data_83W # _chem_comp.id 83W _chem_comp.name "tert-butyl-N-[(2S,3R)-3-[(2-methylpropan-2-yl)oxy]-1-oxidanylidene-1-[(2S)-2-[[(2S)-1-oxidanyl-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]pyrrolidin-1-yl]butan-2-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H44 N4 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "tert-butyl-N-[(2S,3R)-3-[(2-methylpropan-2-yl)oxy]-1-oxidanylidene-1-[(2S)-2-[[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]pyrrolidin-1-yl]butan-2-yl]carbamate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-09-30 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 512.639 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 83W _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7PTA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 83W C1 C1 C 0 1 N N N N N N 21.413 5.034 -27.913 2.214 0.378 -0.099 C1 83W 1 83W C10 C2 C 0 1 N N N N N N 23.280 4.541 -29.505 1.924 1.211 -2.435 C10 83W 2 83W C11 C3 C 0 1 N N N N N N 23.539 5.094 -30.885 0.604 1.560 -3.171 C11 83W 3 83W C12 C4 C 0 1 N N N N N N 22.653 6.316 -30.915 -0.427 1.479 -2.017 C12 83W 4 83W C13 C5 C 0 1 N N N N N N 20.202 6.304 -30.313 -0.745 -0.378 -0.357 C13 83W 5 83W C14 C6 C 0 1 N N S N N N 19.975 7.564 -31.135 -2.190 -0.004 -0.152 C14 83W 6 83W C15 C7 C 0 1 N N N N N N 19.937 7.406 -33.562 -4.280 -1.241 0.048 C15 83W 7 83W C16 C8 C 0 1 N N N N N N 19.426 7.116 -35.964 -6.406 -2.318 0.177 C16 83W 8 83W C17 C9 C 0 1 N N N N N N 19.511 8.587 -36.300 -6.574 -2.340 -1.343 C17 83W 9 83W C18 C10 C 0 1 N N N N N N 18.294 6.449 -36.705 -7.090 -1.074 0.748 C18 83W 10 83W C19 C11 C 0 1 N N N N N N 20.734 6.406 -36.224 -7.043 -3.572 0.779 C19 83W 11 83W C2 C12 C 0 1 N N S N N N 20.522 4.252 -25.763 4.279 0.487 1.191 C2 83W 12 83W C20 C13 C 0 1 N N R N N N 19.099 8.585 -30.382 -2.291 1.065 0.938 C20 83W 13 83W C21 C14 C 0 1 N N N N N N 19.700 8.898 -29.035 -1.806 0.483 2.268 C21 83W 14 83W C22 C15 C 0 1 N N N N N N 17.761 10.454 -31.341 -2.215 3.382 0.333 C22 83W 15 83W C23 C16 C 0 1 N N N N N N 17.066 10.670 -30.014 -2.926 3.822 1.614 C23 83W 16 83W C24 C17 C 0 1 N N N N N N 16.926 9.582 -32.255 -3.252 3.122 -0.762 C24 83W 17 83W C25 C18 C 0 1 N N N N N N 18.079 11.774 -32.015 -1.258 4.485 -0.124 C25 83W 18 83W C3 C19 C 0 1 N N N N N N 19.021 4.297 -25.549 5.614 -0.259 1.146 C3 83W 19 83W C4 C20 C 0 1 N N S N N N 18.335 5.512 -26.187 5.354 -1.766 1.079 C4 83W 20 83W C5 C21 C 0 1 N N N N N N 18.727 6.859 -25.593 6.689 -2.545 1.064 C5 83W 21 83W C6 C22 C 0 1 N N N N N N 17.510 7.735 -25.767 6.929 -2.729 -0.451 C6 83W 22 83W C7 C23 C 0 1 N N N N N N 16.830 5.521 -26.016 4.696 -2.131 -0.233 C7 83W 23 83W C8 C24 C 0 1 N N N N N N 21.184 3.133 -24.972 4.537 1.983 1.383 C8 83W 24 83W C9 C25 C 0 1 N N S N N N 21.759 4.705 -29.356 1.473 0.165 -1.393 C9 83W 25 83W N1 N1 N 0 1 N N N N N N 20.831 4.076 -27.180 3.558 0.274 -0.066 N1 83W 26 83W N2 N2 N 0 1 N N N N N N 16.436 6.750 -25.741 5.599 -2.673 -1.068 N2 83W 27 83W N3 N3 N 0 1 N N N N N N 21.446 5.829 -30.227 0.031 0.355 -1.181 N3 83W 28 83W N4 N4 N 0 1 N N N N N N 19.349 7.167 -32.378 -2.949 -1.189 0.254 N4 83W 29 83W O1 O1 O 0 1 N N N N N N 21.682 6.144 -27.445 1.603 0.649 0.913 O1 83W 30 83W O2 O2 O 0 1 N N N N N N 16.084 4.559 -26.196 3.523 -1.961 -0.493 O2 83W 31 83W O3 O3 O 0 1 N N N N N N 21.058 3.338 -23.580 5.417 2.450 0.359 O3 83W 32 83W O4 O4 O 0 1 N N N N N N 19.271 5.742 -29.719 -0.280 -1.339 0.218 O4 83W 33 83W O5 O5 O 0 1 N N N N N N 21.039 7.878 -33.716 -4.837 -0.344 -0.553 O5 83W 34 83W O6 O6 O 0 1 N N N N N N 19.109 7.005 -34.523 -4.992 -2.287 0.508 O6 83W 35 83W O7 O7 O 0 1 N N N N N N 19.043 9.799 -31.150 -1.477 2.185 0.584 O7 83W 36 83W H15 H1 H 0 1 N N N N N N 23.573 3.483 -29.440 2.648 0.779 -3.126 H15 83W 37 83W H16 H2 H 0 1 N N N N N N 23.818 5.118 -28.739 2.339 2.091 -1.943 H16 83W 38 83W H17 H3 H 0 1 N N N N N N 23.249 4.373 -31.664 0.644 2.565 -3.590 H17 83W 39 83W H18 H4 H 0 1 N N N N N N 24.597 5.366 -31.013 0.382 0.825 -3.945 H18 83W 40 83W H19 H5 H 0 1 N N N N N N 23.111 7.157 -30.373 -0.425 2.405 -1.442 H19 83W 41 83W H20 H6 H 0 1 N N N N N N 22.429 6.623 -31.947 -1.423 1.278 -2.411 H20 83W 42 83W H21 H7 H 0 1 N N N N N N 20.950 8.029 -31.343 -2.600 0.388 -1.084 H21 83W 43 83W H23 H8 H 0 1 N N N N N N 20.344 9.043 -35.745 -6.086 -3.226 -1.750 H23 83W 44 83W H24 H9 H 0 1 N N N N N N 19.681 8.707 -37.380 -7.635 -2.363 -1.591 H24 83W 45 83W H25 H10 H 0 1 N N N N N N 18.569 9.082 -36.020 -6.120 -1.446 -1.772 H25 83W 46 83W H27 H11 H 0 1 N N N N N N 18.259 5.382 -36.439 -6.719 -0.187 0.236 H27 83W 47 83W H28 H12 H 0 1 N N N N N N 17.343 6.927 -36.428 -8.168 -1.154 0.603 H28 83W 48 83W H26 H13 H 0 1 N N N N N N 18.454 6.552 -37.788 -6.872 -0.997 1.814 H26 83W 49 83W H29 H14 H 0 1 N N N N N N 21.542 6.911 -35.674 -6.923 -3.557 1.862 H29 83W 50 83W H30 H15 H 0 1 N N N N N N 20.658 5.362 -35.887 -8.104 -3.596 0.531 H30 83W 51 83W H31 H16 H 0 1 N N N N N N 20.955 6.428 -37.301 -6.555 -4.458 0.372 H31 83W 52 83W H2 H17 H 0 1 N N N N N N 20.946 5.208 -25.422 3.681 0.112 2.021 H2 83W 53 83W H32 H18 H 0 1 N N N N N N 18.091 8.166 -30.248 -3.327 1.385 1.038 H32 83W 54 83W H35 H19 H 0 1 N N N N N N 19.751 7.979 -28.433 -0.743 0.252 2.198 H35 83W 55 83W H33 H20 H 0 1 N N N N N N 20.714 9.303 -29.171 -1.968 1.211 3.063 H33 83W 56 83W H34 H21 H 0 1 N N N N N N 19.074 9.641 -28.518 -2.362 -0.428 2.490 H34 83W 57 83W H36 H22 H 0 1 N N N N N N 17.692 11.305 -29.370 -2.187 4.008 2.394 H36 83W 58 83W H37 H23 H 0 1 N N N N N N 16.097 11.163 -30.184 -3.489 4.736 1.422 H37 83W 59 83W H38 H24 H 0 1 N N N N N N 16.903 9.699 -29.523 -3.608 3.036 1.939 H38 83W 60 83W H41 H25 H 0 1 N N N N N N 16.704 8.629 -31.752 -3.882 2.281 -0.473 H41 83W 61 83W H39 H26 H 0 1 N N N N N N 15.984 10.098 -32.494 -3.870 4.010 -0.896 H39 83W 62 83W H40 H27 H 0 1 N N N N N N 17.483 9.385 -33.183 -2.743 2.890 -1.697 H40 83W 63 83W H44 H28 H 0 1 N N N N N N 18.685 12.395 -31.339 -0.825 4.215 -1.087 H44 83W 64 83W H42 H29 H 0 1 N N N N N N 18.640 11.586 -32.942 -1.804 5.424 -0.221 H42 83W 65 83W H43 H30 H 0 1 N N N N N N 17.142 12.299 -32.253 -0.462 4.603 0.612 H43 83W 66 83W H3 H31 H 0 1 N N N N N N 18.827 4.319 -24.467 6.175 0.052 0.265 H3 83W 67 83W H4 H32 H 0 1 N N N N N N 18.583 3.386 -25.982 6.189 -0.029 2.043 H4 83W 68 83W H5 H33 H 0 1 N N N N N N 18.569 5.520 -27.262 4.735 -2.085 1.918 H5 83W 69 83W H7 H34 H 0 1 N N N N N N 18.977 6.753 -24.527 7.488 -1.959 1.517 H7 83W 70 83W H6 H35 H 0 1 N N N N N N 19.588 7.283 -26.131 6.584 -3.509 1.562 H6 83W 71 83W H9 H36 H 0 1 N N N N N N 17.537 8.275 -26.725 7.557 -1.923 -0.834 H9 83W 72 83W H8 H37 H 0 1 N N N N N N 17.413 8.457 -24.942 7.395 -3.695 -0.645 H8 83W 73 83W H14 H40 H 0 1 N N N N N N 21.242 3.789 -29.678 1.666 -0.840 -1.769 H14 83W 74 83W H1 H41 H 0 1 N N N N N N 20.599 3.208 -27.619 4.047 0.057 -0.876 H1 83W 75 83W H10 H42 H 0 1 N N N N N N 15.486 6.984 -25.533 5.397 -2.987 -1.964 H10 83W 76 83W H22 H43 H 0 1 N N N N N N 18.462 6.706 -32.355 -2.493 -1.937 0.672 H22 83W 77 83W H11 H44 H 0 1 N N N N N N 20.708 2.178 -25.237 3.593 2.525 1.326 H11 83W 78 83W H12 H45 H 0 1 N Y N N N N 22.252 3.095 -25.232 4.994 2.150 2.358 H12 83W 79 83W H13 H46 H 0 1 N N N N N N 21.480 2.625 -23.115 5.626 3.392 0.418 H13 83W 80 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 83W C18 C16 SING N N 1 83W C17 C16 SING N N 2 83W C19 C16 SING N N 3 83W C16 O6 SING N N 4 83W O6 C15 SING N N 5 83W O5 C15 DOUB N N 6 83W C15 N4 SING N N 7 83W N4 C14 SING N N 8 83W C24 C22 SING N N 9 83W C25 C22 SING N N 10 83W C22 O7 SING N N 11 83W C22 C23 SING N N 12 83W O7 C20 SING N N 13 83W C14 C20 SING N N 14 83W C14 C13 SING N N 15 83W C12 C11 SING N N 16 83W C12 N3 SING N N 17 83W C11 C10 SING N N 18 83W C20 C21 SING N N 19 83W C13 N3 SING N N 20 83W C13 O4 DOUB N N 21 83W N3 C9 SING N N 22 83W C10 C9 SING N N 23 83W C9 C1 SING N N 24 83W C1 O1 DOUB N N 25 83W C1 N1 SING N N 26 83W N1 C2 SING N N 27 83W O2 C7 DOUB N N 28 83W C4 C7 SING N N 29 83W C4 C5 SING N N 30 83W C4 C3 SING N N 31 83W C7 N2 SING N N 32 83W C6 N2 SING N N 33 83W C6 C5 SING N N 34 83W C2 C3 SING N N 35 83W C2 C8 SING N N 36 83W C8 O3 SING N N 37 83W C10 H15 SING N N 38 83W C10 H16 SING N N 39 83W C11 H17 SING N N 40 83W C11 H18 SING N N 41 83W C12 H19 SING N N 42 83W C12 H20 SING N N 43 83W C14 H21 SING N N 44 83W C17 H23 SING N N 45 83W C17 H24 SING N N 46 83W C17 H25 SING N N 47 83W C18 H27 SING N N 48 83W C18 H28 SING N N 49 83W C18 H26 SING N N 50 83W C19 H29 SING N N 51 83W C19 H30 SING N N 52 83W C19 H31 SING N N 53 83W C2 H2 SING N N 54 83W C20 H32 SING N N 55 83W C21 H35 SING N N 56 83W C21 H33 SING N N 57 83W C21 H34 SING N N 58 83W C23 H36 SING N N 59 83W C23 H37 SING N N 60 83W C23 H38 SING N N 61 83W C24 H41 SING N N 62 83W C24 H39 SING N N 63 83W C24 H40 SING N N 64 83W C25 H44 SING N N 65 83W C25 H42 SING N N 66 83W C25 H43 SING N N 67 83W C3 H3 SING N N 68 83W C3 H4 SING N N 69 83W C4 H5 SING N N 70 83W C5 H7 SING N N 71 83W C5 H6 SING N N 72 83W C6 H9 SING N N 73 83W C6 H8 SING N N 74 83W C9 H14 SING N N 75 83W N1 H1 SING N N 76 83W N2 H10 SING N N 77 83W N4 H22 SING N N 78 83W C8 H11 SING N N 79 83W C8 H12 SING N N 80 83W O3 H13 SING N N 81 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 83W InChI InChI 1.06 "InChI=1S/C25H44N4O7/c1-15(35-24(2,3)4)19(28-23(34)36-25(5,6)7)22(33)29-12-8-9-18(29)21(32)27-17(14-30)13-16-10-11-26-20(16)31/h15-19,30H,8-14H2,1-7H3,(H,26,31)(H,27,32)(H,28,34)/t15-,16+,17+,18+,19+/m1/s1" 83W InChIKey InChI 1.06 FREYRXXGOYXVLM-BCYZHJNNSA-N 83W SMILES_CANONICAL CACTVS 3.385 "C[C@@H](OC(C)(C)C)[C@H](NC(=O)OC(C)(C)C)C(=O)N1CCC[C@H]1C(=O)N[C@H](CO)C[C@@H]2CCNC2=O" 83W SMILES CACTVS 3.385 "C[CH](OC(C)(C)C)[CH](NC(=O)OC(C)(C)C)C(=O)N1CCC[CH]1C(=O)N[CH](CO)C[CH]2CCNC2=O" 83W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]([C@@H](C(=O)N1CCC[C@H]1C(=O)N[C@@H](C[C@@H]2CCNC2=O)CO)NC(=O)OC(C)(C)C)OC(C)(C)C" 83W SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(C(=O)N1CCCC1C(=O)NC(CC2CCNC2=O)CO)NC(=O)OC(C)(C)C)OC(C)(C)C" # _pdbx_chem_comp_identifier.comp_id 83W _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{tert}-butyl ~{N}-[(2~{S},3~{R})-3-[(2-methylpropan-2-yl)oxy]-1-oxidanylidene-1-[(2~{S})-2-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]pyrrolidin-1-yl]butan-2-yl]carbamate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 83W _pdbx_chem_comp_synonyms.name "tert-butyl-N-[(2S,3R)-3-[(2-methylpropan-2-yl)oxy]-1-oxidanylidene-1-[(2S)-2-[[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]pyrrolidin-1-yl]butan-2-yl]carbamate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type precursor # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 83W "Create component" 2021-10-04 PDBE 83W "Modify formula" 2021-10-04 PDBE 83W "Modify aromatic_flag" 2021-10-04 PDBE 83W "Modify descriptor" 2022-08-22 RCSB 83W "Initial release" 2023-05-03 RCSB 83W "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 83W _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C8 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #