data_81D # _chem_comp.id 81D _chem_comp.name "(S)-3-(Aminomethyl)-4-chloro-7-(2-hydroxyethoxy)benzo[c][1,2]oxaborol-1(3H)-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H24 B Cl N6 O10 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;[(1R,5S,6R,8R,9'S)-9'-(aminomethyl)-8-(6-aminopurin-9-yl)-2'-chloranyl-5'-(2-hydroxyethyloxy)spiro[2,4,7-trioxa-3-boranuidabicyclo[3.3.0]octane-3,7'-8-oxa-7-boranuidabicyclo[4.3.0]nona-1,3,5-triene]-6-yl]methyl dihydrogen phosphate ; _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2021-09-21 _chem_comp.pdbx_modified_date 2023-01-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 585.677 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 81D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7PQK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 81D C4 C1 C 0 1 Y N N 19.618 6.376 92.846 -1.021 3.283 0.472 C4 81D 1 81D C6 C2 C 0 1 Y N N 20.897 7.523 94.485 -1.398 5.565 1.152 C6 81D 2 81D C8 C3 C 0 1 Y N N 19.410 7.909 91.317 -2.928 2.353 1.076 C8 81D 3 81D C2 C4 C 0 1 Y N N 20.124 5.349 94.802 0.580 4.902 0.164 C2 81D 4 81D C5 C5 C 0 1 Y N N 20.291 7.528 93.229 -1.867 4.244 1.049 C5 81D 5 81D N1 N1 N 0 1 Y N N 20.832 6.397 95.246 -0.179 5.840 0.700 N1 81D 6 81D O1 O1 O 0 1 N N N 14.419 6.653 88.428 1.952 -1.597 1.705 O1 81D 7 81D O3P O2 O 0 1 N N N 21.782 4.449 85.946 -5.990 -2.963 0.704 O3P 81D 8 81D P P1 P 0 1 N N N 22.353 4.813 87.320 -5.334 -3.302 -0.578 P 81D 9 81D O1P O3 O 0 1 N N N 22.953 6.219 87.230 -4.927 -4.860 -0.577 O1P 81D 10 81D O2P O4 O 0 1 N N N 23.277 3.826 87.851 -6.350 -3.013 -1.793 O2P 81D 11 81D "O5'" O5 O 0 1 N N N 21.163 4.944 88.345 -4.011 -2.402 -0.759 "O5'" 81D 12 81D "C5'" C6 C 0 1 N N N 20.241 6.015 88.291 -2.964 -2.354 0.212 "C5'" 81D 13 81D "C4'" C7 C 0 1 N N R 18.854 5.549 88.623 -1.864 -1.407 -0.271 "C4'" 81D 14 81D "C3'" C8 C 0 1 N N S 17.771 6.630 88.702 -0.676 -1.444 0.707 "C3'" 81D 15 81D "O3'" O6 O 0 1 N N N 16.731 6.465 87.756 0.537 -1.690 -0.044 "O3'" 81D 16 81D "O4'" O7 O 0 1 N N N 18.913 4.910 89.944 -2.357 -0.058 -0.297 "O4'" 81D 17 81D "C1'" C9 C 0 1 N N R 18.200 5.679 90.875 -1.243 0.803 0.014 "C1'" 81D 18 81D "C2'" C10 C 0 1 N N R 17.138 6.428 90.072 -0.486 0.046 1.132 "C2'" 81D 19 81D "O2'" O8 O 0 1 N N N 16.024 5.571 89.792 0.927 0.264 0.957 "O2'" 81D 20 81D B B1 B -1 1 N N N 15.625 5.700 88.497 1.486 -0.932 0.599 B 81D 21 81D C12 C11 C 0 1 Y N N 14.969 4.454 87.714 2.716 -0.708 -0.328 C12 81D 22 81D C16 C12 C 0 1 Y N N 15.549 3.279 87.267 2.973 0.139 -1.389 C16 81D 23 81D O35 O9 O 0 1 N N N 16.889 3.147 87.317 2.022 1.013 -1.810 O35 81D 24 81D C36 C13 C 0 1 N N N 17.593 2.055 86.741 2.359 1.857 -2.913 C36 81D 25 81D C15 C14 C 0 1 Y N N 14.720 2.280 86.707 4.208 0.093 -2.024 C15 81D 26 81D C14 C15 C 0 1 Y N N 13.376 2.442 86.616 5.173 -0.797 -1.594 C14 81D 27 81D C10 C16 C 0 1 N N S 13.169 5.946 88.234 3.086 -2.362 1.258 C10 81D 28 81D C33 C17 C 0 1 N N N 12.468 5.744 89.541 4.109 -2.493 2.389 C33 81D 29 81D N34 N2 N 0 1 N N N 13.350 5.058 90.538 3.540 -3.307 3.471 N34 81D 30 81D C11 C18 C 0 1 Y N N 13.614 4.596 87.621 3.688 -1.600 0.101 C11 81D 31 81D C13 C19 C 0 1 Y N N 12.770 3.605 87.058 4.913 -1.645 -0.530 C13 81D 32 81D CL CL1 CL 0 0 N N N 11.107 3.871 86.882 6.128 -2.762 0.009 CL 81D 33 81D N9 N3 N 0 1 Y N N 19.072 6.623 91.629 -1.717 2.100 0.502 N9 81D 34 81D N7 N4 N 0 1 Y N N 20.144 8.476 92.218 -3.016 3.612 1.391 N7 81D 35 81D N6 N5 N 0 1 N N N 21.568 8.610 94.944 -2.186 6.556 1.711 N6 81D 36 81D N3 N6 N 0 1 Y N N 19.532 5.248 93.603 0.182 3.652 0.047 N3 81D 37 81D C37 C20 C 0 1 N N N 19.064 2.398 86.617 1.173 2.766 -3.241 C37 81D 38 81D O37 O10 O 0 1 N N N 19.309 3.519 85.804 0.934 3.652 -2.146 O37 81D 39 81D H81 H1 H 0 1 N N N 19.096 8.403 90.409 -3.700 1.617 1.243 H81 81D 40 81D H21 H2 H 0 1 N N N 20.021 4.508 95.472 1.564 5.169 -0.192 H21 81D 41 81D H1 H3 H 0 1 N N N 22.841 6.556 86.349 -4.492 -5.153 -1.390 H1 81D 42 81D H2 H4 H 0 1 N N N 23.365 3.110 87.233 -7.171 -3.522 -1.749 H2 81D 43 81D "H5'2" H5 H 0 0 N N N 20.544 6.787 89.014 -3.364 -1.993 1.160 "H5'2" 81D 44 81D "H5'1" H6 H 0 0 N N N 20.244 6.441 87.277 -2.550 -3.353 0.350 "H5'1" 81D 45 81D "H4'1" H7 H 0 0 N N N 18.544 4.804 87.876 -1.533 -1.702 -1.267 "H4'1" 81D 46 81D "H3'1" H8 H 0 0 N N N 18.228 7.628 88.638 -0.827 -2.123 1.546 "H3'1" 81D 47 81D "H1'1" H9 H 0 0 N N N 17.689 5.021 91.593 -0.606 0.934 -0.860 "H1'1" 81D 48 81D "H2'1" H10 H 0 0 N N N 16.856 7.380 90.545 -0.852 0.268 2.135 "H2'1" 81D 49 81D H362 H11 H 0 0 N N N 17.183 1.842 85.743 3.223 2.468 -2.652 H362 81D 50 81D H361 H12 H 0 0 N N N 17.478 1.168 87.382 2.597 1.242 -3.781 H361 81D 51 81D H151 H13 H 0 0 N N N 15.167 1.367 86.343 4.413 0.753 -2.853 H151 81D 52 81D H141 H14 H 0 0 N N N 12.771 1.653 86.193 6.132 -0.832 -2.089 H141 81D 53 81D H3 H15 H 0 1 N N N 12.517 6.479 87.526 2.764 -3.350 0.929 H3 81D 54 81D H332 H16 H 0 0 N N N 12.171 6.724 89.942 5.011 -2.973 2.009 H332 81D 55 81D H331 H17 H 0 0 N N N 11.572 5.129 89.374 4.357 -1.503 2.771 H331 81D 56 81D H341 H18 H 0 0 N N N 12.853 4.939 91.397 4.197 -3.409 4.231 H341 81D 57 81D H342 H19 H 0 0 N N N 13.621 4.163 90.183 2.668 -2.918 3.797 H342 81D 58 81D H62 H21 H 0 1 N N N 21.948 8.411 95.847 -1.850 7.463 1.776 H62 81D 59 81D H61 H22 H 0 1 N N N 22.310 8.835 94.312 -3.074 6.342 2.037 H61 81D 60 81D H5 H23 H 0 1 N N N 19.589 1.533 86.185 1.396 3.346 -4.137 H5 81D 61 81D H6 H24 H 0 1 N N N 19.460 2.603 87.622 0.286 2.156 -3.416 H6 81D 62 81D H7 H25 H 0 1 N N N 20.212 3.794 85.907 0.194 4.259 -2.285 H7 81D 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 81D O37 C37 SING N N 1 81D O3P P DOUB N N 2 81D C14 C15 DOUB Y N 3 81D C14 C13 SING Y N 4 81D C37 C36 SING N N 5 81D C15 C16 SING Y N 6 81D C36 O35 SING N N 7 81D CL C13 SING N N 8 81D C13 C11 DOUB Y N 9 81D O1P P SING N N 10 81D C16 O35 SING N N 11 81D C16 C12 DOUB Y N 12 81D P O2P SING N N 13 81D P "O5'" SING N N 14 81D C11 C12 SING Y N 15 81D C11 C10 SING N N 16 81D C12 B SING N N 17 81D "O3'" B SING N N 18 81D "O3'" "C3'" SING N N 19 81D C10 O1 SING N N 20 81D C10 C33 SING N N 21 81D "C5'" "O5'" SING N N 22 81D "C5'" "C4'" SING N N 23 81D O1 B SING N N 24 81D B "O2'" SING N N 25 81D "C4'" "C3'" SING N N 26 81D "C4'" "O4'" SING N N 27 81D "C3'" "C2'" SING N N 28 81D C33 N34 SING N N 29 81D "O2'" "C2'" SING N N 30 81D "O4'" "C1'" SING N N 31 81D "C2'" "C1'" SING N N 32 81D "C1'" N9 SING N N 33 81D C8 N9 SING Y N 34 81D C8 N7 DOUB Y N 35 81D N9 C4 SING Y N 36 81D N7 C5 SING Y N 37 81D C4 C5 DOUB Y N 38 81D C4 N3 SING Y N 39 81D C5 C6 SING Y N 40 81D N3 C2 DOUB Y N 41 81D C6 N6 SING N N 42 81D C6 N1 DOUB Y N 43 81D C2 N1 SING Y N 44 81D C8 H81 SING N N 45 81D C2 H21 SING N N 46 81D O1P H1 SING N N 47 81D O2P H2 SING N N 48 81D "C5'" "H5'2" SING N N 49 81D "C5'" "H5'1" SING N N 50 81D "C4'" "H4'1" SING N N 51 81D "C3'" "H3'1" SING N N 52 81D "C1'" "H1'1" SING N N 53 81D "C2'" "H2'1" SING N N 54 81D C36 H362 SING N N 55 81D C36 H361 SING N N 56 81D C15 H151 SING N N 57 81D C14 H141 SING N N 58 81D C10 H3 SING N N 59 81D C33 H332 SING N N 60 81D C33 H331 SING N N 61 81D N34 H341 SING N N 62 81D N34 H342 SING N N 63 81D N6 H62 SING N N 64 81D N6 H61 SING N N 65 81D C37 H5 SING N N 66 81D C37 H6 SING N N 67 81D O37 H7 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 81D InChI InChI 1.06 "InChI=1S/C20H24BClN6O10P/c22-9-1-2-10(33-4-3-29)14-13(9)11(5-23)36-21(14)37-16-12(6-34-39(30,31)32)35-20(17(16)38-21)28-8-27-15-18(24)25-7-26-19(15)28/h1-2,7-8,11-12,16-17,20,29H,3-6,23H2,(H2,24,25,26)(H2,30,31,32)/q-1/t11-,12-,16-,17-,20-,21+/m1/s1" 81D InChIKey InChI 1.06 YICHWMJUJYFTAX-RIMGRJFKSA-N 81D SMILES_CANONICAL CACTVS 3.385 "NC[C@H]1O[B-]2(O[C@@H]3[C@@H](CO[P](O)(O)=O)O[C@H]([C@@H]3O2)n4cnc5c(N)ncnc45)c6c(OCCO)ccc(Cl)c16" 81D SMILES CACTVS 3.385 "NC[CH]1O[B-]2(O[CH]3[CH](CO[P](O)(O)=O)O[CH]([CH]3O2)n4cnc5c(N)ncnc45)c6c(OCCO)ccc(Cl)c16" 81D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[B-]12(c3c(ccc(c3[C@H](O1)CN)Cl)OCCO)O[C@@H]4[C@H](O[C@H]([C@@H]4O2)n5cnc6c5ncnc6N)COP(=O)(O)O" 81D SMILES "OpenEye OEToolkits" 2.0.7 "[B-]12(c3c(ccc(c3C(O1)CN)Cl)OCCO)OC4C(OC(C4O2)n5cnc6c5ncnc6N)COP(=O)(O)O" # _pdbx_chem_comp_identifier.comp_id 81D _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier ;[(1~{R},5~{S},6~{R},8~{R},9'~{S})-9'-(aminomethyl)-8-(6-aminopurin-9-yl)-2'-chloranyl-5'-(2-hydroxyethyloxy)spiro[2,4,7-trioxa-3-boranuidabicyclo[3.3.0]octane-3,7'-8-oxa-7-boranuidabicyclo[4.3.0]nona-1,3,5-triene]-6-yl]methyl dihydrogen phosphate ; # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 81D _pdbx_chem_comp_synonyms.name ;[(1R,5S,6R,8R,9'S)-9'-(aminomethyl)-8-(6-aminopurin-9-yl)-2'-chloranyl-5'-(2-hydroxyethyloxy)spiro[2,4,7-trioxa-3-boranuidabicyclo[3.3.0]octane-3,7'-8-oxa-7-boranuidabicyclo[4.3.0]nona-1,3,5-triene]-6-yl]methyl dihydrogen phosphate ; _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 81D "Create component" 2021-09-21 PDBE 81D "Modify descriptor" 2022-08-22 RCSB 81D "Initial release" 2023-01-18 RCSB #