data_80J # _chem_comp.id 80J _chem_comp.name ;2'-deoxy-2'-fluorocytidine 5'-(tetrahydrogen triphosphate) ; _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H15 F N3 O13 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-08-24 _chem_comp.pdbx_modified_date 2023-05-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 485.147 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 80J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FV9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 80J "C1'" C1 C 0 1 N N R -9.809 2.696 16.868 3.983 -0.173 -1.190 "C1'" 80J 1 80J C2 C2 C 0 1 N N N -7.819 2.589 15.452 4.941 0.962 0.736 C2 80J 2 80J "C2'" C3 C 0 1 N N R -10.005 3.627 18.112 4.629 -1.544 -0.912 "C2'" 80J 3 80J "C3'" C4 C 0 1 N N R -11.355 3.165 18.634 3.538 -2.329 -0.144 "C3'" 80J 4 80J C4 C5 C 0 1 N N N -7.364 4.045 13.719 6.284 2.834 0.554 C4 80J 5 80J "C4'" C6 C 0 1 N N R -11.916 2.388 17.675 2.249 -1.562 -0.536 "C4'" 80J 6 80J C5 C7 C 0 1 N N N -8.540 4.734 13.999 6.155 2.787 -0.850 C5 80J 7 80J "C5'" C8 C 0 1 N N N -13.328 2.758 17.291 1.164 -1.755 0.525 "C5'" 80J 8 80J C6 C9 C 0 1 N N N -9.341 4.286 15.053 5.411 1.802 -1.407 C6 80J 9 80J F2 F1 F 0 1 N N N -9.013 3.404 18.979 4.943 -2.190 -2.113 F2 80J 10 80J N1 N1 N 0 1 N N N -8.945 3.225 15.767 4.799 0.891 -0.600 N1 80J 11 80J N3 N2 N 0 1 N N N -7.035 2.987 14.457 5.674 1.922 1.299 N3 80J 12 80J N4 N3 N 0 1 N N N -6.496 4.462 12.631 7.034 3.823 1.147 N4 80J 13 80J O1A O1 O 0 1 N N N -15.402 0.681 14.747 -1.762 -2.538 1.295 O1A 80J 14 80J O1B O2 O 0 1 N N N -14.364 4.332 14.385 -4.557 -0.178 1.656 O1B 80J 15 80J O1G O3 O 0 1 N N N -17.963 2.439 11.518 -7.306 0.586 -0.418 O1G 80J 16 80J O2 O4 O 0 1 N N N -7.480 1.637 16.088 4.386 0.138 1.444 O2 80J 17 80J O2A O5 O 0 1 N N N -15.896 0.963 17.167 -1.174 -0.302 2.309 O2A 80J 18 80J O2B O6 O 0 1 N N N -16.598 5.328 14.949 -4.798 -1.872 -0.199 O2B 80J 19 80J O2G O7 O 0 1 N N N -18.805 2.833 13.812 -6.158 2.686 0.384 O2G 80J 20 80J "O3'" O8 O 0 1 N N N -11.164 2.337 19.869 3.478 -3.686 -0.588 "O3'" 80J 21 80J O3A O9 O 0 1 N N N -16.152 2.967 15.721 -2.591 -0.474 0.101 O3A 80J 22 80J O3B O10 O 0 1 N N N -16.397 3.511 13.138 -4.800 0.710 -0.694 O3B 80J 23 80J O3G O11 O 0 1 N N N -18.446 4.766 12.264 -6.415 2.159 -2.179 O3G 80J 24 80J "O4'" O12 O 0 1 N N N -10.996 2.567 16.384 2.679 -0.185 -0.585 "O4'" 80J 25 80J "O5'" O13 O 0 1 N N N -13.694 1.965 16.214 -0.047 -1.136 0.085 "O5'" 80J 26 80J PA P1 P 0 1 N N N -15.274 1.585 15.950 -1.401 -1.143 0.955 PA 80J 27 80J PB P2 P 0 1 N N N -15.851 4.082 14.562 -4.194 -0.448 0.247 PB 80J 28 80J PG P3 P 0 1 N N N -17.964 3.398 12.692 -6.194 1.515 -0.720 PG 80J 29 80J H1 H1 H 0 1 N N N -9.396 1.739 17.219 3.892 -0.017 -2.265 H1 80J 30 80J H2 H2 H 0 1 N N N -10.063 4.675 17.783 5.521 -1.428 -0.296 H2 80J 31 80J H3 H3 H 0 1 N N N -11.977 4.042 18.868 3.708 -2.280 0.931 H3 80J 32 80J H4 H4 H 0 1 N N N -11.892 1.326 17.961 1.891 -1.888 -1.513 H4 80J 33 80J H5 H5 H 0 1 N N N -8.827 5.596 13.415 6.645 3.522 -1.470 H5 80J 34 80J H6 H6 H 0 1 N N N -13.373 3.820 17.007 0.992 -2.820 0.680 H6 80J 35 80J H7 H7 H 0 1 N N N -14.006 2.576 18.138 1.486 -1.298 1.461 H7 80J 36 80J H8 H8 H 0 1 N N N -10.267 4.789 15.288 5.297 1.745 -2.480 H8 80J 37 80J H9 H9 H 0 1 N N N -5.656 3.955 12.439 7.476 4.490 0.599 H9 80J 38 80J H10 H10 H 0 1 N N N -6.739 5.256 12.074 7.121 3.853 2.112 H10 80J 39 80J H11 H11 H 0 1 N N N -16.253 0.112 16.941 -0.934 0.623 2.161 H11 80J 40 80J H12 H12 H 0 1 N N N -15.990 6.055 15.013 -4.598 -2.115 -1.113 H12 80J 41 80J H13 H13 H 0 1 N N N -19.160 1.992 13.549 -5.452 3.333 0.248 H13 80J 42 80J H14 H14 H 0 1 N N N -10.771 2.870 20.550 4.296 -4.183 -0.445 H14 80J 43 80J H15 H15 H 0 1 N N N -18.654 4.753 11.337 -7.237 2.660 -2.268 H15 80J 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 80J O1G PG DOUB N N 1 80J O3G PG SING N N 2 80J N4 C4 SING N N 3 80J PG O3B SING N N 4 80J PG O2G SING N N 5 80J O3B PB SING N N 6 80J C4 C5 SING N N 7 80J C4 N3 DOUB N N 8 80J C5 C6 DOUB N N 9 80J O1B PB DOUB N N 10 80J N3 C2 SING N N 11 80J PB O2B SING N N 12 80J PB O3A SING N N 13 80J O1A PA DOUB N N 14 80J C6 N1 SING N N 15 80J C2 N1 SING N N 16 80J C2 O2 DOUB N N 17 80J O3A PA SING N N 18 80J N1 "C1'" SING N N 19 80J PA "O5'" SING N N 20 80J PA O2A SING N N 21 80J "O5'" "C5'" SING N N 22 80J "O4'" "C1'" SING N N 23 80J "O4'" "C4'" SING N N 24 80J "C1'" "C2'" SING N N 25 80J "C5'" "C4'" SING N N 26 80J "C4'" "C3'" SING N N 27 80J "C2'" "C3'" SING N N 28 80J "C2'" F2 SING N N 29 80J "C3'" "O3'" SING N N 30 80J "C1'" H1 SING N N 31 80J "C2'" H2 SING N N 32 80J "C3'" H3 SING N N 33 80J "C4'" H4 SING N N 34 80J C5 H5 SING N N 35 80J "C5'" H6 SING N N 36 80J "C5'" H7 SING N N 37 80J C6 H8 SING N N 38 80J N4 H9 SING N N 39 80J N4 H10 SING N N 40 80J O2A H11 SING N N 41 80J O2B H12 SING N N 42 80J O2G H13 SING N N 43 80J "O3'" H14 SING N N 44 80J O3G H15 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 80J SMILES ACDLabs 12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC1OC(N2C=CC(N)=NC2=O)C(F)C1O" 80J InChI InChI 1.06 "InChI=1S/C9H15FN3O13P3/c10-6-7(14)4(24-8(6)13-2-1-5(11)12-9(13)15)3-23-28(19,20)26-29(21,22)25-27(16,17)18/h1-2,4,6-8,14H,3H2,(H,19,20)(H,21,22)(H2,11,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1" 80J InChIKey InChI 1.06 YKEIUAOIVAXJRI-XVFCMESISA-N 80J SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]2F" 80J SMILES CACTVS 3.385 "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]2F" 80J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)F" 80J SMILES "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)N=C1N)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 80J "SYSTEMATIC NAME" ACDLabs 12.01 ;2'-deoxy-2'-fluorocytidine 5'-(tetrahydrogen triphosphate) ; 80J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(2~{R},3~{R},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-4-fluoranyl-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 80J "Create component" 2021-08-24 RCSB 80J "Initial release" 2023-05-24 RCSB #