data_83F # _chem_comp.id 83F _chem_comp.name "tert-butyl-N-[(2S)-3-methyl-1-[(2S,4S)-4-methyl-2-[[(2S)-1-oxidanyl-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]pyrrolidin-1-yl]-1-oxidanylidene-butan-2-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H40 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "tert-butyl N-[(2S)-3-methyl-1-[(2S,4S)-4-methyl-2-[[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]pyrrolidin-1-yl]-1-oxidanylidene-butan-2-yl]carbamate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-09-30 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 468.587 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 83F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7PT8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 83F C1 C1 C 0 1 N N N N N N 25.019 4.724 -31.360 -0.248 5.414 1.163 C1 83F 1 83F C10 C2 C 0 1 N N N N N N 17.610 7.916 -25.617 -3.930 -4.245 -0.169 C10 83F 2 83F C11 C3 C 0 1 N N N N N N 16.927 5.692 -25.814 -5.409 -2.807 0.898 C11 83F 3 83F C12 C4 C 0 1 N N N N N N 21.307 3.329 -24.775 -4.680 1.318 -1.828 C12 83F 4 83F C13 C5 C 0 1 N N N N N N 22.834 5.980 -30.914 0.757 3.141 0.652 C13 83F 5 83F C14 C6 C 0 1 N N N N N N 20.466 6.302 -30.072 0.996 0.650 0.449 C14 83F 6 83F C15 C7 C 0 1 N N S N N N 20.318 7.595 -30.873 2.463 0.776 0.128 C15 83F 7 83F C16 C8 C 0 1 N N N N N N 20.134 7.495 -33.291 4.351 -0.764 0.119 C16 83F 8 83F C17 C9 C 0 1 N N N N N N 19.518 7.313 -35.679 6.302 -2.139 0.161 C17 83F 9 83F C18 C10 C 0 1 N N N N N N 18.208 7.204 -36.422 6.622 -1.776 1.613 C18 83F 10 83F C19 C11 C 0 1 N N N N N N 20.230 8.603 -36.021 7.073 -1.210 -0.779 C19 83F 11 83F C2 C12 C 0 1 N N S N N N 23.601 4.641 -30.853 -0.226 3.934 1.548 C2 83F 12 83F C20 C13 C 0 1 N N N N N N 20.397 6.117 -35.961 6.712 -3.588 -0.104 C20 83F 13 83F C21 C14 C 0 1 N N N N N N 19.633 8.681 -30.031 2.637 1.610 -1.143 C21 83F 14 83F C22 C15 C 0 1 N N N N N N 19.412 9.951 -30.847 4.127 1.738 -1.469 C22 83F 15 83F C23 C16 C 0 1 N N N N N N 20.412 8.996 -28.761 1.918 0.922 -2.306 C23 83F 16 83F C3 C17 C 0 1 N N N N N N 23.419 4.257 -29.376 -1.577 3.250 1.209 C3 83F 17 83F C4 C18 C 0 1 N N S N N N 21.939 4.589 -29.142 -1.175 1.775 1.002 C4 83F 18 83F C5 C19 C 0 1 N N N N N N 21.683 5.019 -27.703 -1.965 1.183 -0.137 C5 83F 19 83F C6 C20 C 0 1 N N S N N N 20.632 4.440 -25.565 -4.000 0.195 -1.042 C6 83F 20 83F C7 C21 C 0 1 N N N N N N 19.123 4.513 -25.287 -5.064 -0.754 -0.486 C7 83F 21 83F C8 C22 C 0 1 N N S N N N 18.434 5.686 -25.979 -4.381 -1.923 0.228 C8 83F 22 83F C9 C23 C 0 1 N N N N N N 18.846 7.059 -25.468 -3.691 -2.854 -0.796 C9 83F 23 83F N1 N1 N 0 1 N N N N N N 20.881 4.224 -26.990 -3.232 0.770 0.065 N1 83F 24 83F N2 N2 N 0 1 N N N N N N 16.532 6.932 -25.577 -5.136 -4.100 0.656 N2 83F 25 83F N3 N3 N 0 1 N N N N N N 21.661 5.696 -30.066 0.259 1.754 0.680 N3 83F 26 83F N4 N4 N 0 1 N N N N N N 19.583 7.287 -32.086 3.035 -0.557 -0.080 N4 83F 27 83F O1 O1 O 0 1 N N N N N N 22.187 6.046 -27.242 -1.461 1.080 -1.235 O1 83F 28 83F O2 O2 O 0 1 N N N N N N 16.192 4.715 -25.970 -6.344 -2.407 1.559 O2 83F 29 83F O3 O3 O 0 1 N N N N N N 21.147 3.513 -23.389 -5.644 1.967 -0.996 O3 83F 30 83F O4 O4 O 0 1 N N N N N N 19.502 5.844 -29.443 0.479 -0.446 0.499 O4 83F 31 83F O5 O5 O 0 1 N N N N N N 21.285 7.828 -33.461 5.065 0.155 0.471 O5 83F 32 83F O6 O6 O 0 1 N N N N N N 19.199 7.320 -34.234 4.877 -1.989 -0.072 O6 83F 33 83F H2 H1 H 0 1 N N N N N N 25.495 3.735 -31.284 -0.539 5.513 0.117 H2 83F 34 83F H3 H2 H 0 1 N N N N N N 25.014 5.048 -32.411 -0.966 5.943 1.790 H3 83F 35 83F H1 H3 H 0 1 N N N N N N 25.583 5.449 -30.755 0.744 5.842 1.306 H1 83F 36 83F H16 H4 H 0 1 N N N N N N 17.616 8.459 -26.574 -4.094 -4.988 -0.949 H16 83F 37 83F H15 H5 H 0 1 N N N N N N 17.523 8.634 -24.788 -3.081 -4.529 0.452 H15 83F 38 83F H21 H8 H 0 1 N N N N N N 23.435 6.805 -30.503 0.740 3.530 -0.366 H21 83F 39 83F H22 H9 H 0 1 N N N N N N 22.534 6.223 -31.944 1.767 3.190 1.060 H22 83F 40 83F H23 H10 H 0 1 N N N N N N 21.324 7.952 -31.139 2.975 1.266 0.956 H23 83F 41 83F H27 H11 H 0 1 N N N N N N 17.712 6.259 -36.155 6.073 -2.438 2.283 H27 83F 42 83F H25 H12 H 0 1 N N N N N N 17.559 8.049 -36.147 7.692 -1.888 1.788 H25 83F 43 83F H26 H13 H 0 1 N N N N N N 18.398 7.225 -37.505 6.330 -0.743 1.802 H26 83F 44 83F H30 H14 H 0 1 N N N N N N 21.179 8.657 -35.467 6.780 -0.177 -0.589 H30 83F 45 83F H28 H15 H 0 1 N N N N N N 20.434 8.634 -37.102 8.143 -1.322 -0.603 H28 83F 46 83F H29 H16 H 0 1 N N N N N N 19.595 9.457 -35.743 6.845 -1.468 -1.812 H29 83F 47 83F H4 H17 H 0 1 N N N N N N 23.055 3.909 -31.466 0.021 3.811 2.603 H4 83F 48 83F H31 H18 H 0 1 N N N N N N 21.344 6.219 -35.410 6.484 -3.847 -1.138 H31 83F 49 83F H32 H19 H 0 1 N N N N N N 19.882 5.200 -35.639 7.782 -3.701 0.071 H32 83F 50 83F H33 H20 H 0 1 N N N N N N 20.605 6.061 -37.040 6.163 -4.250 0.565 H33 83F 51 83F H34 H21 H 0 1 N N N N N N 18.646 8.298 -29.733 2.212 2.601 -0.989 H34 83F 52 83F H37 H22 H 0 1 N N N N N N 18.921 10.710 -30.220 4.552 0.747 -1.624 H37 83F 53 83F H35 H23 H 0 1 N N N N N N 20.382 10.336 -31.196 4.250 2.332 -2.375 H35 83F 54 83F H36 H24 H 0 1 N N N N N N 18.774 9.723 -31.714 4.639 2.228 -0.641 H36 83F 55 83F H40 H25 H 0 1 N N N N N N 19.886 9.776 -28.192 0.857 0.831 -2.074 H40 83F 56 83F H38 H26 H 0 1 N N N N N N 20.495 8.087 -28.147 2.042 1.516 -3.212 H38 83F 57 83F H39 H27 H 0 1 N N N N N N 21.418 9.352 -29.027 2.344 -0.069 -2.461 H39 83F 58 83F H6 H28 H 0 1 N N N N N N 23.620 3.188 -29.213 -2.277 3.347 2.039 H6 83F 59 83F H5 H29 H 0 1 N N N N N N 24.071 4.856 -28.724 -2.001 3.666 0.296 H5 83F 60 83F H7 H30 H 0 1 N N N N N N 21.319 3.714 -29.387 -1.360 1.208 1.915 H7 83F 61 83F H9 H31 H 0 1 N N N N N N 21.081 5.398 -25.264 -3.330 -0.356 -1.702 H9 83F 62 83F H11 H32 H 0 1 N N N N N N 18.973 4.612 -24.202 -5.697 -0.217 0.220 H11 83F 63 83F H10 H33 H 0 1 N N N N N N 18.658 3.580 -25.638 -5.674 -1.135 -1.305 H10 83F 64 83F H12 H34 H 0 1 N N N N N N 18.664 5.635 -27.053 -3.659 -1.556 0.957 H12 83F 65 83F H14 H35 H 0 1 N N N N N N 19.154 7.003 -24.413 -2.625 -2.635 -0.866 H14 83F 66 83F H13 H36 H 0 1 N N N N N N 19.673 7.464 -26.070 -4.168 -2.780 -1.774 H13 83F 67 83F H8 H37 H 0 1 N N N N N N 20.435 3.454 -27.446 -3.635 0.853 0.944 H8 83F 68 83F H17 H38 H 0 1 N N N N N N 15.580 7.174 -25.387 -5.667 -4.843 0.983 H17 83F 69 83F H24 H39 H 0 1 N N N N N N 18.657 6.916 -32.023 2.465 -1.290 -0.361 H24 83F 70 83F H18 H40 H 0 1 N N N N N N 20.862 2.365 -25.062 -3.931 2.042 -2.149 H18 83F 71 83F H19 H41 H 0 1 N Y N N N N 22.381 3.322 -25.013 -5.178 0.899 -2.703 H19 83F 72 83F H20 H42 H 0 1 N N N N N N 21.578 2.806 -22.923 -6.114 2.691 -1.430 H20 83F 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 83F C18 C17 SING N N 1 83F C19 C17 SING N N 2 83F C20 C17 SING N N 3 83F C17 O6 SING N N 4 83F O6 C16 SING N N 5 83F O5 C16 DOUB N N 6 83F C16 N4 SING N N 7 83F N4 C15 SING N N 8 83F C1 C2 SING N N 9 83F C13 C2 SING N N 10 83F C13 N3 SING N N 11 83F C15 C14 SING N N 12 83F C15 C21 SING N N 13 83F C2 C3 SING N N 14 83F C22 C21 SING N N 15 83F C14 N3 SING N N 16 83F C14 O4 DOUB N N 17 83F N3 C4 SING N N 18 83F C21 C23 SING N N 19 83F C3 C4 SING N N 20 83F C4 C5 SING N N 21 83F C5 O1 DOUB N N 22 83F C5 N1 SING N N 23 83F N1 C6 SING N N 24 83F C8 C11 SING N N 25 83F C8 C9 SING N N 26 83F C8 C7 SING N N 27 83F O2 C11 DOUB N N 28 83F C11 N2 SING N N 29 83F C10 N2 SING N N 30 83F C10 C9 SING N N 31 83F C6 C7 SING N N 32 83F C6 C12 SING N N 33 83F C12 O3 SING N N 34 83F C1 H2 SING N N 35 83F C1 H3 SING N N 36 83F C1 H1 SING N N 37 83F C10 H16 SING N N 38 83F C10 H15 SING N N 39 83F C13 H21 SING N N 40 83F C13 H22 SING N N 41 83F C15 H23 SING N N 42 83F C18 H27 SING N N 43 83F C18 H25 SING N N 44 83F C18 H26 SING N N 45 83F C19 H30 SING N N 46 83F C19 H28 SING N N 47 83F C19 H29 SING N N 48 83F C2 H4 SING N N 49 83F C20 H31 SING N N 50 83F C20 H32 SING N N 51 83F C20 H33 SING N N 52 83F C21 H34 SING N N 53 83F C22 H37 SING N N 54 83F C22 H35 SING N N 55 83F C22 H36 SING N N 56 83F C23 H40 SING N N 57 83F C23 H38 SING N N 58 83F C23 H39 SING N N 59 83F C3 H6 SING N N 60 83F C3 H5 SING N N 61 83F C4 H7 SING N N 62 83F C6 H9 SING N N 63 83F C7 H11 SING N N 64 83F C7 H10 SING N N 65 83F C8 H12 SING N N 66 83F C9 H14 SING N N 67 83F C9 H13 SING N N 68 83F N1 H8 SING N N 69 83F N2 H17 SING N N 70 83F N4 H24 SING N N 71 83F C12 H18 SING N N 72 83F C12 H19 SING N N 73 83F O3 H20 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 83F InChI InChI 1.06 "InChI=1S/C23H40N4O6/c1-13(2)18(26-22(32)33-23(4,5)6)21(31)27-11-14(3)9-17(27)20(30)25-16(12-28)10-15-7-8-24-19(15)29/h13-18,28H,7-12H2,1-6H3,(H,24,29)(H,25,30)(H,26,32)/t14-,15-,16-,17-,18-/m0/s1" 83F InChIKey InChI 1.06 CUINDADQQONHSA-ATIWLJMLSA-N 83F SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](NC(=O)OC(C)(C)C)C(=O)N1C[C@@H](C)C[C@H]1C(=O)N[C@H](CO)C[C@@H]2CCNC2=O" 83F SMILES CACTVS 3.385 "CC(C)[CH](NC(=O)OC(C)(C)C)C(=O)N1C[CH](C)C[CH]1C(=O)N[CH](CO)C[CH]2CCNC2=O" 83F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1C[C@H](N(C1)C(=O)[C@H](C(C)C)NC(=O)OC(C)(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)CO" 83F SMILES "OpenEye OEToolkits" 2.0.7 "CC1CC(N(C1)C(=O)C(C(C)C)NC(=O)OC(C)(C)C)C(=O)NC(CC2CCNC2=O)CO" # _pdbx_chem_comp_identifier.comp_id 83F _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{tert}-butyl ~{N}-[(2~{S})-3-methyl-1-[(2~{S},4~{S})-4-methyl-2-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]pyrrolidin-1-yl]-1-oxidanylidene-butan-2-yl]carbamate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 83F _pdbx_chem_comp_synonyms.name "tert-butyl N-[(2S)-3-methyl-1-[(2S,4S)-4-methyl-2-[[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]pyrrolidin-1-yl]-1-oxidanylidene-butan-2-yl]carbamate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type precursor # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 83F "Create component" 2021-10-04 PDBE 83F "Modify formula" 2021-10-04 PDBE 83F "Modify aromatic_flag" 2021-10-04 PDBE 83F "Modify descriptor" 2022-08-22 RCSB 83F "Initial release" 2023-05-03 RCSB 83F "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 83F _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C12 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #