data_804 # _chem_comp.id 804 _chem_comp.name "6-(1,4,5,6-tetrahydropyrimidin-2-yl)-2-[4'-(1,4,5,6-tetrahydropyrimidin-2-yl)biphenyl-4-yl]-1H-indole" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H27 N5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms DB1804 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-09-29 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 433.547 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 804 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3U05 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 804 CAA CAA C 0 1 Y N N 10.682 27.065 2.988 5.756 -1.314 0.010 CAA 804 1 804 CAB CAB C 0 1 Y N N 12.039 25.108 2.606 5.972 1.094 0.020 CAB 804 2 804 CAC CAC C 0 1 Y N N 10.055 26.426 4.068 4.385 -1.191 0.008 CAC 804 3 804 CAD CAD C 0 1 Y N N 11.415 24.465 3.684 4.601 1.217 0.017 CAD 804 4 804 CAE CAE C 0 1 Y N N 8.528 24.730 6.017 1.735 1.474 0.011 CAE 804 5 804 CAF CAF C 0 1 Y N N 10.586 23.503 6.217 1.519 -0.934 0.001 CAF 804 6 804 CAG CAG C 0 1 Y N N 8.027 24.032 7.154 0.364 1.598 0.008 CAG 804 7 804 CAH CAH C 0 1 Y N N 10.096 22.820 7.329 0.148 -0.812 -0.001 CAH 804 8 804 CAI CAI C 0 1 Y N N 6.609 20.224 12.449 -6.363 1.657 -0.010 CAI 804 9 804 CAJ CAJ C 0 1 Y N N 6.281 21.068 11.388 -5.135 2.247 -0.004 CAJ 804 10 804 CAK CAK C 0 1 Y N N 8.875 20.268 11.709 -5.341 -0.540 -0.015 CAK 804 11 804 CAL CAL C 0 1 Y N N 7.158 22.290 9.436 -2.595 1.760 0.002 CAL 804 12 804 CAM CAM C 0 1 N N N 13.855 28.556 -0.644 10.761 -0.511 -0.445 CAM 804 13 804 CAN CAN C 0 1 N N N 8.791 17.613 16.117 -10.314 -1.492 0.434 CAN 804 14 804 CAO CAO C 0 1 N N N 12.392 28.908 -0.524 9.989 -1.741 0.038 CAO 804 15 804 CAP CAP C 0 1 N N N 7.648 17.111 15.275 -9.170 -2.382 -0.054 CAP 804 16 804 CAQ CAQ C 0 1 N N N 13.991 27.064 -0.501 10.241 0.719 0.314 CAQ 804 17 804 CAR CAR C 0 1 N N N 9.915 18.055 15.211 -10.244 -0.154 -0.318 CAR 804 18 804 NAS NAS N 0 1 N N N 11.742 28.153 0.588 8.553 -1.487 0.016 NAS 804 19 804 NAT NAT N 0 1 N N N 7.368 18.032 14.147 -7.906 -1.655 -0.027 NAT 804 20 804 NAU NAU N 0 1 N N N 13.539 26.611 0.835 8.804 0.838 0.024 NAU 804 21 804 NAV NAV N 0 1 N N N 9.494 19.101 14.240 -8.934 0.447 -0.024 NAV 804 22 804 NAW NAW N 0 1 Y N N 9.219 21.651 9.700 -2.805 -0.459 -0.008 NAW 804 23 804 CAX CAX C 0 1 N N N 12.306 27.061 1.163 8.033 -0.305 0.019 CAX 804 24 804 CAY CAY C 0 1 N N N 8.257 18.950 13.706 -7.820 -0.365 -0.022 CAY 804 25 804 CAZ CAZ C 0 1 Y N N 11.676 26.409 2.246 6.559 -0.172 0.016 CAZ 804 26 804 CBA CBA C 0 1 Y N N 7.926 19.814 12.628 -6.480 0.261 -0.015 CBA 804 27 804 CBB CBB C 0 1 Y N N 10.408 25.113 4.419 3.798 0.075 0.011 CBB 804 28 804 CBC CBC C 0 1 Y N N 9.821 24.449 5.534 2.322 0.208 0.008 CBC 804 29 804 CBD CBD C 0 1 Y N N 8.820 23.076 7.826 -0.440 0.456 0.002 CBD 804 30 804 CBE CBE C 0 1 Y N N 8.398 22.375 8.932 -1.911 0.588 -0.001 CBE 804 31 804 CBF CBF C 0 1 Y N N 7.222 21.484 10.529 -3.978 1.456 -0.003 CBF 804 32 804 CBG CBG C 0 1 Y N N 8.504 21.087 10.683 -4.086 0.051 -0.009 CBG 804 33 804 HAA HAA H 0 1 N N N 10.397 28.073 2.725 6.210 -2.294 0.012 HAA 804 34 804 HAB HAB H 0 1 N N N 12.807 24.593 2.048 6.593 1.977 0.024 HAB 804 35 804 HAC HAC H 0 1 N N N 9.296 26.947 4.633 3.763 -2.074 0.003 HAC 804 36 804 HAD HAD H 0 1 N N N 11.711 23.462 3.952 4.146 2.197 0.020 HAD 804 37 804 HAE HAE H 0 1 N N N 7.917 25.473 5.526 2.357 2.357 0.012 HAE 804 38 804 HAF HAF H 0 1 N N N 11.588 23.294 5.874 1.974 -1.913 -0.002 HAF 804 39 804 HAG HAG H 0 1 N N N 7.027 24.237 7.507 -0.090 2.578 0.011 HAG 804 40 804 HAH HAH H 0 1 N N N 10.716 22.080 7.813 -0.473 -1.695 -0.006 HAH 804 41 804 HAI HAI H 0 1 N N N 5.841 19.889 13.131 -7.252 2.270 -0.006 HAI 804 42 804 HAJ HAJ H 0 1 N N N 5.258 21.390 11.257 -5.054 3.323 0.001 HAJ 804 43 804 HAK HAK H 0 1 N N N 9.908 19.969 11.811 -5.435 -1.615 -0.018 HAK 804 44 804 HAL HAL H 0 1 N N N 6.274 22.772 9.046 -2.161 2.749 0.007 HAL 804 45 804 HAM HAM H 0 1 N N N 14.238 28.875 -1.625 11.824 -0.644 -0.243 HAM 804 46 804 HAMA HAMA H 0 0 N N N 14.428 29.062 0.147 10.602 -0.376 -1.515 HAMA 804 47 804 HAN HAN H 0 1 N N N 8.454 18.463 16.728 -11.269 -1.977 0.229 HAN 804 48 804 HANA HANA H 0 0 N N N 9.144 16.807 16.777 -10.212 -1.317 1.505 HANA 804 49 804 HAO HAO H 0 1 N N N 12.301 29.986 -0.323 10.215 -2.586 -0.613 HAO 804 50 804 HAOA HAOA H 0 0 N N N 11.887 28.656 -1.468 10.296 -1.980 1.056 HAOA 804 51 804 HAP HAP H 0 1 N N N 7.911 16.122 14.871 -9.095 -3.257 0.592 HAP 804 52 804 HAPA HAPA H 0 0 N N N 6.749 17.034 15.904 -9.376 -2.706 -1.074 HAPA 804 53 804 HAQ HAQ H 0 1 N N N 13.376 26.575 -1.270 10.393 0.585 1.385 HAQ 804 54 804 HAQA HAQA H 0 0 N N N 15.048 26.788 -0.632 10.764 1.613 -0.027 HAQA 804 55 804 HAR HAR H 0 1 N N N 10.723 18.465 15.835 -10.341 -0.326 -1.390 HAR 804 56 804 HARA HARA H 0 0 N N N 10.270 17.180 14.647 -11.040 0.506 0.026 HARA 804 57 804 HNAU HNAU H 0 0 N N N 14.090 26.031 1.434 8.406 1.704 -0.159 HNAU 804 58 804 HNAV HNAV H 0 0 N N N 10.087 19.868 13.996 -8.855 1.395 0.164 HNAV 804 59 804 HNAW HNAW H 0 0 N N N 10.204 21.548 9.563 -2.571 -1.401 -0.011 HNAW 804 60 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 804 CAA CAC DOUB Y N 1 804 CAA CAZ SING Y N 2 804 CAB CAD SING Y N 3 804 CAB CAZ DOUB Y N 4 804 CAC CBB SING Y N 5 804 CAD CBB DOUB Y N 6 804 CAE CAG DOUB Y N 7 804 CAE CBC SING Y N 8 804 CAF CAH SING Y N 9 804 CAF CBC DOUB Y N 10 804 CAG CBD SING Y N 11 804 CAH CBD DOUB Y N 12 804 CAI CAJ DOUB Y N 13 804 CAI CBA SING Y N 14 804 CAJ CBF SING Y N 15 804 CAK CBA DOUB Y N 16 804 CAK CBG SING Y N 17 804 CAL CBE DOUB Y N 18 804 CAL CBF SING Y N 19 804 CAM CAO SING N N 20 804 CAM CAQ SING N N 21 804 CAN CAP SING N N 22 804 CAN CAR SING N N 23 804 CAO NAS SING N N 24 804 CAP NAT SING N N 25 804 CAQ NAU SING N N 26 804 CAR NAV SING N N 27 804 NAS CAX DOUB N N 28 804 NAT CAY DOUB N N 29 804 NAU CAX SING N N 30 804 NAV CAY SING N N 31 804 NAW CBE SING Y N 32 804 NAW CBG SING Y N 33 804 CAX CAZ SING N N 34 804 CAY CBA SING N N 35 804 CBB CBC SING N N 36 804 CBD CBE SING N N 37 804 CBF CBG DOUB Y N 38 804 CAA HAA SING N N 39 804 CAB HAB SING N N 40 804 CAC HAC SING N N 41 804 CAD HAD SING N N 42 804 CAE HAE SING N N 43 804 CAF HAF SING N N 44 804 CAG HAG SING N N 45 804 CAH HAH SING N N 46 804 CAI HAI SING N N 47 804 CAJ HAJ SING N N 48 804 CAK HAK SING N N 49 804 CAL HAL SING N N 50 804 CAM HAM SING N N 51 804 CAM HAMA SING N N 52 804 CAN HAN SING N N 53 804 CAN HANA SING N N 54 804 CAO HAO SING N N 55 804 CAO HAOA SING N N 56 804 CAP HAP SING N N 57 804 CAP HAPA SING N N 58 804 CAQ HAQ SING N N 59 804 CAQ HAQA SING N N 60 804 CAR HAR SING N N 61 804 CAR HARA SING N N 62 804 NAU HNAU SING N N 63 804 NAV HNAV SING N N 64 804 NAW HNAW SING N N 65 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 804 SMILES ACDLabs 12.01 "N6=C(c1cc5c(cc1)cc(c4ccc(c3ccc(C2=NCCCN2)cc3)cc4)n5)NCCC6" 804 InChI InChI 1.03 "InChI=1S/C28H27N5/c1-13-29-27(30-14-1)22-9-5-20(6-10-22)19-3-7-21(8-4-19)25-17-23-11-12-24(18-26(23)33-25)28-31-15-2-16-32-28/h3-12,17-18,33H,1-2,13-16H2,(H,29,30)(H,31,32)" 804 InChIKey InChI 1.03 VZIHOYLEOYSFAG-UHFFFAOYSA-N 804 SMILES_CANONICAL CACTVS 3.370 "C1CNC(=NC1)c2ccc(cc2)c3ccc(cc3)c4[nH]c5cc(ccc5c4)C6=NCCCN6" 804 SMILES CACTVS 3.370 "C1CNC(=NC1)c2ccc(cc2)c3ccc(cc3)c4[nH]c5cc(ccc5c4)C6=NCCCN6" 804 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "c1cc(ccc1c2ccc(cc2)C3=NCCCN3)c4cc5ccc(cc5[nH]4)C6=NCCCN6" 804 SMILES "OpenEye OEToolkits" 1.7.2 "c1cc(ccc1c2ccc(cc2)C3=NCCCN3)c4cc5ccc(cc5[nH]4)C6=NCCCN6" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 804 "SYSTEMATIC NAME" ACDLabs 12.01 "6-(1,4,5,6-tetrahydropyrimidin-2-yl)-2-[4'-(1,4,5,6-tetrahydropyrimidin-2-yl)biphenyl-4-yl]-1H-indole" 804 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "6-(1,4,5,6-tetrahydropyrimidin-2-yl)-2-[4-[4-(1,4,5,6-tetrahydropyrimidin-2-yl)phenyl]phenyl]-1H-indole" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 804 "Create component" 2011-09-29 RCSB 804 "Initial release" 2012-09-07 RCSB 804 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 804 _pdbx_chem_comp_synonyms.name DB1804 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##