7ZH H34 H21 H 0 1 N N N 27.053 44.410 182.294 12.918 2.461 -1.683 H34 7ZH 66 7ZH H2 H22 H 0 1 N N N 33.469 25.192 183.585 -11.114 0.932 -2.278 H2 7ZH 67 7ZH H3 H23 H 0 1 N N N 28.638 27.810 184.328 -8.186 -0.714 2.126 H3 7ZH 68 7ZH H4 H24 H 0 1 N N N 30.568 27.425 180.550 -6.785 -0.929 -1.909 H4 7ZH 69 7ZH H7 H25 H 0 1 N N N 28.343 29.359 182.070 -6.159 -2.029 1.367 H7 7ZH 70 7ZH H8 H26 H 0 1 N N N 26.779 29.867 180.870 -3.827 -2.131 1.268 H8 7ZH 71 7ZH H17 H27 H 0 1 N N N 25.253 33.253 178.237 2.312 -1.310 -0.900 H17 7ZH 72 7ZH H18 H28 H 0 1 N N N 25.765 35.502 178.536 4.683 -1.469 -1.043 H18 7ZH 73 7ZH H19 H29 H 0 1 N N N 24.851 35.107 181.704 4.374 -3.394 1.820 H19 7ZH 74 7ZH H33 H30 H 0 1 N N N 26.484 43.477 186.450 10.001 5.263 1.708 H33 7ZH 75 7ZH H32 H31 H 0 1 N N N 25.665 42.065 186.438 11.477 5.779 1.094 H32 7ZH 76 7ZH H6 H32 H 0 1 N N N 29.585 26.672 187.383 -10.693 -0.712 3.170 H6 7ZH 77 7ZH H27 H33 H 0 1 N N N 29.243 38.425 178.321 9.881 -3.832 -0.901 H27 7ZH 78 7ZH H29 H34 H 0 1 N N N 29.878 39.433 181.466 11.114 -2.363 0.184 H29 7ZH 79 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 7ZH O5 C21 SING N N 1 7ZH C14 C15 SING N N 2 7ZH C14 C13 SING N N 3 7ZH C15 C16 SING N N 4 7ZH N3 C16 SING N N 5 7ZH N3 C17 SING N N 6 7ZH C13 N2 SING N N 7 7ZH N4 C17 SING N N 8 7ZH N4 C19 SING N N 9 7ZH C21 C20 SING N N 10 7ZH C21 C22 SING N N 11 7ZH C20 C19 SING N N 12 7ZH C20 O7 SING N N 13 7ZH C17 N5 DOUB N N 14 7ZH O2 C12 DOUB N N 15 7ZH N2 C12 SING N N 16 7ZH O7 C23 SING N N 17 7ZH O6 C22 SING N N 18 7ZH C12 N1 SING N N 19 7ZH C22 C23 SING N N 20 7ZH C23 N6 SING N N 21 7ZH C9 C10 DOUB Y N 22 7ZH C9 C8 SING Y N 23 7ZH N1 C8 SING N N 24 7ZH N10 C28 DOUB Y N 25 7ZH N10 C27 SING Y N 26 7ZH C10 C5 SING Y N 27 7ZH N6 C28 SING Y N 28 7ZH N6 C24 SING Y N 29 7ZH C8 C7 DOUB Y N 30 7ZH C28 C25 SING Y N 31 7ZH C27 N9 DOUB Y N 32 7ZH C24 N7 DOUB Y N 33 7ZH C5 C6 DOUB Y N 34 7ZH C5 C4 SING Y N 35 7ZH C7 C4 SING Y N 36 7ZH N9 C26 SING Y N 37 7ZH C25 N7 SING Y N 38 7ZH C25 C26 DOUB Y N 39 7ZH C6 C1 SING Y N 40 7ZH C4 C3 DOUB Y N 41 7ZH C26 N8 SING N N 42 7ZH C1 C11 SING N N 43 7ZH C1 C2 DOUB Y N 44 7ZH O3 C11 SING N N 45 7ZH O3 C18 SING N N 46 7ZH C3 C2 SING Y N 47 7ZH C3 O1 SING N N 48 7ZH C11 O4 DOUB N N 49 7ZH C10 H5 SING N N 50 7ZH C13 H9 SING N N 51 7ZH C13 H10 SING N N 52 7ZH C14 H11 SING N N 53 7ZH C14 H12 SING N N 54 7ZH C15 H13 SING N N 55 7ZH C15 H14 SING N N 56 7ZH C16 H16 SING N N 57 7ZH C16 H15 SING N N 58 7ZH C18 H22 SING N N 59 7ZH C18 H21 SING N N 60 7ZH C18 H20 SING N N 61 7ZH C19 H24 SING N N 62 7ZH C19 H23 SING N N 63 7ZH C2 H1 SING N N 64 7ZH C20 H25 SING N N 65 7ZH C21 H26 SING N N 66 7ZH C22 H28 SING N N 67 7ZH C23 H30 SING N N 68 7ZH C24 H31 SING N N 69 7ZH C27 H34 SING N N 70 7ZH C6 H2 SING N N 71 7ZH C7 H3 SING N N 72 7ZH C9 H4 SING N N 73 7ZH N1 H7 SING N N 74 7ZH N2 H8 SING N N 75 7ZH N3 H17 SING N N 76 7ZH N4 H18 SING N N 77 7ZH N5 H19 SING N N 78 7ZH N8 H33 SING N N 79 7ZH N8 H32 SING N N 80 7ZH O1 H6 SING N N 81 7ZH O5 H27 SING N N 82 7ZH O6 H29 SING N N 83 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 7ZH InChI InChI 1.06 "InChI=1S/C28H34N10O7/c1-44-26(42)15-8-14-4-5-16(10-17(14)18(39)9-15)37-28(43)32-7-3-2-6-31-27(30)33-11-19-21(40)22(41)25(45-19)38-13-36-20-23(29)34-12-35-24(20)38/h4-5,8-10,12-13,19,21-22,25,39-41H,2-3,6-7,11H2,1H3,(H2,29,34,35)(H3,30,31,33)(H2,32,37,43)/t19-,21-,22-,25-/m1/s1" 7ZH InChIKey InChI 1.06 AUWUXQSTBMRGEC-PTGPVQHPSA-N 7ZH SMILES_CANONICAL CACTVS 3.385 "COC(=O)c1cc(O)c2cc(NC(=O)NCCCCNC(=N)NC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)ccc2c1" 7ZH SMILES CACTVS 3.385 "COC(=O)c1cc(O)c2cc(NC(=O)NCCCCNC(=N)NC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)ccc2c1" 7ZH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/NCCCCNC(=O)Nc1ccc2cc(cc(c2c1)O)C(=O)OC)\NC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O" 7ZH SMILES "OpenEye OEToolkits" 2.0.7 "COC(=O)c1cc2ccc(cc2c(c1)O)NC(=O)NCCCCNC(=N)NCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O" # _pdbx_chem_comp_identifier.comp_id 7ZH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "methyl 6-[4-[[~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]carbamimidoyl]amino]butylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 7ZH "Create component" 2021-09-17 PDBE 7ZH "Initial release" 2022-04-06 RCSB 7ZH "Modify descriptor" 2022-08-22 RCSB #