data_82Q # _chem_comp.id 82Q _chem_comp.name "(2~{R},4~{R})-1-ethanoyl-~{N}-naphthalen-1-yl-4-phenyl-pyrrolidine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H22 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-09-28 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 358.433 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 82Q _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7PSQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 82Q C4 C1 C 0 1 Y N N N N N -15.971 -32.384 19.496 3.520 -0.735 2.462 C4 82Q 1 82Q C14 C2 C 0 1 N N R N N N -14.824 -26.721 14.806 -2.762 -0.196 0.334 C14 82Q 2 82Q C5 C3 C 0 1 Y N N N N N -15.278 -33.212 18.854 4.752 -0.937 1.920 C5 82Q 3 82Q C6 C4 C 0 1 Y N N N N N -14.968 -33.177 17.614 4.927 -0.859 0.528 C6 82Q 4 82Q C11 C5 C 0 1 Y N N N N N -15.428 -32.183 16.832 3.814 -0.571 -0.300 C11 82Q 5 82Q C7 C6 C 0 1 Y N N N N N -14.107 -34.272 17.000 6.188 -1.063 -0.060 C7 82Q 6 82Q C8 C7 C 0 1 Y N N N N N -13.805 -34.226 15.711 6.321 -0.981 -1.412 C8 82Q 7 82Q C9 C8 C 0 1 Y N N N N N -14.319 -33.076 14.831 5.226 -0.698 -2.226 C9 82Q 8 82Q C10 C9 C 0 1 Y N N N N N -15.071 -32.119 15.360 3.991 -0.489 -1.690 C10 82Q 9 82Q C12 C10 C 0 1 N N R N N N -14.921 -27.402 16.986 -0.861 0.779 -0.805 C12 82Q 10 82Q C13 C11 C 0 1 N N N N N N -13.970 -27.412 15.815 -1.720 -0.503 -0.774 C13 82Q 11 82Q N1 N1 N 0 1 N N N N N N -15.551 -29.898 17.466 1.438 -0.082 -0.506 N1 82Q 12 82Q N2 N2 N 0 1 N N N N N N -15.670 -26.131 16.894 -1.673 1.863 -0.232 N2 82Q 13 82Q C3 C12 C 0 1 Y N N N N N -16.793 -31.326 18.992 2.418 -0.458 1.659 C3 82Q 14 82Q C1 C13 C 0 1 N N N N N N -15.941 -28.553 16.970 0.387 0.581 0.015 C1 82Q 15 82Q C15 C14 C 0 1 Y N N N N N -13.988 -26.236 13.580 -4.033 -0.974 0.110 C15 82Q 16 82Q C16 C15 C 0 1 Y N N N N N -13.128 -27.055 13.019 -4.547 -1.764 1.121 C16 82Q 17 82Q C17 C16 C 0 1 Y N N N N N -12.313 -26.593 11.808 -5.712 -2.479 0.916 C17 82Q 18 82Q C18 C17 C 0 1 Y N N N N N -12.478 -25.375 11.332 -6.364 -2.402 -0.301 C18 82Q 19 82Q C19 C18 C 0 1 Y N N N N N -13.480 -24.423 11.985 -5.851 -1.611 -1.312 C19 82Q 20 82Q C2 C19 C 0 1 Y N N N N N -16.364 -30.939 17.477 2.549 -0.367 0.290 C2 82Q 21 82Q C20 C20 C 0 1 Y N N N N N -14.179 -24.821 13.029 -4.689 -0.893 -1.104 C20 82Q 22 82Q C21 C21 C 0 1 N N N N N N -15.498 -25.548 15.516 -2.997 1.322 0.128 C21 82Q 23 82Q C22 C22 C 0 1 N N N N N N -16.426 -25.575 17.981 -1.274 3.139 -0.063 C22 82Q 24 82Q C23 C23 C 0 1 N N N N N N -17.130 -24.234 17.741 -2.215 4.149 0.540 C23 82Q 25 82Q O1 O1 O 0 1 N N N N N N -17.052 -28.363 16.598 0.446 1.018 1.145 O1 82Q 26 82Q O2 O2 O 0 1 N N N N N N -16.458 -26.169 19.005 -0.157 3.474 -0.397 O2 82Q 27 82Q H1 H1 H 0 1 N N N N N N -15.943 -32.484 20.571 3.394 -0.797 3.533 H1 82Q 28 82Q H2 H2 H 0 1 N N N N N N -15.599 -27.414 14.448 -2.352 -0.397 1.323 H2 82Q 29 82Q H3 H3 H 0 1 N N N N N N -14.899 -34.053 19.416 5.595 -1.156 2.559 H3 82Q 30 82Q H4 H4 H 0 1 N N N N N N -13.744 -35.083 17.613 7.046 -1.283 0.557 H4 82Q 31 82Q H5 H5 H 0 1 N N N N N N -13.193 -35.002 15.276 7.291 -1.138 -1.862 H5 82Q 32 82Q H6 H6 H 0 1 N N N N N N -14.068 -33.046 13.781 5.359 -0.633 -3.295 H6 82Q 33 82Q H7 H7 H 0 1 N N N N N N -15.425 -31.303 14.748 3.151 -0.270 -2.332 H7 82Q 34 82Q H8 H8 H 0 1 N N N N N N -14.350 -27.436 17.926 -0.594 1.021 -1.834 H8 82Q 35 82Q H9 H9 H 0 1 N N N N N N -13.712 -28.435 15.504 -1.113 -1.367 -0.503 H9 82Q 36 82Q H10 H10 H 0 1 N N N N N N -13.049 -26.850 16.028 -2.212 -0.661 -1.733 H10 82Q 37 82Q H11 H11 H 0 1 N N N N N N -14.621 -30.022 17.811 1.423 -0.362 -1.435 H11 82Q 38 82Q H12 H12 H 0 1 N N N N N N -17.590 -30.851 19.545 1.450 -0.306 2.114 H12 82Q 39 82Q H13 H13 H 0 1 N N N N N N -12.996 -28.053 13.411 -4.037 -1.824 2.071 H13 82Q 40 82Q H14 H14 H 0 1 N N N N N N -11.604 -27.264 11.345 -6.113 -3.096 1.706 H14 82Q 41 82Q H15 H15 H 0 1 N N N N N N -11.903 -25.049 10.478 -7.275 -2.961 -0.462 H15 82Q 42 82Q H16 H16 H 0 1 N N N N N N -13.615 -23.426 11.592 -6.360 -1.552 -2.262 H16 82Q 43 82Q H17 H17 H 0 1 N N N N N N -14.885 -24.150 13.495 -4.288 -0.275 -1.894 H17 82Q 44 82Q H18 H18 H 0 1 N N N N N N -14.855 -24.656 15.529 -3.708 1.489 -0.681 H18 82Q 45 82Q H19 H19 H 0 1 N N N N N N -16.465 -25.296 15.057 -3.355 1.779 1.050 H19 82Q 46 82Q H20 H20 H 0 1 N N N N N N -17.656 -23.926 18.657 -3.164 3.667 0.774 H20 82Q 47 82Q H21 H21 H 0 1 N N N N N N -16.384 -23.471 17.472 -1.778 4.553 1.453 H21 82Q 48 82Q H22 H22 H 0 1 N N N N N N -17.855 -24.342 16.921 -2.384 4.958 -0.171 H22 82Q 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 82Q C18 C17 DOUB Y N 1 82Q C18 C19 SING Y N 2 82Q C17 C16 SING Y N 3 82Q C19 C20 DOUB Y N 4 82Q C16 C15 DOUB Y N 5 82Q C20 C15 SING Y N 6 82Q C15 C14 SING N N 7 82Q C14 C21 SING N N 8 82Q C14 C13 SING N N 9 82Q C9 C10 DOUB Y N 10 82Q C9 C8 SING Y N 11 82Q C10 C11 SING Y N 12 82Q C21 N2 SING N N 13 82Q C8 C7 DOUB Y N 14 82Q C13 C12 SING N N 15 82Q O1 C1 DOUB N N 16 82Q C11 C2 DOUB Y N 17 82Q C11 C6 SING Y N 18 82Q N2 C12 SING N N 19 82Q N2 C22 SING N N 20 82Q C1 C12 SING N N 21 82Q C1 N1 SING N N 22 82Q C7 C6 SING Y N 23 82Q N1 C2 SING N N 24 82Q C2 C3 SING Y N 25 82Q C6 C5 DOUB Y N 26 82Q C23 C22 SING N N 27 82Q C22 O2 DOUB N N 28 82Q C5 C4 SING Y N 29 82Q C3 C4 DOUB Y N 30 82Q C4 H1 SING N N 31 82Q C14 H2 SING N N 32 82Q C5 H3 SING N N 33 82Q C7 H4 SING N N 34 82Q C8 H5 SING N N 35 82Q C9 H6 SING N N 36 82Q C10 H7 SING N N 37 82Q C12 H8 SING N N 38 82Q C13 H9 SING N N 39 82Q C13 H10 SING N N 40 82Q N1 H11 SING N N 41 82Q C3 H12 SING N N 42 82Q C16 H13 SING N N 43 82Q C17 H14 SING N N 44 82Q C18 H15 SING N N 45 82Q C19 H16 SING N N 46 82Q C20 H17 SING N N 47 82Q C21 H18 SING N N 48 82Q C21 H19 SING N N 49 82Q C23 H20 SING N N 50 82Q C23 H21 SING N N 51 82Q C23 H22 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 82Q InChI InChI 1.06 "InChI=1S/C23H22N2O2/c1-16(26)25-15-19(17-8-3-2-4-9-17)14-22(25)23(27)24-21-13-7-11-18-10-5-6-12-20(18)21/h2-13,19,22H,14-15H2,1H3,(H,24,27)/t19-,22+/m0/s1" 82Q InChIKey InChI 1.06 HXZFWDRYUUGFOU-SIKLNZKXSA-N 82Q SMILES_CANONICAL CACTVS 3.385 "CC(=O)N1C[C@H](C[C@@H]1C(=O)Nc2cccc3ccccc23)c4ccccc4" 82Q SMILES CACTVS 3.385 "CC(=O)N1C[CH](C[CH]1C(=O)Nc2cccc3ccccc23)c4ccccc4" 82Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N1C[C@H](C[C@@H]1C(=O)Nc2cccc3c2cccc3)c4ccccc4" 82Q SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CC(CC1C(=O)Nc2cccc3c2cccc3)c4ccccc4" # _pdbx_chem_comp_identifier.comp_id 82Q _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},4~{R})-1-ethanoyl-~{N}-naphthalen-1-yl-4-phenyl-pyrrolidine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 82Q "Create component" 2021-09-28 PDBE 82Q "Modify descriptor" 2022-08-22 RCSB 82Q "Initial release" 2022-10-05 RCSB 82Q "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 82Q _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C23 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #