data_868 # _chem_comp.id 868 _chem_comp.name "S-[2-[3-[[(2S)-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (2R)-2-azanylpropanethioate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H28 N3 O8 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-03-02 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 429.426 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 868 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7X17 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 868 N1 N1 N 0 1 N N N N N N -7.931 22.337 30.513 -10.901 1.574 -0.769 N1 868 1 868 N3 N2 N 0 1 N N N N N N -7.596 28.734 21.625 1.196 -0.833 -0.665 N3 868 2 868 C4 C1 C 0 1 N N N N N N -9.335 25.656 26.955 -6.062 0.203 -0.173 C4 868 3 868 C5 C2 C 0 1 N N N N N N -10.080 25.759 25.627 -4.940 -0.767 0.201 C5 868 4 868 C6 C3 C 0 1 N N N N N N -9.900 27.933 24.361 -2.523 -0.931 -0.063 C6 868 5 868 C7 C4 C 0 1 N N N N N N -8.910 28.841 23.574 -1.206 -0.390 -0.558 C7 868 6 868 C8 C5 C 0 1 N N N N N N -8.985 28.544 22.084 -0.083 -1.359 -0.184 C8 868 7 868 C10 C6 C 0 1 N N S N N N -8.117 30.413 19.800 3.633 -1.041 -1.039 C10 868 8 868 C13 C7 C 0 1 N N N N N N -7.151 29.296 17.717 4.951 -1.802 0.942 C13 868 9 868 O6 O1 O 0 1 N N N N N N -5.486 34.045 16.956 7.912 2.559 -0.456 O6 868 10 868 P1 P1 P 0 1 N N N N N N -6.246 33.333 15.927 8.135 1.134 0.260 P1 868 11 868 O7 O2 O 0 1 N N N N N N -5.527 32.855 14.748 8.948 0.262 -0.619 O7 868 12 868 O8 O3 O 0 1 N N N N N N -7.648 33.730 15.772 8.902 1.350 1.659 O8 868 13 868 O5 O4 O 0 1 N N N N N N -6.440 31.860 16.689 6.708 0.440 0.531 O5 868 14 868 C14 C8 C 0 1 N N N N N N -6.640 31.730 18.097 5.833 0.023 -0.519 C14 868 15 868 C11 C9 C 0 1 N N N N N N -7.701 30.611 18.303 4.569 -0.594 0.085 C11 868 16 868 C12 C10 C 0 1 N N N N N N -8.986 30.973 17.546 3.861 0.446 0.956 C12 868 17 868 O4 O5 O 0 1 N N N N N N -8.267 31.700 20.414 3.378 0.061 -1.913 O4 868 18 868 C9 C11 C 0 1 N N N N N N -7.122 29.540 20.623 2.333 -1.524 -0.448 C9 868 19 868 O3 O6 O 0 1 N N N N N N -5.919 29.585 20.363 2.311 -2.534 0.222 O3 868 20 868 O2 O7 O 0 1 N N N N N N -11.053 28.302 24.572 -2.559 -1.989 0.530 O2 868 21 868 N2 N3 N 0 1 N N N N N N -9.372 26.770 24.832 -3.660 -0.240 -0.280 N2 868 22 868 S1 S1 S 0 1 N N N N N N -10.325 24.680 28.199 -7.644 -0.447 0.421 S1 868 23 868 C3 C12 C 0 1 N N N N N N -9.145 24.218 29.473 -8.695 0.793 -0.113 C3 868 24 868 O1 O8 O 0 1 N N N N N N -9.003 24.844 30.524 -8.249 1.751 -0.711 O1 868 25 868 C2 C13 C 0 1 N N R N N N -8.338 22.927 29.221 -10.174 0.696 0.158 C2 868 26 868 C1 C14 C 0 1 N N N N N N -7.103 23.215 28.353 -10.458 1.129 1.598 C1 868 27 868 H1 H1 H 0 1 N N N N N N -8.743 22.155 31.067 -11.898 1.479 -0.651 H1 868 28 868 H2 H2 H 0 1 N N N N N N -7.441 21.481 30.349 -10.614 2.535 -0.657 H2 868 29 868 H4 H4 H 0 1 N N N N N N -6.905 28.201 22.112 1.226 0.013 -1.139 H4 868 30 868 H5 H5 H 0 1 N N N N N N -8.370 25.154 26.789 -5.873 1.173 0.287 H5 868 31 868 H6 H6 H 0 1 N N N N N N -9.159 26.668 27.349 -6.100 0.316 -1.256 H6 868 32 868 H7 H7 H 0 1 N N N N N N -11.121 26.070 25.798 -4.902 -0.879 1.284 H7 868 33 868 H8 H8 H 0 1 N N N N N N -10.068 24.789 25.108 -5.129 -1.737 -0.259 H8 868 34 868 H9 H9 H 0 1 N N N N N N -7.886 28.654 23.929 -1.244 -0.277 -1.641 H9 868 35 868 H10 H10 H 0 1 N N N N N N -9.171 29.896 23.747 -1.017 0.580 -0.098 H10 868 36 868 H11 H11 H 0 1 N N N N N N -9.666 29.244 21.577 -0.273 -2.329 -0.644 H11 868 37 868 H12 H12 H 0 1 N N N N N N -9.321 27.512 21.905 -0.046 -1.472 0.899 H12 868 38 868 H13 H13 H 0 1 N N N N N N -9.089 29.898 19.805 4.100 -1.850 -1.601 H13 868 39 868 H14 H14 H 0 1 N N N N N N -6.228 29.016 18.246 5.705 -1.507 1.671 H14 868 40 868 H15 H15 H 0 1 N N N N N N -7.899 28.499 17.839 4.067 -2.172 1.463 H15 868 41 868 H16 H16 H 0 1 N N N N N N -6.934 29.434 16.648 5.351 -2.589 0.303 H16 868 42 868 H17 H17 H 0 1 N N N N N N -4.574 34.100 16.696 7.386 3.182 0.064 H17 868 43 868 H18 H18 H 0 1 N N N N N N -7.912 33.614 14.867 9.771 1.764 1.571 H18 868 44 868 H19 H19 H 0 1 N N N N N N -5.696 31.451 18.589 5.561 0.884 -1.129 H19 868 45 868 H20 H20 H 0 1 N N N N N N -7.005 32.679 18.516 6.338 -0.718 -1.139 H20 868 46 868 H21 H21 H 0 1 N N N N N N -9.397 31.911 17.948 4.528 0.765 1.757 H21 868 47 868 H22 H22 H 0 1 N N N N N N -8.758 31.101 16.478 3.589 1.307 0.345 H22 868 48 868 H23 H23 H 0 1 N N N N N N -9.724 30.166 17.669 2.961 0.007 1.386 H23 868 49 868 H24 H24 H 0 1 N N N N N N -8.520 31.590 21.323 2.962 0.819 -1.480 H24 868 50 868 H25 H25 H 0 1 N N N N N N -8.413 26.587 24.616 -3.631 0.605 -0.754 H25 868 51 868 H26 H26 H 0 1 N N N N N N -8.982 22.215 28.685 -10.503 -0.333 0.016 H26 868 52 868 H27 H27 H 0 1 N N N N N N -6.545 22.282 28.187 -10.130 2.158 1.740 H27 868 53 868 H28 H28 H 0 1 N N N N N N -7.424 23.627 27.385 -11.528 1.059 1.794 H28 868 54 868 H29 H29 H 0 1 N N N N N N -6.456 23.943 28.865 -9.919 0.477 2.286 H29 868 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 868 O7 P1 DOUB N N 1 868 O8 P1 SING N N 2 868 P1 O5 SING N N 3 868 P1 O6 SING N N 4 868 O5 C14 SING N N 5 868 C12 C11 SING N N 6 868 C13 C11 SING N N 7 868 C14 C11 SING N N 8 868 C11 C10 SING N N 9 868 C10 O4 SING N N 10 868 C10 C9 SING N N 11 868 O3 C9 DOUB N N 12 868 C9 N3 SING N N 13 868 N3 C8 SING N N 14 868 C8 C7 SING N N 15 868 C7 C6 SING N N 16 868 C6 O2 DOUB N N 17 868 C6 N2 SING N N 18 868 N2 C5 SING N N 19 868 C5 C4 SING N N 20 868 C4 S1 SING N N 21 868 S1 C3 SING N N 22 868 C1 C2 SING N N 23 868 C2 C3 SING N N 24 868 C2 N1 SING N N 25 868 C3 O1 DOUB N N 26 868 N1 H1 SING N N 27 868 N1 H2 SING N N 28 868 N3 H4 SING N N 29 868 C4 H5 SING N N 30 868 C4 H6 SING N N 31 868 C5 H7 SING N N 32 868 C5 H8 SING N N 33 868 C7 H9 SING N N 34 868 C7 H10 SING N N 35 868 C8 H11 SING N N 36 868 C8 H12 SING N N 37 868 C10 H13 SING N N 38 868 C13 H14 SING N N 39 868 C13 H15 SING N N 40 868 C13 H16 SING N N 41 868 O6 H17 SING N N 42 868 O8 H18 SING N N 43 868 C14 H19 SING N N 44 868 C14 H20 SING N N 45 868 C12 H21 SING N N 46 868 C12 H22 SING N N 47 868 C12 H23 SING N N 48 868 O4 H24 SING N N 49 868 N2 H25 SING N N 50 868 C2 H26 SING N N 51 868 C1 H27 SING N N 52 868 C1 H28 SING N N 53 868 C1 H29 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 868 InChI InChI 1.03 "InChI=1S/C14H28N3O8PS/c1-9(15)13(21)27-7-6-16-10(18)4-5-17-12(20)11(19)14(2,3)8-25-26(22,23)24/h9,11,19H,4-8,15H2,1-3H3,(H,16,18)(H,17,20)(H2,22,23,24)/t9-,11-/m1/s1" 868 InChIKey InChI 1.03 YOANCVNRLJJRIX-MWLCHTKSSA-N 868 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](N)C(=O)SCCNC(=O)CCNC(=O)[C@@H](O)C(C)(C)CO[P](O)(O)=O" 868 SMILES CACTVS 3.385 "C[CH](N)C(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(O)=O" 868 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](C(=O)SCCNC(=O)CCNC(=O)[C@H](C(C)(C)COP(=O)(O)O)O)N" 868 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)O)O)N" # _pdbx_chem_comp_identifier.comp_id 868 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{S}-[2-[3-[[(2~{S})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-azanylpropanethioate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 868 "Create component" 2022-03-02 PDBJ 868 "Initial release" 2022-07-13 RCSB 868 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 868 _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom P1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #