data_85U # _chem_comp.id 85U _chem_comp.name "methyl 6-[4-[[~{N}-[(~{E})-3-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]prop-2-enyl]carbamimidoyl]amino]butylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H36 N10 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-10-04 _chem_comp.pdbx_modified_date 2022-08-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 648.670 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 85U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7PUC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 85U C1 C1 C 0 1 Y N N 42.359 24.847 126.567 12.340 1.429 -0.327 C1 85U 1 85U C10 C2 C 0 1 Y N N 43.790 24.874 130.021 8.811 1.027 -1.377 C10 85U 2 85U C11 C3 C 0 1 N N N 41.082 24.602 125.839 13.505 2.287 -0.615 C11 85U 3 85U C12 C4 C 0 1 N N N 38.844 25.011 126.465 15.774 2.963 -0.302 C12 85U 4 85U C13 C5 C 0 1 N N N 48.518 26.152 130.040 5.511 -1.088 0.082 C13 85U 5 85U C14 C6 C 0 1 N N N 50.972 26.088 130.249 3.088 -1.327 0.185 C14 85U 6 85U C15 C7 C 0 1 N N N 51.345 27.519 130.594 2.062 -2.443 0.394 C15 85U 7 85U C16 C8 C 0 1 N N N 51.919 27.654 131.990 0.651 -1.855 0.336 C16 85U 8 85U C17 C9 C 0 1 N N N 52.578 31.258 131.431 -2.819 -3.226 0.651 C17 85U 9 85U C18 C10 C 0 1 N N N 51.293 34.976 130.807 -7.441 -3.080 -0.193 C18 85U 10 85U C19 C11 C 0 1 N N R 51.024 36.172 131.623 -8.702 -2.261 -0.294 C19 85U 11 85U C2 C12 C 0 1 Y N N 43.484 25.194 125.818 12.449 0.400 0.627 C2 85U 12 85U C20 C13 C 0 1 N N S 49.541 36.385 131.951 -8.916 -1.779 -1.746 C20 85U 13 85U C21 C14 C 0 1 N N R 49.079 37.136 130.703 -9.498 -0.357 -1.588 C21 85U 14 85U C22 C15 C 0 1 N N R 50.260 38.089 130.519 -9.567 -0.147 -0.059 C22 85U 15 85U C23 C16 C 0 1 Y N N 50.498 37.845 128.008 -8.007 1.708 0.646 C23 85U 16 85U C24 C17 C 0 1 Y N N 50.678 39.863 127.380 -9.341 3.417 0.684 C24 85U 17 85U C25 C18 C 0 1 Y N N 50.818 41.099 126.722 -9.988 4.661 0.780 C25 85U 18 85U C26 C19 C 0 1 Y N N 50.688 42.097 128.806 -11.957 3.648 0.127 C26 85U 19 85U C27 C20 C 0 1 Y N N 50.553 39.897 128.760 -10.101 2.303 0.291 C27 85U 20 85U C28 C21 C 0 1 N N N 52.689 28.936 132.225 -0.375 -2.971 0.545 C28 85U 21 85U C29 C22 C 0 1 N N N 52.710 33.168 129.857 -5.252 -3.570 0.771 C29 85U 22 85U C3 C23 C 0 1 Y N N 44.686 25.432 126.437 11.386 -0.400 0.913 C3 85U 23 85U C30 C24 C 0 1 N N N 52.455 34.375 130.705 -6.513 -2.751 0.671 C30 85U 24 85U C4 C25 C 0 1 Y N N 44.817 25.331 127.852 10.156 -0.202 0.248 C4 85U 25 85U C5 C26 C 0 1 Y N N 43.667 24.978 128.614 10.037 0.832 -0.715 C5 85U 26 85U C6 C27 C 0 1 Y N N 42.447 24.742 127.938 11.145 1.646 -0.995 C6 85U 27 85U C7 C28 C 0 1 Y N N 46.037 25.568 128.534 9.047 -1.015 0.525 C7 85U 28 85U C8 C29 C 0 1 Y N N 46.122 25.459 129.906 7.860 -0.797 -0.141 C8 85U 29 85U C9 C30 C 0 1 Y N N 44.986 25.107 130.639 7.751 0.226 -1.090 C9 85U 30 85U N1 N1 N 0 1 N N N 47.342 25.698 130.586 6.754 -1.606 0.134 N1 85U 31 85U N10 N2 N 0 1 Y N N 50.545 40.986 129.534 -11.393 2.463 0.025 N10 85U 32 85U N2 N3 N 0 1 N N N 49.629 25.728 130.685 4.440 -1.890 0.242 N2 85U 33 85U N3 N4 N 0 1 N N N 51.969 30.097 131.734 -1.727 -2.408 0.488 N3 85U 34 85U N4 N5 N 0 1 N N N 52.051 32.007 130.434 -4.088 -2.698 0.598 N4 85U 35 85U N5 N6 N 0 1 N N N 53.635 31.676 132.063 -2.653 -4.503 0.855 N5 85U 36 85U N6 N7 N 0 1 Y N N 50.435 38.588 129.158 -9.234 1.239 0.281 N6 85U 37 85U N7 N8 N 0 1 Y N N 50.640 38.557 126.917 -8.072 2.986 0.882 N7 85U 38 85U N8 N9 N 0 1 N N N 50.955 41.227 125.397 -9.291 5.794 1.162 N8 85U 39 85U N9 N10 N 0 1 Y N N 50.816 42.218 127.481 -11.284 4.724 0.493 N9 85U 40 85U O1 O1 O 0 1 N N N 45.811 25.773 125.748 11.508 -1.389 1.836 O1 85U 41 85U O2 O2 O 0 1 N N N 40.080 24.281 126.659 14.670 2.081 0.031 O2 85U 42 85U O3 O3 O 0 1 N N N 40.958 24.681 124.642 13.415 3.179 -1.434 O3 85U 43 85U O4 O4 O 0 1 N N N 48.569 26.887 129.055 5.356 0.103 -0.108 O4 85U 44 85U O5 O5 O 0 1 N N N 49.385 37.126 133.160 -9.845 -2.628 -2.423 O5 85U 45 85U O6 O6 O 0 1 N N N 47.839 37.817 130.883 -10.804 -0.284 -2.162 O6 85U 46 85U O7 O7 O 0 1 N N N 51.411 37.349 130.884 -8.577 -1.049 0.482 O7 85U 47 85U H5 H1 H 0 1 N N N 42.927 24.607 130.613 8.712 1.813 -2.112 H5 85U 48 85U H9 H2 H 0 1 N N N 38.095 24.664 127.192 16.649 2.689 0.288 H9 85U 49 85U H10 H3 H 0 1 N N N 39.026 26.086 126.611 16.007 2.869 -1.363 H10 85U 50 85U H8 H4 H 0 1 N N N 38.472 24.837 125.444 15.495 3.993 -0.082 H8 85U 51 85U H12 H5 H 0 1 N N N 51.031 25.964 129.158 2.928 -0.864 -0.788 H12 85U 52 85U H13 H6 H 0 1 N N N 51.691 25.412 130.734 2.974 -0.577 0.968 H13 85U 53 85U H15 H7 H 0 1 N N N 52.094 27.872 129.870 2.176 -3.193 -0.388 H15 85U 54 85U H14 H8 H 0 1 N N N 50.443 28.145 130.522 2.223 -2.906 1.368 H14 85U 55 85U H17 H9 H 0 1 N N N 51.088 27.614 132.710 0.537 -1.105 1.118 H17 85U 56 85U H16 H10 H 0 1 N N N 52.598 26.807 132.167 0.490 -1.392 -0.638 H16 85U 57 85U H21 H11 H 0 1 N N N 50.468 34.560 130.248 -7.303 -3.939 -0.833 H21 85U 58 85U H22 H12 H 0 1 N N N 51.591 36.113 132.564 -9.560 -2.842 0.044 H22 85U 59 85U H1 H13 H 0 1 N N N 43.409 25.276 124.744 13.388 0.244 1.138 H1 85U 60 85U H23 H14 H 0 1 N N N 49.031 35.412 132.011 -7.967 -1.749 -2.282 H23 85U 61 85U H25 H15 H 0 1 N N N 49.029 36.441 129.851 -8.838 0.379 -2.047 H25 85U 62 85U H27 H16 H 0 1 N N N 50.129 38.940 131.204 -10.558 -0.403 0.315 H27 85U 63 85U H28 H17 H 0 1 N N N 50.436 36.767 128.001 -7.114 1.106 0.730 H28 85U 64 85U H31 H18 H 0 1 N N N 50.702 43.022 129.363 -13.009 3.744 -0.097 H31 85U 65 85U H33 H19 H 0 1 N N N 53.656 28.871 131.705 -0.261 -3.721 -0.238 H33 85U 66 85U H32 H20 H 0 1 N N N 52.861 29.055 133.305 -0.215 -3.434 1.518 H32 85U 67 85U H34 H21 H 0 1 N N N 53.793 32.983 129.803 -5.206 -4.048 1.750 H34 85U 68 85U H35 H22 H 0 1 N N N 52.317 33.344 128.845 -5.253 -4.334 -0.006 H35 85U 69 85U H36 H23 H 0 1 N N N 53.282 34.778 131.270 -6.651 -1.892 1.311 H36 85U 70 85U H2 H24 H 0 1 N N N 41.569 24.475 128.507 11.066 2.439 -1.723 H2 85U 71 85U H3 H25 H 0 1 N N N 46.916 25.839 127.968 9.123 -1.806 1.256 H3 85U 72 85U H4 H26 H 0 1 N N N 45.054 25.017 131.713 6.812 0.381 -1.601 H4 85U 73 85U H7 H27 H 0 1 N N N 47.348 25.517 131.569 6.881 -2.540 0.362 H7 85U 74 85U H11 H28 H 0 1 N N N 49.525 25.146 131.491 4.563 -2.840 0.393 H11 85U 75 85U H18 H29 H 0 1 N N N 50.978 30.031 131.616 -1.851 -1.458 0.337 H18 85U 76 85U H19 H30 H 0 1 N N N 51.156 31.747 130.073 -4.212 -1.748 0.446 H19 85U 77 85U H20 H31 H 0 1 N N N 53.921 31.038 132.778 -1.758 -4.876 0.892 H20 85U 78 85U H30 H32 H 0 1 N N N 51.040 42.195 125.162 -8.345 5.735 1.368 H30 85U 79 85U H29 H33 H 0 1 N N N 51.775 40.738 125.098 -9.749 6.647 1.224 H29 85U 80 85U H6 H34 H 0 1 N N N 46.531 25.893 126.356 11.291 -1.114 2.738 H6 85U 81 85U H24 H35 H 0 1 N N N 49.690 36.604 133.893 -9.556 -3.548 -2.496 H24 85U 82 85U H26 H36 H 0 1 N N N 47.141 37.182 130.992 -10.828 -0.468 -3.112 H26 85U 83 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 85U O3 C11 DOUB N N 1 85U N8 C25 SING N N 2 85U O1 C3 SING N N 3 85U C2 C3 DOUB Y N 4 85U C2 C1 SING Y N 5 85U C11 C1 SING N N 6 85U C11 O2 SING N N 7 85U C3 C4 SING Y N 8 85U C12 O2 SING N N 9 85U C1 C6 DOUB Y N 10 85U C25 C24 DOUB Y N 11 85U C25 N9 SING Y N 12 85U N7 C24 SING Y N 13 85U N7 C23 DOUB Y N 14 85U C24 C27 SING Y N 15 85U N9 C26 DOUB Y N 16 85U C4 C7 DOUB Y N 17 85U C4 C5 SING Y N 18 85U C6 C5 SING Y N 19 85U C23 N6 SING Y N 20 85U C7 C8 SING Y N 21 85U C5 C10 DOUB Y N 22 85U C27 N6 SING Y N 23 85U C27 N10 DOUB Y N 24 85U C26 N10 SING Y N 25 85U O4 C13 DOUB N N 26 85U N6 C22 SING N N 27 85U C29 N4 SING N N 28 85U C29 C30 SING N N 29 85U C8 N1 SING N N 30 85U C8 C9 DOUB Y N 31 85U C10 C9 SING Y N 32 85U C13 N1 SING N N 33 85U C13 N2 SING N N 34 85U C14 C15 SING N N 35 85U C14 N2 SING N N 36 85U N4 C17 SING N N 37 85U C22 C21 SING N N 38 85U C22 O7 SING N N 39 85U C15 C16 SING N N 40 85U C21 O6 SING N N 41 85U C21 C20 SING N N 42 85U C30 C18 DOUB N E 43 85U C18 C19 SING N N 44 85U O7 C19 SING N N 45 85U C17 N3 SING N N 46 85U C17 N5 DOUB N N 47 85U C19 C20 SING N N 48 85U N3 C28 SING N N 49 85U C20 O5 SING N N 50 85U C16 C28 SING N N 51 85U C10 H5 SING N N 52 85U C12 H9 SING N N 53 85U C12 H10 SING N N 54 85U C12 H8 SING N N 55 85U C14 H12 SING N N 56 85U C14 H13 SING N N 57 85U C15 H15 SING N N 58 85U C15 H14 SING N N 59 85U C16 H17 SING N N 60 85U C16 H16 SING N N 61 85U C18 H21 SING N N 62 85U C19 H22 SING N N 63 85U C2 H1 SING N N 64 85U C20 H23 SING N N 65 85U C21 H25 SING N N 66 85U C22 H27 SING N N 67 85U C23 H28 SING N N 68 85U C26 H31 SING N N 69 85U C28 H33 SING N N 70 85U C28 H32 SING N N 71 85U C29 H34 SING N N 72 85U C29 H35 SING N N 73 85U C30 H36 SING N N 74 85U C6 H2 SING N N 75 85U C7 H3 SING N N 76 85U C9 H4 SING N N 77 85U N1 H7 SING N N 78 85U N2 H11 SING N N 79 85U N3 H18 SING N N 80 85U N4 H19 SING N N 81 85U N5 H20 SING N N 82 85U N8 H30 SING N N 83 85U N8 H29 SING N N 84 85U O1 H6 SING N N 85 85U O5 H24 SING N N 86 85U O6 H26 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 85U InChI InChI 1.06 "InChI=1S/C30H36N10O7/c1-46-28(44)17-11-16-6-7-18(13-19(16)20(41)12-17)39-30(45)35-9-3-2-8-33-29(32)34-10-4-5-21-23(42)24(43)27(47-21)40-15-38-22-25(31)36-14-37-26(22)40/h4-7,11-15,21,23-24,27,41-43H,2-3,8-10H2,1H3,(H2,31,36,37)(H3,32,33,34)(H2,35,39,45)/b5-4+/t21-,23-,24-,27-/m1/s1" 85U InChIKey InChI 1.06 JYIRWTZMMGLPFI-HMZLUZKYSA-N 85U SMILES_CANONICAL CACTVS 3.385 "COC(=O)c1cc(O)c2cc(NC(=O)NCCCCNC(=N)NC\C=C\[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)ccc2c1" 85U SMILES CACTVS 3.385 "COC(=O)c1cc(O)c2cc(NC(=O)NCCCCNC(=N)NCC=C[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)ccc2c1" 85U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\NCCCCNC(=O)Nc1ccc2cc(cc(c2c1)O)C(=O)OC)/NC/C=C/[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O" 85U SMILES "OpenEye OEToolkits" 2.0.7 "COC(=O)c1cc2ccc(cc2c(c1)O)NC(=O)NCCCCNC(=N)NCC=CC3C(C(C(O3)n4cnc5c4ncnc5N)O)O" # _pdbx_chem_comp_identifier.comp_id 85U _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "methyl 6-[4-[[~{N}-[(~{E})-3-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]prop-2-enyl]carbamimidoyl]amino]butylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 85U "Create component" 2021-10-04 PDBE 85U "Initial release" 2022-04-06 RCSB 85U "Modify descriptor" 2022-08-22 RCSB #