data_827 # _chem_comp.id 827 _chem_comp.name "(1R,2S,3S,4R,6S)-4,6-diamino-3-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-2-hydroxycyclohexyl 2-amino-2-deoxy-alpha-D-glucopyranoside" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H38 N4 O10" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-12-15 _chem_comp.pdbx_modified_date 2017-10-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 482.526 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5U19 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 827 C13 C1 C 0 1 N N S -4.508 -18.085 17.724 -2.694 1.095 -0.266 C13 827 1 827 C15 C2 C 0 1 N N R -2.295 -19.122 17.570 -4.652 -0.182 -0.804 C15 827 2 827 C20 C3 C 0 1 N N R -2.717 -17.441 19.328 -4.827 1.610 0.925 C20 827 3 827 C22 C4 C 0 1 N N R -4.168 -17.617 19.138 -3.535 2.210 0.361 C22 827 4 827 C24 C5 C 0 1 N N S -4.759 -17.553 14.503 -1.494 -2.091 1.096 C24 827 5 827 C02 C6 C 0 1 N N R -7.280 -10.804 16.128 4.641 1.422 -1.204 C02 827 6 827 C04 C7 C 0 1 N N N -7.485 -12.281 16.570 3.281 0.925 -1.703 C04 827 7 827 C06 C8 C 0 1 N N R -7.538 -13.045 14.296 3.458 -1.088 -0.411 C06 827 8 827 C11 C9 C 0 1 N N R -5.168 -16.933 15.819 -1.321 -0.776 0.332 C11 827 9 827 O17 O1 O 0 1 N N N -2.214 -21.501 17.612 -4.557 -1.943 -2.457 O17 827 10 827 C18 C10 C 0 1 N N S -2.016 -18.755 19.037 -5.571 0.882 -0.199 C18 827 11 827 C27 C11 C 0 1 N N R -5.921 -15.688 13.239 0.967 -2.496 0.957 C27 827 12 827 C09 C12 C 0 1 N N S -5.359 -15.430 15.693 0.060 -0.191 0.632 C09 827 13 827 C31 C13 C 0 1 N N R -6.808 -10.639 14.742 4.900 0.857 0.196 C31 827 14 827 C01 C14 C 0 1 N N N -6.298 -10.247 17.198 4.637 2.951 -1.148 C01 827 15 827 C16 C15 C 0 1 N N N -1.547 -20.335 17.146 -5.367 -0.873 -1.967 C16 827 16 827 O14 O2 O 0 1 N N N -3.734 -19.336 17.370 -3.457 0.439 -1.281 O14 827 17 827 O12 O3 O 0 1 N N N -4.145 -17.136 16.811 -2.330 0.149 0.742 O12 827 18 827 C26 C16 C 0 1 N N N -5.749 -17.190 13.393 -0.414 -3.082 0.658 C26 827 19 827 C08 C17 C 0 1 N N S -6.306 -15.028 14.559 1.140 -1.182 0.193 C08 827 20 827 O10 O4 O 0 1 N N N -5.843 -14.956 16.937 0.223 1.037 -0.081 O10 827 21 827 O07 O5 O 0 1 N N N -6.251 -13.592 14.428 2.431 -0.635 0.474 O07 827 22 827 C29 C18 C 0 1 N N R -7.437 -11.587 13.774 4.825 -0.672 0.139 C29 827 23 827 O05 O6 O 0 1 N N N -8.217 -13.068 15.573 3.268 -0.504 -1.701 O05 827 24 827 O03 O7 O 0 1 N N N -8.517 -10.156 16.293 5.666 0.979 -2.096 O03 827 25 827 N32 N1 N 0 1 N N N -7.191 -9.313 14.156 6.234 1.269 0.652 N32 827 26 827 C33 C19 C 0 1 N N N -6.321 -8.230 14.636 6.307 1.285 2.119 C33 827 27 827 O30 O8 O 0 1 N N N -6.694 -11.560 12.575 4.994 -1.207 1.454 O30 827 28 827 N28 N2 N 0 1 N N N -6.939 -15.448 12.207 2.004 -3.448 0.536 N28 827 29 827 N25 N3 N 0 1 N N N -4.707 -18.986 14.644 -2.821 -2.653 0.808 N25 827 30 827 N23 N4 N 0 1 N N N -4.883 -16.385 19.442 -2.776 2.847 1.446 N23 827 31 827 O21 O9 O 0 1 N N N -2.444 -16.984 20.688 -5.651 2.654 1.447 O21 827 32 827 O19 O10 O 0 1 N N N -0.598 -18.712 19.335 -6.742 0.256 0.331 O19 827 33 827 H1 H1 H 0 1 N N N -5.585 -18.300 17.669 -1.794 1.522 -0.706 H1 827 34 827 H2 H2 H 0 1 N N N -1.973 -18.277 16.944 -4.400 -0.920 -0.043 H2 827 35 827 H3 H3 H 0 1 N N N -2.352 -16.688 18.614 -4.585 0.904 1.720 H3 827 36 827 H4 H4 H 0 1 N N N -4.511 -18.396 19.834 -3.780 2.953 -0.398 H4 827 37 827 H5 H5 H 0 1 N N N -3.766 -17.171 14.225 -1.403 -1.904 2.166 H5 827 38 827 H6 H6 H 0 1 N N N -8.051 -12.292 17.513 2.495 1.296 -1.045 H6 827 39 827 H7 H7 H 0 1 N N N -6.499 -12.742 16.729 3.110 1.289 -2.716 H7 827 40 827 H8 H8 H 0 1 N N N -8.119 -13.627 13.565 3.414 -2.174 -0.493 H8 827 41 827 H9 H9 H 0 1 N N N -6.113 -17.387 16.152 -1.412 -0.963 -0.738 H9 827 42 827 H10 H10 H 0 1 N N N -1.732 -22.273 17.338 -4.949 -2.427 -3.196 H10 827 43 827 H11 H11 H 0 1 N N N -2.482 -19.529 19.665 -5.857 1.598 -0.970 H11 827 44 827 H12 H12 H 0 1 N N N -4.964 -15.261 12.905 1.058 -2.310 2.027 H12 827 45 827 H13 H13 H 0 1 N N N -4.377 -14.979 15.488 0.152 -0.004 1.702 H13 827 46 827 H14 H14 H 0 1 N N N -5.714 -10.751 14.706 4.146 1.234 0.886 H14 827 47 827 H15 H15 H 0 1 N N N -6.719 -10.407 18.202 4.449 3.351 -2.144 H15 827 48 827 H16 H16 H 0 1 N N N -5.333 -10.770 17.118 3.854 3.287 -0.468 H16 827 49 827 H17 H17 H 0 1 N N N -6.146 -9.170 17.031 5.604 3.303 -0.791 H17 827 50 827 H18 H18 H 0 1 N N N -1.488 -20.362 16.048 -6.323 -1.269 -1.622 H18 827 51 827 H19 H19 H 0 1 N N N -0.531 -20.303 17.567 -5.541 -0.153 -2.766 H19 827 52 827 H20 H20 H 0 1 N N N -6.726 -17.635 13.632 -0.538 -4.018 1.202 H20 827 53 827 H21 H21 H 0 1 N N N -5.381 -17.603 12.442 -0.506 -3.269 -0.412 H21 827 54 827 H22 H22 H 0 1 N N N -7.327 -15.340 14.826 1.049 -1.369 -0.877 H22 827 55 827 H23 H23 H 0 1 N N N -5.245 -15.213 17.629 1.033 1.515 0.139 H23 827 56 827 H24 H24 H 0 1 N N N -8.461 -11.239 13.572 5.611 -1.051 -0.513 H24 827 57 827 H25 H25 H 0 1 N N N -8.816 -10.266 17.188 5.562 1.296 -3.003 H25 827 58 827 H26 H26 H 0 1 N N N -8.135 -9.107 14.412 6.487 2.167 0.268 H26 827 59 827 H28 H28 H 0 1 N N N -6.636 -7.278 14.183 5.572 1.987 2.512 H28 827 60 827 H29 H29 H 0 1 N N N -6.396 -8.157 15.731 6.099 0.286 2.504 H29 827 61 827 H30 H30 H 0 1 N N N -5.280 -8.444 14.353 7.306 1.593 2.430 H30 827 62 827 H31 H31 H 0 1 N N N -6.635 -10.666 12.259 4.952 -2.172 1.494 H31 827 63 827 H32 H32 H 0 1 N N N -7.069 -14.464 12.089 1.911 -4.325 1.027 H32 827 64 827 H33 H33 H 0 1 N N N -6.638 -15.851 11.342 1.982 -3.588 -0.463 H33 827 65 827 H35 H35 H 0 1 N N N -4.061 -19.227 15.368 -2.919 -3.572 1.212 H35 827 66 827 H36 H36 H 0 1 N N N -5.616 -19.331 14.879 -3.552 -2.036 1.129 H36 827 67 827 H38 H38 H 0 1 N N N -4.655 -16.086 20.369 -1.916 3.246 1.099 H38 827 68 827 H39 H39 H 0 1 N N N -4.618 -15.676 18.789 -3.334 3.543 1.917 H39 827 69 827 H41 H41 H 0 1 N N N -2.894 -16.162 20.843 -6.489 2.345 1.818 H41 827 70 827 H42 H42 H 0 1 N N N -0.473 -18.482 20.248 -7.261 -0.228 -0.326 H42 827 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 827 N28 C27 SING N N 1 827 O30 C29 SING N N 2 827 C27 C26 SING N N 3 827 C27 C08 SING N N 4 827 C26 C24 SING N N 5 827 C29 C06 SING N N 6 827 C29 C31 SING N N 7 827 N32 C33 SING N N 8 827 N32 C31 SING N N 9 827 C06 O07 SING N N 10 827 C06 O05 SING N N 11 827 O07 C08 SING N N 12 827 C24 N25 SING N N 13 827 C24 C11 SING N N 14 827 C08 C09 SING N N 15 827 C31 C02 SING N N 16 827 O05 C04 SING N N 17 827 C09 C11 SING N N 18 827 C09 O10 SING N N 19 827 C11 O12 SING N N 20 827 C02 O03 SING N N 21 827 C02 C04 SING N N 22 827 C02 C01 SING N N 23 827 O12 C13 SING N N 24 827 C16 C15 SING N N 25 827 C16 O17 SING N N 26 827 O14 C15 SING N N 27 827 O14 C13 SING N N 28 827 C15 C18 SING N N 29 827 C13 C22 SING N N 30 827 C18 C20 SING N N 31 827 C18 O19 SING N N 32 827 C22 C20 SING N N 33 827 C22 N23 SING N N 34 827 C20 O21 SING N N 35 827 C13 H1 SING N N 36 827 C15 H2 SING N N 37 827 C20 H3 SING N N 38 827 C22 H4 SING N N 39 827 C24 H5 SING N N 40 827 C04 H6 SING N N 41 827 C04 H7 SING N N 42 827 C06 H8 SING N N 43 827 C11 H9 SING N N 44 827 O17 H10 SING N N 45 827 C18 H11 SING N N 46 827 C27 H12 SING N N 47 827 C09 H13 SING N N 48 827 C31 H14 SING N N 49 827 C01 H15 SING N N 50 827 C01 H16 SING N N 51 827 C01 H17 SING N N 52 827 C16 H18 SING N N 53 827 C16 H19 SING N N 54 827 C26 H20 SING N N 55 827 C26 H21 SING N N 56 827 C08 H22 SING N N 57 827 O10 H23 SING N N 58 827 C29 H24 SING N N 59 827 O03 H25 SING N N 60 827 N32 H26 SING N N 61 827 C33 H28 SING N N 62 827 C33 H29 SING N N 63 827 C33 H30 SING N N 64 827 O30 H31 SING N N 65 827 N28 H32 SING N N 66 827 N28 H33 SING N N 67 827 N25 H35 SING N N 68 827 N25 H36 SING N N 69 827 N23 H38 SING N N 70 827 N23 H39 SING N N 71 827 O21 H41 SING N N 72 827 O19 H42 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 827 SMILES ACDLabs 12.01 "C1(C(C(O)C(C(CO)O1)O)N)OC2C(N)CC(C(C2O)OC3OCC(O)(C)C(C3O)NC)N" 827 InChI InChI 1.03 "InChI=1S/C19H38N4O10/c1-19(29)5-30-18(13(28)16(19)23-2)33-15-7(21)3-6(20)14(12(15)27)32-17-9(22)11(26)10(25)8(4-24)31-17/h6-18,23-29H,3-5,20-22H2,1-2H3/t6-,7+,8+,9+,10+,11+,12-,13+,14+,15-,16+,17+,18+,19-/m0/s1" 827 InChIKey InChI 1.03 HFLKNINDVFJPQT-ZFAMMYHGSA-N 827 SMILES_CANONICAL CACTVS 3.385 "CN[C@@H]1[C@@H](O)[C@H](OC[C@]1(C)O)O[C@H]2[C@H](N)C[C@H](N)[C@@H](O[C@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3N)[C@@H]2O" 827 SMILES CACTVS 3.385 "CN[CH]1[CH](O)[CH](OC[C]1(C)O)O[CH]2[CH](N)C[CH](N)[CH](O[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3N)[CH]2O" 827 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@@]1(CO[C@@H]([C@@H]([C@H]1NC)O)O[C@H]2[C@@H](C[C@@H]([C@H]([C@@H]2O)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)N)N)N)O" 827 SMILES "OpenEye OEToolkits" 2.0.6 "CC1(COC(C(C1NC)O)OC2C(CC(C(C2O)OC3C(C(C(C(O3)CO)O)O)N)N)N)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 827 "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S,3S,4R,6S)-4,6-diamino-3-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-2-hydroxycyclohexyl 2-amino-2-deoxy-alpha-D-glucopyranoside" 827 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R},3~{R},4~{R},5~{R})-2-[(1~{S},2~{S},3~{R},4~{S},6~{R})-4,6-bis(azanyl)-3-[(2~{S},3~{R},4~{R},5~{S},6~{R})-3-azanyl-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-2-oxidanyl-cyclohexyl]oxy-5-methyl-4-(methylamino)oxane-3,5-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 827 "Create component" 2016-12-15 RCSB 827 "Modify value order" 2017-08-18 RCSB 827 "Initial release" 2017-11-01 RCSB #