data_83N # _chem_comp.id 83N _chem_comp.name "tert-butyl-N-[(2S)-1-[(2S,4S)-4-methoxy-2-[[(2S)-1-oxidanyl-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]pyrrolidin-1-yl]-3-methyl-1-oxidanylidene-butan-2-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H40 N4 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "tert-butyl-N-[(2S)-1-[(2S,4S)-4-methoxy-2-[[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]pyrrolidin-1-yl]-3-methyl-1-oxidanylidene-butan-2-yl]carbamate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-09-30 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 484.586 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 83N _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7PT9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 83N C1 C1 C 0 1 N N N N N N 25.775 3.788 -31.364 1.248 5.737 1.936 C1 83N 1 83N C10 C2 C 0 1 N N N N N N 17.699 7.784 -25.540 -4.127 -4.302 -0.008 C10 83N 2 83N C11 C3 C 0 1 N N N N N N 16.990 5.585 -25.808 -5.485 -2.783 1.107 C11 83N 3 83N C12 C4 C 0 1 N N N N N N 21.347 3.169 -24.781 -4.738 1.209 -1.806 C12 83N 4 83N C13 C5 C 0 1 N N N N N N 22.861 6.010 -30.858 1.095 2.697 0.862 C13 83N 5 83N C14 C6 C 0 1 N N N N N N 20.486 6.177 -30.044 0.868 0.394 -0.105 C14 83N 6 83N C15 C7 C 0 1 N N S N N N 20.312 7.498 -30.791 2.329 0.359 -0.474 C15 83N 7 83N C16 C8 C 0 1 N N N N N N 20.130 7.433 -33.223 4.184 -1.138 0.030 C16 83N 8 83N C17 C9 C 0 1 N N N N N N 19.491 7.350 -35.604 6.107 -2.465 0.521 C17 83N 9 83N C18 C10 C 0 1 N N N N N N 20.176 8.660 -35.920 6.471 -1.624 1.746 C18 83N 10 83N C19 C11 C 0 1 N N N N N N 18.152 7.256 -36.299 6.872 -1.948 -0.698 C19 83N 11 83N C2 C12 C 0 1 N N S N N N 23.646 4.705 -30.905 0.079 3.703 1.442 C2 83N 12 83N C20 C13 C 0 1 N N N N N N 20.377 6.172 -35.938 6.481 -3.926 0.776 C20 83N 13 83N C21 C14 C 0 1 N N N N N N 19.609 8.524 -29.885 2.487 0.687 -1.960 C21 83N 14 83N C22 C15 C 0 1 N N N N N N 20.437 8.856 -28.655 2.006 2.115 -2.221 C22 83N 15 83N C23 C16 C 0 1 N N N N N N 19.267 9.796 -30.649 3.961 0.565 -2.354 C23 83N 16 83N C3 C17 C 0 1 N N N N N N 23.483 4.182 -29.489 -1.264 3.239 0.818 C3 83N 17 83N C4 C18 C 0 1 N N S N N N 22.006 4.474 -29.185 -1.080 1.701 0.792 C4 83N 18 83N C5 C19 C 0 1 N N N N N N 21.797 4.837 -27.721 -1.955 1.087 -0.269 C5 83N 19 83N C6 C20 C 0 1 N N S N N N 20.704 4.287 -25.597 -4.061 0.100 -0.998 C6 83N 20 83N C7 C21 C 0 1 N N N N N N 19.194 4.374 -25.348 -5.129 -0.772 -0.335 C7 83N 21 83N C8 C22 C 0 1 N N S N N N 18.494 5.576 -25.989 -4.458 -1.956 0.364 C8 83N 22 83N C9 C23 C 0 1 N N N N N N 18.926 6.922 -25.423 -3.864 -2.934 -0.676 C9 83N 23 83N N1 N1 N 0 1 N N N N N N 20.974 4.059 -27.017 -3.210 0.698 0.034 N1 83N 24 83N N2 N2 N 0 1 N N N N N N 16.608 6.809 -25.522 -5.279 -4.091 0.876 N2 83N 25 83N N3 N3 N 0 1 N N N N N N 21.700 5.622 -30.033 0.343 1.497 0.465 N3 83N 26 83N N4 N4 N 0 1 N N N N N N 19.575 7.235 -32.012 2.867 -0.978 -0.208 N4 83N 27 83N O1 O1 O 0 1 N N N N N N 25.002 4.975 -31.241 0.395 5.034 1.030 O1 83N 28 83N O2 O2 O 0 1 N N N N N N 22.375 5.808 -27.229 -1.531 0.941 -1.396 O2 83N 29 83N O3 O3 O 0 1 N N N N N N 16.244 4.617 -25.992 -6.365 -2.332 1.808 O3 83N 30 83N O4 O4 O 0 1 N N N N N N 21.257 3.419 -23.398 -5.627 1.941 -0.960 O4 83N 31 83N O5 O5 O 0 1 N N N N N N 19.539 5.637 -29.467 0.165 -0.570 -0.320 O5 83N 32 83N O6 O6 O 0 1 N N N N N N 21.292 7.706 -33.413 4.925 -0.175 0.023 O6 83N 33 83N O7 O7 O 0 1 N N N N N N 19.190 7.303 -34.156 4.679 -2.366 0.274 O7 83N 34 83N H1 H1 H 0 1 N N N N N N 26.811 4.050 -31.624 1.440 6.738 1.551 H1 83N 35 83N H2 H2 H 0 1 N N N N N N 25.763 3.242 -30.409 0.763 5.808 2.909 H2 83N 36 83N H3 H3 H 0 1 N N N N N N 25.348 3.153 -32.154 2.191 5.199 2.037 H3 83N 37 83N H16 H4 H 0 1 N N N N N N 17.704 8.354 -26.481 -4.363 -5.051 -0.764 H16 83N 38 83N H15 H5 H 0 1 N N N N N N 17.622 8.479 -24.691 -3.258 -4.611 0.572 H15 83N 39 83N H21 H8 H 0 1 N N N N N N 23.443 6.813 -30.381 1.590 3.129 -0.007 H21 83N 40 83N H22 H9 H 0 1 N N N N N N 22.551 6.329 -31.864 1.835 2.436 1.619 H22 83N 41 83N H23 H10 H 0 1 N N N N N N 21.309 7.888 -31.043 2.872 1.094 0.120 H23 83N 42 83N H25 H11 H 0 1 N N N N N N 21.146 8.701 -35.402 5.925 -1.992 2.615 H25 83N 43 83N H26 H12 H 0 1 N N N N N N 20.336 8.737 -37.006 7.542 -1.697 1.932 H26 83N 44 83N H27 H13 H 0 1 N N N N N N 19.544 9.495 -35.582 6.204 -0.582 1.564 H27 83N 45 83N H30 H14 H 0 1 N N N N N N 17.538 8.128 -36.032 6.606 -0.906 -0.880 H30 83N 46 83N H28 H15 H 0 1 N N N N N N 18.305 7.235 -37.388 7.944 -2.021 -0.512 H28 83N 47 83N H29 H16 H 0 1 N N N N N N 17.639 6.336 -35.983 6.613 -2.547 -1.571 H29 83N 48 83N H4 H17 H 0 1 N N N N N N 23.182 4.011 -31.621 0.044 3.633 2.529 H4 83N 49 83N H31 H18 H 0 1 N N N N N N 21.339 6.276 -35.415 6.221 -4.525 -0.097 H31 83N 50 83N H32 H19 H 0 1 N N N N N N 19.885 5.241 -35.619 7.552 -4.000 0.962 H32 83N 51 83N H33 H20 H 0 1 N N N N N N 20.551 6.141 -37.024 5.935 -4.294 1.645 H33 83N 52 83N H34 H21 H 0 1 N N N N N N 18.665 8.074 -29.544 1.894 -0.011 -2.551 H34 83N 53 83N H35 H22 H 0 1 N N N N N N 19.899 9.590 -28.037 2.563 2.807 -1.591 H35 83N 54 83N H36 H23 H 0 1 N N N N N N 20.608 7.940 -28.070 2.167 2.367 -3.269 H36 83N 55 83N H37 H24 H 0 1 N N N N N N 21.404 9.278 -28.967 0.943 2.188 -1.990 H37 83N 56 83N H39 H25 H 0 1 N N N N N N 18.767 10.506 -29.974 4.304 -0.453 -2.168 H39 83N 57 83N H40 H26 H 0 1 N N N N N N 20.191 10.249 -31.039 4.074 0.798 -3.413 H40 83N 58 83N H38 H27 H 0 1 N N N N N N 18.597 9.552 -31.486 4.554 1.263 -1.763 H38 83N 59 83N H6 H28 H 0 1 N N N N N N 23.692 3.103 -29.439 -2.106 3.521 1.451 H6 83N 60 83N H5 H29 H 0 1 N N N N N N 24.144 4.716 -28.791 -1.384 3.636 -0.190 H5 83N 61 83N H7 H30 H 0 1 N N N N N N 21.387 3.606 -29.454 -1.311 1.275 1.768 H7 83N 62 83N H9 H31 H 0 1 N N N N N N 21.158 5.242 -25.293 -3.451 -0.513 -1.662 H9 83N 63 83N H11 H32 H 0 1 N N N N N N 19.031 4.425 -24.261 -5.678 -0.181 0.397 H11 83N 64 83N H10 H33 H 0 1 N N N N N N 18.731 3.459 -25.745 -5.818 -1.142 -1.094 H10 83N 65 83N H12 H34 H 0 1 N N N N N N 18.714 5.567 -27.067 -3.683 -1.608 1.047 H12 83N 66 83N H14 H35 H 0 1 N N N N N N 19.234 6.822 -24.372 -2.795 -2.762 -0.806 H14 83N 67 83N H13 H36 H 0 1 N N N N N N 19.756 7.343 -26.009 -4.389 -2.857 -1.628 H13 83N 68 83N H8 H37 H 0 1 N N N N N N 20.525 3.292 -27.476 -3.549 0.814 0.935 H8 83N 69 83N H17 H38 H 0 1 N N N N N N 15.661 7.052 -25.312 -5.823 -4.805 1.246 H17 83N 70 83N H24 H39 H 0 1 N N N N N N 18.635 6.900 -31.953 2.276 -1.747 -0.203 H24 83N 71 83N H18 H40 H 0 1 N N N N N N 20.835 2.222 -25.007 -3.979 1.883 -2.205 H18 83N 72 83N H19 H41 H 0 1 N Y N N N N 22.408 3.088 -25.061 -5.300 0.768 -2.629 H19 83N 73 83N H20 H42 H 0 1 N N N N N N 21.665 2.707 -22.920 -6.091 2.661 -1.407 H20 83N 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 83N C19 C17 SING N N 1 83N C20 C17 SING N N 2 83N C18 C17 SING N N 3 83N C17 O7 SING N N 4 83N O7 C16 SING N N 5 83N O6 C16 DOUB N N 6 83N C16 N4 SING N N 7 83N N4 C15 SING N N 8 83N C1 O1 SING N N 9 83N O1 C2 SING N N 10 83N C2 C13 SING N N 11 83N C2 C3 SING N N 12 83N C13 N3 SING N N 13 83N C15 C14 SING N N 14 83N C15 C21 SING N N 15 83N C23 C21 SING N N 16 83N C14 N3 SING N N 17 83N C14 O5 DOUB N N 18 83N N3 C4 SING N N 19 83N C21 C22 SING N N 20 83N C3 C4 SING N N 21 83N C4 C5 SING N N 22 83N C5 O2 DOUB N N 23 83N C5 N1 SING N N 24 83N N1 C6 SING N N 25 83N O3 C11 DOUB N N 26 83N C8 C11 SING N N 27 83N C8 C9 SING N N 28 83N C8 C7 SING N N 29 83N C11 N2 SING N N 30 83N C6 C7 SING N N 31 83N C6 C12 SING N N 32 83N C10 N2 SING N N 33 83N C10 C9 SING N N 34 83N C12 O4 SING N N 35 83N C1 H1 SING N N 36 83N C1 H2 SING N N 37 83N C1 H3 SING N N 38 83N C10 H16 SING N N 39 83N C10 H15 SING N N 40 83N C13 H21 SING N N 41 83N C13 H22 SING N N 42 83N C15 H23 SING N N 43 83N C18 H25 SING N N 44 83N C18 H26 SING N N 45 83N C18 H27 SING N N 46 83N C19 H30 SING N N 47 83N C19 H28 SING N N 48 83N C19 H29 SING N N 49 83N C2 H4 SING N N 50 83N C20 H31 SING N N 51 83N C20 H32 SING N N 52 83N C20 H33 SING N N 53 83N C21 H34 SING N N 54 83N C22 H35 SING N N 55 83N C22 H36 SING N N 56 83N C22 H37 SING N N 57 83N C23 H39 SING N N 58 83N C23 H40 SING N N 59 83N C23 H38 SING N N 60 83N C3 H6 SING N N 61 83N C3 H5 SING N N 62 83N C4 H7 SING N N 63 83N C6 H9 SING N N 64 83N C7 H11 SING N N 65 83N C7 H10 SING N N 66 83N C8 H12 SING N N 67 83N C9 H14 SING N N 68 83N C9 H13 SING N N 69 83N N1 H8 SING N N 70 83N N2 H17 SING N N 71 83N N4 H24 SING N N 72 83N C12 H18 SING N N 73 83N C12 H19 SING N N 74 83N O4 H20 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 83N InChI InChI 1.06 "InChI=1S/C23H40N4O7/c1-13(2)18(26-22(32)34-23(3,4)5)21(31)27-11-16(33-6)10-17(27)20(30)25-15(12-28)9-14-7-8-24-19(14)29/h13-18,28H,7-12H2,1-6H3,(H,24,29)(H,25,30)(H,26,32)/t14-,15-,16-,17-,18-/m0/s1" 83N InChIKey InChI 1.06 AUPBHARHTRTBTF-ATIWLJMLSA-N 83N SMILES_CANONICAL CACTVS 3.385 "CO[C@H]1C[C@H](N(C1)C(=O)[C@@H](NC(=O)OC(C)(C)C)C(C)C)C(=O)N[C@H](CO)C[C@@H]2CCNC2=O" 83N SMILES CACTVS 3.385 "CO[CH]1C[CH](N(C1)C(=O)[CH](NC(=O)OC(C)(C)C)C(C)C)C(=O)N[CH](CO)C[CH]2CCNC2=O" 83N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](C(=O)N1C[C@H](C[C@H]1C(=O)N[C@@H](C[C@@H]2CCNC2=O)CO)OC)NC(=O)OC(C)(C)C" 83N SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(=O)N1CC(CC1C(=O)NC(CC2CCNC2=O)CO)OC)NC(=O)OC(C)(C)C" # _pdbx_chem_comp_identifier.comp_id 83N _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{tert}-butyl ~{N}-[(2~{S})-1-[(2~{S},4~{S})-4-methoxy-2-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]pyrrolidin-1-yl]-3-methyl-1-oxidanylidene-butan-2-yl]carbamate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 83N _pdbx_chem_comp_synonyms.name "tert-butyl-N-[(2S)-1-[(2S,4S)-4-methoxy-2-[[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]pyrrolidin-1-yl]-3-methyl-1-oxidanylidene-butan-2-yl]carbamate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type precursor # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 83N "Create component" 2021-10-04 PDBE 83N "Modify formula" 2021-10-04 PDBE 83N "Modify aromatic_flag" 2021-10-04 PDBE 83N "Modify descriptor" 2022-08-22 RCSB 83N "Initial release" 2023-05-03 RCSB 83N "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 83N _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C12 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #