data_84T # _chem_comp.id 84T _chem_comp.name "[(2S,4S,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-oxolan-2-yl]methoxy-N-[(2S,3R)-4-methyl-2,3-bis(oxidanyl)pentanoyl]phosphonamidic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H25 N6 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-12-19 _chem_comp.pdbx_modified_date 2014-09-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 460.379 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 84T _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3ZGZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 84T O1P O1P O 0 1 N N N -49.578 32.814 -40.538 -2.480 3.455 -0.724 O1P 84T 1 84T P P P 0 1 N N N -49.265 32.333 -39.135 -2.381 2.242 0.329 P 84T 2 84T O2P O2P O 0 1 N N N -48.474 31.075 -38.859 -2.071 2.780 1.673 O2P 84T 3 84T N N N 0 1 N N N -48.565 33.569 -38.261 -3.811 1.441 0.377 N 84T 4 84T C C C 0 1 N N N -48.351 33.427 -36.937 -4.298 0.864 -0.739 C 84T 5 84T CA CA C 0 1 N N S -47.743 34.630 -36.252 -5.612 0.128 -0.695 CA 84T 6 84T CB CB C 0 1 N N R -48.782 35.258 -35.352 -5.480 -1.098 0.211 CB 84T 7 84T CG CG C 0 1 N N N -48.290 36.481 -34.568 -6.790 -1.888 0.193 CG 84T 8 84T CD2 CD2 C 0 1 N N N -47.177 36.161 -33.565 -6.614 -3.186 0.984 CD2 84T 9 84T CD1 CD1 C 0 1 N N N -49.451 37.151 -33.839 -7.900 -1.050 0.831 CD1 84T 10 84T OHB OHB O 0 1 N N N -49.867 35.626 -36.217 -4.417 -1.927 -0.262 OHB 84T 11 84T OH OH O 0 1 N N N -47.369 35.619 -37.234 -5.968 -0.291 -2.014 OH 84T 12 84T O O O 0 1 N N N -48.619 32.410 -36.291 -3.678 0.937 -1.779 O 84T 13 84T "O5'" "O5'" O 0 1 N N N -50.702 32.131 -38.479 -1.214 1.230 -0.125 "O5'" 84T 14 84T "C5'" "C5'" C 0 1 N N N -51.578 33.249 -38.423 -0.738 0.169 0.704 "C5'" 84T 15 84T "C4'" "C4'" C 0 1 N N S -52.631 33.077 -37.337 0.366 -0.595 -0.029 "C4'" 84T 16 84T "C3'" "C3'" C 0 1 N N N -52.042 32.629 -35.995 0.810 -1.824 0.796 "C3'" 84T 17 84T "C2'" "C2'" C 0 1 N N S -53.173 31.816 -35.398 2.336 -1.900 0.565 "C2'" 84T 18 84T "O2'" "O2'" O 0 1 N N N -52.747 30.801 -34.497 3.038 -1.752 1.801 "O2'" 84T 19 84T "O4'" "O4'" O 0 1 N N N -53.575 32.089 -37.723 1.553 0.221 -0.143 "O4'" 84T 20 84T "C1'" "C1'" C 0 1 N N R -53.857 31.236 -36.601 2.634 -0.709 -0.373 "C1'" 84T 21 84T N9 N9 N 0 1 Y N N -53.380 29.885 -36.975 3.917 -0.094 -0.025 N9 84T 22 84T C4 C4 C 0 1 Y N N -54.141 28.804 -36.839 5.155 -0.497 -0.460 C4 84T 23 84T N3 N3 N 0 1 Y N N -55.395 28.643 -36.335 5.601 -1.465 -1.254 N3 84T 24 84T C2 C2 C 0 1 Y N N -55.946 27.418 -36.310 6.889 -1.601 -1.487 C2 84T 25 84T C8 C8 C 0 1 Y N N -52.215 29.513 -37.562 4.101 0.986 0.786 C8 84T 26 84T N7 N7 N 0 1 Y N N -52.239 28.172 -37.766 5.369 1.263 0.877 N7 84T 27 84T C5 C5 C 0 1 Y N N -53.427 27.715 -37.331 6.078 0.383 0.129 C5 84T 28 84T C6 C6 C 0 1 Y N N -54.037 26.471 -37.288 7.443 0.198 -0.150 C6 84T 29 84T N1 N1 N 0 1 Y N N -55.281 26.346 -36.770 7.794 -0.799 -0.956 N1 84T 30 84T N6 N6 N 0 1 N N N -53.403 25.375 -37.741 8.398 1.033 0.401 N6 84T 31 84T H1P H1P H 0 1 N N N -49.205 32.211 -41.170 -2.681 3.176 -1.628 H1P 84T 32 84T H H H 0 1 N N N -48.303 34.418 -38.720 -4.307 1.383 1.209 H 84T 33 84T HA HA H 0 1 N N N -46.871 34.320 -35.657 -6.385 0.789 -0.303 HA 84T 34 84T HB HB H 0 1 N N N -49.125 34.501 -34.631 -5.264 -0.775 1.229 HB 84T 35 84T HH HH H 0 1 N N N -46.988 36.372 -36.797 -5.323 -0.882 -2.427 HH 84T 36 84T HG HG H 0 1 N N N -47.888 37.203 -35.294 -7.059 -2.124 -0.837 HG 84T 37 84T HHB HHB H 0 1 N N N -50.558 36.030 -35.705 -4.543 -2.251 -1.164 HHB 84T 38 84T HD21 HD21 H 0 0 N N N -46.877 37.082 -33.043 -7.570 -3.705 1.049 HD21 84T 39 84T HD22 HD22 H 0 0 N N N -47.544 35.427 -32.832 -5.888 -3.823 0.478 HD22 84T 40 84T HD23 HD23 H 0 0 N N N -46.311 35.744 -34.099 -6.256 -2.954 1.987 HD23 84T 41 84T HD11 HD11 H 0 0 N N N -49.080 38.025 -33.283 -8.026 -0.125 0.268 HD11 84T 42 84T HD12 HD12 H 0 0 N N N -50.205 37.475 -34.571 -8.833 -1.613 0.818 HD12 84T 43 84T HD13 HD13 H 0 0 N N N -49.905 36.436 -33.137 -7.632 -0.814 1.860 HD13 84T 44 84T "H5'1" "H5'1" H 0 0 N N N -50.990 34.154 -38.211 -0.339 0.582 1.631 "H5'1" 84T 45 84T "H5'2" "H5'2" H 0 0 N N N -52.081 33.358 -39.395 -1.559 -0.510 0.933 "H5'2" 84T 46 84T "H4'" "H4'" H 0 1 N N N -53.139 34.041 -37.188 0.021 -0.906 -1.015 "H4'" 84T 47 84T "H3'1" "H3'1" H 0 0 N N N -51.143 32.012 -36.141 0.591 -1.673 1.853 "H3'1" 84T 48 84T "H3'2" "H3'2" H 0 0 N N N -51.795 33.493 -35.361 0.323 -2.727 0.429 "H3'2" 84T 49 84T "H2'" "H2'" H 0 1 N N N -53.868 32.501 -34.890 2.603 -2.842 0.086 "H2'" 84T 50 84T HC HC H 0 1 N N N -53.505 30.335 -34.164 2.841 -2.441 2.450 HC 84T 51 84T H8 H8 H 0 1 N N N -51.403 30.175 -37.824 3.311 1.531 1.280 H8 84T 52 84T H2 H2 H 0 1 N N N -56.942 27.293 -35.913 7.218 -2.398 -2.137 H2 84T 53 84T HN61 HN61 H 0 0 N N N -53.990 24.575 -37.617 8.129 1.756 0.989 HN61 84T 54 84T HN62 HN62 H 0 0 N N N -53.194 25.488 -38.712 9.337 0.895 0.201 HN62 84T 55 84T "HC1'" "HC1'" H 0 0 N N N -54.941 31.202 -36.418 2.638 -1.036 -1.412 "HC1'" 84T 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 84T O1P P SING N N 1 84T P O2P DOUB N N 2 84T P N SING N N 3 84T P "O5'" SING N N 4 84T N C SING N N 5 84T C CA SING N N 6 84T C O DOUB N N 7 84T CA CB SING N N 8 84T CA OH SING N N 9 84T CB CG SING N N 10 84T CB OHB SING N N 11 84T CG CD2 SING N N 12 84T CG CD1 SING N N 13 84T "O5'" "C5'" SING N N 14 84T "C5'" "C4'" SING N N 15 84T "C4'" "C3'" SING N N 16 84T "C4'" "O4'" SING N N 17 84T "C3'" "C2'" SING N N 18 84T "C2'" "O2'" SING N N 19 84T "C2'" "C1'" SING N N 20 84T "O4'" "C1'" SING N N 21 84T "C1'" N9 SING N N 22 84T N9 C4 SING Y N 23 84T N9 C8 SING Y N 24 84T C4 N3 SING Y N 25 84T C4 C5 DOUB Y N 26 84T N3 C2 DOUB Y N 27 84T C2 N1 SING Y N 28 84T C8 N7 DOUB Y N 29 84T N7 C5 SING Y N 30 84T C5 C6 SING Y N 31 84T C6 N1 DOUB Y N 32 84T "C1'" "HC1'" SING N N 33 84T O1P H1P SING N N 34 84T N H SING N N 35 84T CA HA SING N N 36 84T CB HB SING N N 37 84T OH HH SING N N 38 84T CG HG SING N N 39 84T OHB HHB SING N N 40 84T CD2 HD21 SING N N 41 84T CD2 HD22 SING N N 42 84T CD2 HD23 SING N N 43 84T CD1 HD11 SING N N 44 84T CD1 HD12 SING N N 45 84T CD1 HD13 SING N N 46 84T "C5'" "H5'1" SING N N 47 84T "C5'" "H5'2" SING N N 48 84T "C4'" "H4'" SING N N 49 84T "C3'" "H3'1" SING N N 50 84T "C3'" "H3'2" SING N N 51 84T "C2'" "H2'" SING N N 52 84T "O2'" HC SING N N 53 84T C8 H8 SING N N 54 84T C2 H2 SING N N 55 84T C6 N6 SING N N 56 84T N6 HN61 SING N N 57 84T N6 HN62 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 84T SMILES ACDLabs 12.01 "O=C(NP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3)C(O)C(O)C(C)C" 84T InChI InChI 1.03 "InChI=1S/C16H25N6O8P/c1-7(2)11(24)12(25)15(26)21-31(27,28)29-4-8-3-9(23)16(30-8)22-6-20-10-13(17)18-5-19-14(10)22/h5-9,11-12,16,23-25H,3-4H2,1-2H3,(H2,17,18,19)(H2,21,26,27,28)/t8-,9-,11+,12-,16+/m0/s1" 84T InChIKey InChI 1.03 KHSKVNAFZAVNFC-UVIICUSPSA-N 84T SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@@H](O)[C@H](O)C(=O)N[P](O)(=O)OC[C@@H]1C[C@H](O)[C@@H](O1)n2cnc3c(N)ncnc23" 84T SMILES CACTVS 3.385 "CC(C)[CH](O)[CH](O)C(=O)N[P](O)(=O)OC[CH]1C[CH](O)[CH](O1)n2cnc3c(N)ncnc23" 84T SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CC(C)[C@H]([C@@H](C(=O)NP(=O)(O)OC[C@@H]1C[C@@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)O" 84T SMILES "OpenEye OEToolkits" 1.9.2 "CC(C)C(C(C(=O)NP(=O)(O)OCC1CC(C(O1)n2cnc3c2ncnc3N)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 84T "SYSTEMATIC NAME" ACDLabs 12.01 "[(2S,4S,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxytetrahydrofuran-2-yl]methyl hydrogen (S)-[(2S,3R)-2,3-dihydroxy-4-methylpentanoyl]phosphoramidate (non-preferred name)" 84T "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[(2S,4S,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-oxolan-2-yl]methoxy-N-[(2S,3R)-4-methyl-2,3-bis(oxidanyl)pentanoyl]phosphonamidic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 84T "Create component" 2012-12-19 EBI 84T "Initial release" 2013-01-25 RCSB 84T "Modify descriptor" 2014-09-05 RCSB #