data_85W # _chem_comp.id 85W _chem_comp.name "5-oxidanyl-2-[4,5,7-tris(oxidanyl)naphthalen-2-yl]-1H-pyrimidin-6-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H10 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "5-oxidanyl-2-[4,5,7-tris(oxidanyl)naphthalen-2-yl]-1~{H}-pyrimidin-6-one" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-10 _chem_comp.pdbx_modified_date 2025-01-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 286.240 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 85W _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PPX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 85W N1 N1 N 0 1 N N N N N N 27.491 14.711 6.243 2.393 1.441 0.006 N1 85W 1 85W C4 C1 C 0 1 Y N N N N N 28.142 15.942 8.193 0.495 -0.049 0.009 C4 85W 2 85W C5 C2 C 0 1 Y N N N N N 27.717 16.599 9.343 -0.386 1.021 0.015 C5 85W 3 85W C6 C3 C 0 1 Y N N N N N 28.592 16.857 10.417 -1.768 0.779 0.014 C6 85W 4 85W C7 C4 C 0 1 Y N N N N N 28.166 17.526 11.595 -2.690 1.841 0.020 C7 85W 5 85W C8 C5 C 0 1 Y N N N N N 29.047 17.762 12.617 -4.039 1.571 0.018 C8 85W 6 85W C10 C6 C 0 1 Y N N N N N 30.830 16.679 11.392 -3.632 -0.797 0.004 C10 85W 7 85W C13 C7 C 0 1 Y N N N N N 29.471 15.528 8.097 0.015 -1.369 0.001 C13 85W 8 85W O1 O1 O 0 1 N N N N N N 24.626 15.191 3.953 5.944 0.968 -0.010 O1 85W 9 85W C1 C8 C 0 1 N N N N N N 25.574 15.296 4.935 4.610 0.700 -0.005 C1 85W 10 85W C2 C9 C 0 1 N N N N N N 26.679 14.502 5.195 3.697 1.715 0.002 C2 85W 11 85W C3 C10 C 0 1 N N N N N N 27.199 15.716 7.068 1.951 0.202 0.004 C3 85W 12 85W O2 O2 O 0 1 N N N N N N 28.608 18.428 13.747 -4.929 2.598 0.023 O2 85W 13 85W C9 C11 C 0 1 Y N N N N N 30.386 17.335 12.521 -4.504 0.254 0.010 C9 85W 14 85W O3 O3 O 0 1 N N N N N N 32.128 16.246 11.276 -4.102 -2.071 -0.004 O3 85W 15 85W C11 C12 C 0 1 Y N N N N N 29.946 16.431 10.304 -2.244 -0.556 0.006 C11 85W 16 85W C12 C13 C 0 1 Y N N N N N 30.356 15.753 9.120 -1.324 -1.625 -0.001 C12 85W 17 85W O4 O4 O 0 1 N N N N N N 31.666 15.319 9.032 -1.771 -2.907 -0.010 O4 85W 18 85W N2 N2 N 0 1 N N N N N N 26.115 16.547 6.862 2.812 -0.856 -0.003 N2 85W 19 85W C14 C14 C 0 1 N N N N N N 25.257 16.365 5.809 4.145 -0.636 -0.008 C14 85W 20 85W O5 O5 O 0 1 N N N N N N 24.242 17.077 5.631 4.930 -1.569 -0.014 O5 85W 21 85W H1 H1 H 0 1 N N N N N N 26.688 16.920 9.415 -0.012 2.034 0.022 H1 85W 22 85W H2 H2 H 0 1 N N N N N N 27.140 17.851 11.686 -2.340 2.863 0.026 H2 85W 23 85W H3 H3 H 0 1 N N N N N N 29.808 15.023 7.204 0.715 -2.192 -0.005 H3 85W 24 85W H4 H4 H 0 1 N N N N N N 23.967 15.865 4.075 6.155 1.911 -0.008 H4 85W 25 85W H5 H5 H 0 1 N N N N N N 26.896 13.681 4.527 4.032 2.742 0.004 H5 85W 26 85W H6 H6 H 0 1 N N N N N N 29.326 18.516 14.362 -5.187 2.900 -0.858 H6 85W 27 85W H7 H7 H 0 1 N N N N N N 31.069 17.522 13.336 -5.568 0.064 0.009 H7 85W 28 85W H8 H8 H 0 1 N N N N N N 32.609 16.472 12.063 -4.238 -2.434 -0.890 H8 85W 29 85W H9 H9 H 0 1 N N N N N N 32.133 15.558 9.824 -1.901 -3.284 0.871 H9 85W 30 85W H10 H10 H 0 1 N N N N N N 25.952 17.301 7.498 2.469 -1.763 -0.005 H10 85W 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 85W O1 C1 SING N N 1 85W C1 C2 DOUB N N 2 85W C1 C14 SING N N 3 85W C2 N1 SING N N 4 85W O5 C14 DOUB N N 5 85W C14 N2 SING N N 6 85W N1 C3 DOUB N N 7 85W N2 C3 SING N N 8 85W C3 C4 SING N N 9 85W C13 C4 SING Y N 10 85W C13 C12 DOUB Y N 11 85W C4 C5 DOUB Y N 12 85W O4 C12 SING N N 13 85W C12 C11 SING Y N 14 85W C5 C6 SING Y N 15 85W C11 C6 DOUB Y N 16 85W C11 C10 SING Y N 17 85W C6 C7 SING Y N 18 85W O3 C10 SING N N 19 85W C10 C9 DOUB Y N 20 85W C7 C8 DOUB Y N 21 85W C9 C8 SING Y N 22 85W C8 O2 SING N N 23 85W C5 H1 SING N N 24 85W C7 H2 SING N N 25 85W C13 H3 SING N N 26 85W O1 H4 SING N N 27 85W C2 H5 SING N N 28 85W O2 H6 SING N N 29 85W C9 H7 SING N N 30 85W O3 H8 SING N N 31 85W O4 H9 SING N N 32 85W N2 H10 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 85W InChI InChI 1.06 "InChI=1S/C14H10N2O5/c17-8-2-6-1-7(3-9(18)12(6)10(19)4-8)13-15-5-11(20)14(21)16-13/h1-5,17-20H,(H,15,16,21)" 85W InChIKey InChI 1.06 ZRYLCHISGNOMOQ-UHFFFAOYSA-N 85W SMILES_CANONICAL CACTVS 3.385 "Oc1cc(O)c2c(O)cc(cc2c1)C3=NC=C(O)C(=O)N3" 85W SMILES CACTVS 3.385 "Oc1cc(O)c2c(O)cc(cc2c1)C3=NC=C(O)C(=O)N3" 85W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c2cc(cc(c2c(cc1C3=NC=C(C(=O)N3)O)O)O)O" 85W SMILES "OpenEye OEToolkits" 2.0.7 "c1c2cc(cc(c2c(cc1C3=NC=C(C(=O)N3)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id 85W _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-oxidanyl-2-[4,5,7-tris(oxidanyl)naphthalen-2-yl]-1~{H}-pyrimidin-6-one" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 85W _pdbx_chem_comp_synonyms.name "5-oxidanyl-2-[4,5,7-tris(oxidanyl)naphthalen-2-yl]-1~{H}-pyrimidin-6-one" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 85W "Create component" 2023-07-13 PDBE 85W "Modify synonyms" 2023-10-18 PDBE 85W "Initial release" 2025-01-15 RCSB #