data_801 # _chem_comp.id 801 _chem_comp.name "2-{5-[AMINO(IMINIO)METHYL]-1H-BENZIMIDAZOL-2-YL}PYRIDIN-3-OLATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H11 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms CRA_1801 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-03-14 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 253.259 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 801 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1O33 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 801 C1 C1 C 0 1 Y N N 44.075 -3.037 26.307 3.309 -0.038 -0.001 C1 801 1 801 C2 C2 C 0 1 Y N N 44.531 -1.703 26.361 3.185 -1.433 0.001 C2 801 2 801 C3 C3 C 0 1 Y N N 44.453 -0.955 27.522 1.952 -2.018 0.001 C3 801 3 801 C4 C4 C 0 1 Y N N 43.922 -1.551 28.616 0.806 -1.232 0.000 C4 801 4 801 C5 C5 C 0 1 Y N N 43.464 -2.817 28.613 0.911 0.172 -0.001 C5 801 5 801 C6 C6 C 0 1 Y N N 43.521 -3.606 27.464 2.175 0.766 0.005 C6 801 6 801 C7 C7 C 0 1 N N N 44.193 -3.766 25.109 4.651 0.582 -0.001 C7 801 7 801 N1 N1 N 0 1 N N N 43.918 -5.058 25.110 4.772 1.909 -0.002 N1 801 8 801 N2 N2 N 1 1 N N N 44.581 -3.124 24.014 5.740 -0.186 -0.001 N2 801 9 801 N3 N3 N 0 1 Y N N 43.736 -1.106 29.805 -0.543 -1.515 0.000 N3 801 10 801 N4 N4 N 0 1 Y N N 42.994 -3.173 29.783 -0.350 0.669 -0.001 N4 801 11 801 C8 C8 C 0 1 Y N N 43.202 -2.066 30.484 -1.210 -0.319 -0.001 C8 801 12 801 "C1'" "C1'" C 0 1 Y N N 42.929 -1.929 31.837 -2.681 -0.166 -0.001 "C1'" 801 13 801 "N2'" "N2'" N 0 1 Y N N 42.689 -3.030 32.521 -3.456 -1.244 0.000 "N2'" 801 14 801 "C3'" "C3'" C 0 1 Y N N 42.426 -3.045 33.806 -4.769 -1.150 0.000 "C3'" 801 15 801 "C4'" "C4'" C 0 1 Y N N 42.388 -1.853 34.510 -5.397 0.084 -0.002 "C4'" 801 16 801 "C5'" "C5'" C 0 1 Y N N 42.637 -0.651 33.837 -4.631 1.239 -0.002 "C5'" 801 17 801 "C6'" "C6'" C 0 1 Y N N 42.915 -0.671 32.472 -3.246 1.115 0.003 "C6'" 801 18 801 "O6'" "O6'" O -1 1 N N N 43.160 0.519 31.786 -2.455 2.218 0.003 "O6'" 801 19 801 HC2 HC2 H 0 1 N N N 44.961 -1.232 25.494 4.071 -2.050 0.001 HC2 801 20 801 HC3 HC3 H 0 1 N N N 44.800 0.063 27.569 1.867 -3.095 0.002 HC3 801 21 801 HC6 HC6 H 0 1 N N N 43.153 -4.619 27.473 2.270 1.842 0.010 HC6 801 22 801 HH11 HH11 H 0 0 N N N 43.642 -5.496 25.985 3.979 2.468 -0.003 HH11 801 23 801 HH12 HH12 H 0 0 N N N 43.960 -5.669 24.327 5.652 2.316 -0.003 HH12 801 24 801 HH21 HH21 H 0 0 N N N 44.766 -2.135 24.045 6.620 0.221 -0.001 HH21 801 25 801 HH22 HH22 H 0 0 N N N 44.721 -3.570 23.137 5.652 -1.152 0.004 HH22 801 26 801 HN3 HN3 H 0 1 N N N 43.938 -0.229 30.201 -0.946 -2.398 0.002 HN3 801 27 801 "HC3'" "HC3'" H 0 0 N N N 42.424 -3.985 34.342 -5.366 -2.050 0.000 "HC3'" 801 28 801 "HC4'" "HC4'" H 0 0 N N N 42.171 -1.862 35.569 -6.475 0.147 -0.002 "HC4'" 801 29 801 "HC5'" "HC5'" H 0 0 N N N 42.612 0.283 34.381 -5.099 2.212 -0.003 "HC5'" 801 30 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 801 C1 C2 DOUB Y N 1 801 C1 C6 SING Y N 2 801 C1 C7 SING N N 3 801 C2 C3 SING Y N 4 801 C2 HC2 SING N N 5 801 C3 C4 DOUB Y N 6 801 C3 HC3 SING N N 7 801 C4 C5 SING Y N 8 801 C4 N3 SING Y N 9 801 C5 C6 DOUB Y N 10 801 C5 N4 SING Y N 11 801 C6 HC6 SING N N 12 801 C7 N1 SING N N 13 801 C7 N2 DOUB N N 14 801 N1 HH11 SING N N 15 801 N1 HH12 SING N N 16 801 N2 HH21 SING N N 17 801 N2 HH22 SING N N 18 801 N3 C8 SING Y N 19 801 N3 HN3 SING N N 20 801 N4 C8 DOUB Y N 21 801 C8 "C1'" SING Y N 22 801 "C1'" "N2'" DOUB Y N 23 801 "C1'" "C6'" SING Y N 24 801 "N2'" "C3'" SING Y N 25 801 "C3'" "C4'" DOUB Y N 26 801 "C3'" "HC3'" SING N N 27 801 "C4'" "C5'" SING Y N 28 801 "C4'" "HC4'" SING N N 29 801 "C5'" "C6'" DOUB Y N 30 801 "C5'" "HC5'" SING N N 31 801 "C6'" "O6'" SING N N 32 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 801 SMILES ACDLabs 10.04 "[O-]c3cccnc3c2nc1cc(ccc1n2)\C(=[NH2+])N" 801 SMILES_CANONICAL CACTVS 3.341 "NC(=[NH2+])c1ccc2[nH]c(nc2c1)c3ncccc3[O-]" 801 SMILES CACTVS 3.341 "NC(=[NH2+])c1ccc2[nH]c(nc2c1)c3ncccc3[O-]" 801 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(c(nc1)c2[nH]c3ccc(cc3n2)C(=[NH2+])N)[O-]" 801 SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(c(nc1)c2[nH]c3ccc(cc3n2)C(=[NH2+])N)[O-]" 801 InChI InChI 1.03 "InChI=1S/C13H11N5O/c14-12(15)7-3-4-8-9(6-7)18-13(17-8)11-10(19)2-1-5-16-11/h1-6,19H,(H3,14,15)(H,17,18)" 801 InChIKey InChI 1.03 FQCDQFDJHSXQKY-UHFFFAOYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 801 "SYSTEMATIC NAME" ACDLabs 10.04 "2-{5-[amino(iminio)methyl]-1H-benzimidazol-2-yl}pyridin-3-olate" 801 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[5-(amino-azaniumylidene-methyl)-1H-benzimidazol-2-yl]pyridin-3-olate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 801 "Create component" 2003-03-14 RCSB 801 "Modify aromatic_flag" 2011-06-04 RCSB 801 "Modify descriptor" 2011-06-04 RCSB 801 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 801 _pdbx_chem_comp_synonyms.name CRA_1801 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##