data_84C # _chem_comp.id 84C _chem_comp.name "tert-butyl-N-[(2S)-1-[(3S,3aS,6aR)-3-[[(2S)-1-oxidanyl-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]-3,3a,4,5,6,6a-hexahydro-1H-cyclopenta[c]pyrrol-2-yl]-3-methyl-1-oxidanylidene-butan-2-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H42 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "tert-butyl N-[(2S)-1-[(3S,3aS,6aR)-3-[[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]-3,3a,4,5,6,6a-hexahydro-1H-cyclopenta[c]pyrrol-2-yl]-3-methyl-1-oxidanylidene-butan-2-yl]carbamate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-09-30 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 494.624 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 84C _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7PTC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 84C N1 N1 N 0 1 N N N N N N 16.506 6.537 -25.661 -4.315 -2.642 1.996 N1 84C 1 84C N3 N2 N 0 1 N N N N N N 21.448 5.688 -30.159 0.174 1.120 0.275 N3 84C 2 84C C4 C1 C 0 1 N N S N N N 18.436 5.370 -26.141 -4.424 -2.630 -0.345 C4 84C 3 84C C5 C2 C 0 1 N N N N N N 19.107 4.112 -25.572 -5.136 -1.406 -0.924 C5 84C 4 84C C6 C3 C 0 1 N N S N N N 20.630 4.056 -25.789 -4.096 -0.407 -1.437 C6 84C 5 84C C7 C4 C 0 1 N N N N N N 21.594 4.782 -27.935 -2.060 0.567 -0.519 C7 84C 6 84C C8 C5 C 0 1 N N S N N N 21.779 4.474 -29.426 -1.248 1.087 0.639 C8 84C 7 84C C10 C6 C 0 1 N N R N N N 23.591 5.101 -30.927 -0.585 3.396 0.278 C10 84C 8 84C C13 C7 C 0 1 N N N N N N 23.427 2.764 -30.373 -1.424 2.776 2.477 C13 84C 9 84C C15 C8 C 0 1 N N N N N N 20.209 6.208 -30.127 0.908 0.061 -0.120 C15 84C 10 84C C1 C9 C 0 1 N N N N N N 16.926 5.336 -26.031 -3.647 -2.253 0.897 C1 84C 11 84C C11 C10 C 0 1 N N N N N N 23.407 4.282 -32.215 -0.423 4.630 1.179 C11 84C 12 84C C12 C11 C 0 1 N N N N N N 22.883 2.941 -31.775 -0.978 4.248 2.567 C12 84C 13 84C C14 C12 C 0 1 N N S N N N 23.232 4.163 -29.764 -1.680 2.528 0.973 C14 84C 14 84C C16 C13 C 0 1 N N S N N N 19.982 7.558 -30.802 2.330 0.258 -0.579 C16 84C 15 84C C2 C14 C 0 1 N N N N N N 17.580 7.524 -25.569 -5.582 -3.295 1.647 C2 84C 16 84C C3 C15 C 0 1 N N N N N N 18.815 6.660 -25.439 -5.458 -3.663 0.152 C3 84C 17 84C C9 C16 C 0 1 N N N N N N 22.635 6.281 -30.793 0.665 2.502 0.406 C9 84C 18 84C N2 N3 N 0 1 N N N N N N 20.922 3.889 -27.212 -3.307 0.099 -0.312 N2 84C 19 84C N4 N4 N 0 1 N N N N N N 19.295 7.324 -32.066 3.145 -0.880 -0.146 N4 84C 20 84C O1 O1 O 0 1 N N N N N N 16.214 4.372 -26.319 -2.576 -1.683 0.900 O1 84C 21 84C C17 C17 C 0 1 N N N N N N 19.937 7.483 -33.242 4.474 -0.732 0.022 C17 84C 22 84C C18 C18 C 0 1 N N N N N N 19.557 7.019 -35.657 6.647 -1.546 0.581 C18 84C 23 84C C19 C19 C 0 1 N N N N N N 20.606 5.935 -35.715 6.870 -0.457 1.632 C19 84C 24 84C C20 C20 C 0 1 N N N N N N 18.324 6.630 -36.443 7.244 -1.096 -0.754 C20 84C 25 84C C21 C21 C 0 1 N N N N N N 20.116 8.338 -36.140 7.327 -2.839 1.034 C21 84C 26 84C C22 C22 C 0 1 N N N N N N 19.202 8.502 -29.864 2.364 0.359 -2.105 C22 84C 27 84C C23 C23 C 0 1 N N N N N N 19.961 8.768 -28.571 1.613 1.616 -2.550 C23 84C 28 84C C24 C24 C 0 1 N N N N N N 18.846 9.800 -30.577 3.817 0.438 -2.579 C24 84C 29 84C C25 C25 C 0 1 N N N N N N 21.260 2.921 -24.994 -4.806 0.759 -2.127 C25 84C 30 84C O2 O2 O 0 1 N N N N N N 22.019 5.834 -27.458 -1.592 0.568 -1.638 O2 84C 31 84C O3 O3 O 0 1 N N N N N N 19.298 5.617 -29.537 0.424 -1.051 -0.106 O3 84C 32 84C O4 O4 O 0 1 N N N N N N 21.091 7.842 -33.350 4.996 0.345 -0.184 O4 84C 33 84C O5 O5 O 0 1 N N N N N N 19.102 7.177 -34.252 5.223 -1.778 0.420 O5 84C 34 84C O6 O6 O 0 1 N N N N N N 21.176 3.157 -23.599 -5.756 1.337 -1.230 O6 84C 35 84C H1 H1 H 0 1 N N N N N N 15.548 6.747 -25.464 -3.998 -2.511 2.904 H1 84C 36 84C H6 H2 H 0 1 N N N N N N 18.708 5.457 -27.203 -3.763 -3.073 -1.089 H6 84C 37 84C H7 H3 H 0 1 N N N N N N 18.911 4.076 -24.490 -5.780 -1.715 -1.746 H7 84C 38 84C H8 H4 H 0 1 N N N N N N 18.657 3.232 -26.056 -5.739 -0.935 -0.147 H8 84C 39 84C H9 H5 H 0 1 N N N N N N 21.062 5.006 -25.440 -3.437 -0.904 -2.149 H9 84C 40 84C H11 H6 H 0 1 N N N N N N 21.130 3.637 -29.724 -1.392 0.446 1.509 H11 84C 41 84C H14 H7 H 0 1 N N N N N N 24.634 5.439 -30.836 -0.830 3.641 -0.756 H14 84C 42 84C H19 H8 H 0 1 N N N N N N 22.856 2.005 -29.818 -0.635 2.118 2.841 H19 84C 43 84C H20 H9 H 0 1 N N N N N N 24.490 2.483 -30.391 -2.339 2.620 3.048 H20 84C 44 84C H15 H10 H 0 1 N N N N N N 24.369 4.166 -32.736 0.630 4.897 1.261 H15 84C 45 84C H16 H11 H 0 1 N N N N N N 22.685 4.775 -32.883 -0.989 5.468 0.771 H16 84C 46 84C H17 H12 H 0 1 N N N N N N 21.783 2.936 -31.769 -1.831 4.880 2.815 H17 84C 47 84C H18 H13 H 0 1 N N N N N N 23.250 2.144 -32.438 -0.200 4.356 3.323 H18 84C 48 84C H21 H14 H 0 1 N N N N N N 23.893 4.322 -28.899 -2.695 2.774 0.661 H21 84C 49 84C H22 H15 H 0 1 N N N N N N 20.964 8.012 -31.003 2.728 1.175 -0.145 H22 84C 50 84C H2 H16 H 0 1 N N N N N N 17.625 8.147 -26.475 -5.720 -4.195 2.247 H2 84C 51 84C H3 H17 H 0 1 N N N N N N 17.452 8.168 -24.687 -6.415 -2.608 1.799 H3 84C 52 84C H4 H18 H 0 1 N N N N N N 19.053 6.474 -24.381 -6.410 -3.542 -0.364 H4 84C 53 84C H5 H19 H 0 1 N N N N N N 19.677 7.134 -25.931 -5.080 -4.679 0.037 H5 84C 54 84C H13 H20 H 0 1 N N N N N N 23.068 7.068 -30.159 1.130 2.641 1.382 H13 84C 55 84C H12 H21 H 0 1 N N N N N N 22.386 6.700 -31.779 1.376 2.731 -0.388 H12 84C 56 84C H10 H22 H 0 1 N N N N N N 20.599 3.059 -27.667 -3.682 0.097 0.583 H10 84C 57 84C H23 H23 H 0 1 N N N N N N 18.336 7.042 -32.062 2.728 -1.740 0.019 H23 84C 58 84C H24 H24 H 0 1 N N N N N N 21.488 6.246 -35.136 6.445 -0.777 2.583 H24 84C 59 84C H25 H25 H 0 1 N N N N N N 20.197 5.006 -35.290 7.939 -0.282 1.753 H25 84C 60 84C H26 H26 H 0 1 N N N N N N 20.897 5.762 -36.762 6.386 0.465 1.309 H26 84C 61 84C H29 H27 H 0 1 N N N N N N 17.940 5.669 -36.071 6.760 -0.174 -1.077 H29 84C 62 84C H27 H28 H 0 1 N N N N N N 17.553 7.405 -36.322 8.313 -0.921 -0.633 H27 84C 63 84C H28 H29 H 0 1 N N N N N N 18.583 6.534 -37.508 7.085 -1.871 -1.503 H28 84C 64 84C H31 H30 H 0 1 N N N N N N 21.010 8.595 -35.552 7.168 -3.615 0.285 H31 84C 65 84C H32 H31 H 0 1 N N N N N N 20.388 8.254 -37.203 8.396 -2.665 1.155 H32 84C 66 84C H30 H32 H 0 1 N N N N N N 19.357 9.125 -36.017 6.901 -3.159 1.985 H30 84C 67 84C H33 H33 H 0 1 N N N N N N 18.260 7.998 -29.600 1.888 -0.521 -2.538 H33 84C 68 84C H34 H34 H 0 1 N N N N N N 19.373 9.443 -27.932 2.066 2.492 -2.086 H34 84C 69 84C H35 H35 H 0 1 N N N N N N 20.130 7.818 -28.043 1.671 1.708 -3.635 H35 84C 70 84C H36 H36 H 0 1 N N N N N N 20.929 9.235 -28.804 0.569 1.542 -2.246 H36 84C 71 84C H38 H37 H 0 1 N N N N N N 18.291 10.456 -29.890 4.352 -0.457 -2.261 H38 84C 72 84C H39 H38 H 0 1 N N N N N N 19.768 10.305 -30.902 3.841 0.510 -3.666 H39 84C 73 84C H37 H39 H 0 1 N N N N N N 18.222 9.577 -31.455 4.293 1.318 -2.145 H37 84C 74 84C H40 H40 H 0 1 N N N N N N 20.735 1.984 -25.231 -4.073 1.512 -2.415 H40 84C 75 84C H41 H41 H 0 1 N Y N N N N 22.319 2.830 -25.278 -5.322 0.396 -3.017 H41 84C 76 84C H42 H42 H 0 1 N N N N N N 21.576 2.434 -23.130 -6.245 2.084 -1.601 H42 84C 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 84C C20 C18 SING N N 1 84C C21 C18 SING N N 2 84C C19 C18 SING N N 3 84C C18 O5 SING N N 4 84C O5 C17 SING N N 5 84C O4 C17 DOUB N N 6 84C C17 N4 SING N N 7 84C C11 C12 SING N N 8 84C C11 C10 SING N N 9 84C N4 C16 SING N N 10 84C C12 C13 SING N N 11 84C C10 C9 SING N N 12 84C C10 C14 SING N N 13 84C C16 C15 SING N N 14 84C C16 C22 SING N N 15 84C C9 N3 SING N N 16 84C C24 C22 SING N N 17 84C C13 C14 SING N N 18 84C N3 C15 SING N N 19 84C N3 C8 SING N N 20 84C C15 O3 DOUB N N 21 84C C22 C23 SING N N 22 84C C14 C8 SING N N 23 84C C8 C7 SING N N 24 84C C7 O2 DOUB N N 25 84C C7 N2 SING N N 26 84C N2 C6 SING N N 27 84C O1 C1 DOUB N N 28 84C C4 C1 SING N N 29 84C C4 C5 SING N N 30 84C C4 C3 SING N N 31 84C C1 N1 SING N N 32 84C C6 C5 SING N N 33 84C C6 C25 SING N N 34 84C N1 C2 SING N N 35 84C C2 C3 SING N N 36 84C C25 O6 SING N N 37 84C N1 H1 SING N N 38 84C C4 H6 SING N N 39 84C C5 H7 SING N N 40 84C C5 H8 SING N N 41 84C C6 H9 SING N N 42 84C C8 H11 SING N N 43 84C C10 H14 SING N N 44 84C C13 H19 SING N N 45 84C C13 H20 SING N N 46 84C C11 H15 SING N N 47 84C C11 H16 SING N N 48 84C C12 H17 SING N N 49 84C C12 H18 SING N N 50 84C C14 H21 SING N N 51 84C C16 H22 SING N N 52 84C C2 H2 SING N N 53 84C C2 H3 SING N N 54 84C C3 H4 SING N N 55 84C C3 H5 SING N N 56 84C C9 H13 SING N N 57 84C C9 H12 SING N N 58 84C N2 H10 SING N N 59 84C N4 H23 SING N N 60 84C C19 H24 SING N N 61 84C C19 H25 SING N N 62 84C C19 H26 SING N N 63 84C C20 H29 SING N N 64 84C C20 H27 SING N N 65 84C C20 H28 SING N N 66 84C C21 H31 SING N N 67 84C C21 H32 SING N N 68 84C C21 H30 SING N N 69 84C C22 H33 SING N N 70 84C C23 H34 SING N N 71 84C C23 H35 SING N N 72 84C C23 H36 SING N N 73 84C C24 H38 SING N N 74 84C C24 H39 SING N N 75 84C C24 H37 SING N N 76 84C C25 H40 SING N N 77 84C C25 H41 SING N N 78 84C O6 H42 SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 84C InChI InChI 1.06 "InChI=1S/C25H42N4O6/c1-14(2)19(28-24(34)35-25(3,4)5)23(33)29-12-16-7-6-8-18(16)20(29)22(32)27-17(13-30)11-15-9-10-26-21(15)31/h14-20,30H,6-13H2,1-5H3,(H,26,31)(H,27,32)(H,28,34)/t15-,16-,17-,18-,19-,20-/m0/s1" 84C InChIKey InChI 1.06 MFQBHMWPFDDNFU-RABCQHRBSA-N 84C SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](NC(=O)OC(C)(C)C)C(=O)N1C[C@@H]2CCC[C@@H]2[C@H]1C(=O)N[C@H](CO)C[C@@H]3CCNC3=O" 84C SMILES CACTVS 3.385 "CC(C)[CH](NC(=O)OC(C)(C)C)C(=O)N1C[CH]2CCC[CH]2[CH]1C(=O)N[CH](CO)C[CH]3CCNC3=O" 84C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](C(=O)N1C[C@@H]2CCC[C@@H]2[C@H]1C(=O)N[C@@H](C[C@@H]3CCNC3=O)CO)NC(=O)OC(C)(C)C" 84C SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(=O)N1CC2CCCC2C1C(=O)NC(CC3CCNC3=O)CO)NC(=O)OC(C)(C)C" # _pdbx_chem_comp_identifier.comp_id 84C _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{tert}-butyl ~{N}-[(2~{S})-1-[(3~{S},3~{a}~{S},6~{a}~{R})-3-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]-3,3~{a},4,5,6,6~{a}-hexahydro-1~{H}-cyclopenta[c]pyrrol-2-yl]-3-methyl-1-oxidanylidene-butan-2-yl]carbamate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 84C _pdbx_chem_comp_synonyms.name "tert-butyl N-[(2S)-1-[(3S,3aS,6aR)-3-[[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]-3,3a,4,5,6,6a-hexahydro-1H-cyclopenta[c]pyrrol-2-yl]-3-methyl-1-oxidanylidene-butan-2-yl]carbamate" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type precursor # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 84C "Create component" 2021-09-30 PDBE 84C "Modify formula" 2021-09-30 PDBE 84C "Modify aromatic_flag" 2021-10-04 PDBE 84C "Modify descriptor" 2022-08-22 RCSB 84C "Initial release" 2023-05-03 RCSB 84C "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 84C _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C25 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #