data_86F # _chem_comp.id 86F _chem_comp.name "(3~{S})-1-(iminomethyl)-~{N}-pent-4-ynyl-pyrrolidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H19 N3 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-10 _chem_comp.pdbx_modified_date 2024-01-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 253.364 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 86F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PPW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 86F C13 C1 C 0 1 N N N N N N -19.035 15.294 -6.495 5.767 0.256 0.355 C13 86F 1 86F C15 C2 C 0 1 N N N N N N -16.493 16.096 -6.411 7.281 2.345 -0.231 C15 86F 2 86F C17 C3 C 0 1 N N N N N N -19.279 13.916 0.255 -0.877 0.072 0.100 C17 86F 3 86F C02 C4 C 0 1 N N N N N N -17.664 14.313 2.234 -3.298 0.826 0.074 C02 86F 4 86F C06 C5 C 0 1 N N N N N N -17.141 12.708 0.285 -2.581 -1.597 -0.092 C06 86F 5 86F C07 C6 C 0 1 N N N N N N -18.200 11.855 -0.423 -1.207 -2.297 -0.126 C07 86F 6 86F C08 C7 C 0 1 N N S N N N -19.271 12.872 -0.882 -0.251 -1.166 -0.590 C08 86F 7 86F C09 C8 C 0 1 N N N N N N -18.715 13.643 -2.171 1.152 -1.408 -0.097 C09 86F 8 86F C11 C9 C 0 1 N N N N N N -18.070 13.574 -4.713 3.467 -0.707 0.194 C11 86F 9 86F C12 C10 C 0 1 N N N N N N -19.198 13.901 -5.771 4.343 0.501 -0.145 C12 86F 10 86F C14 C11 C 0 1 N N N N N N -17.631 15.749 -6.451 6.609 1.418 0.029 C14 86F 11 86F N01 N1 N 0 1 N N N N N N -18.470 15.124 2.789 -2.952 2.079 0.185 N01 86F 12 86F N05 N2 N 0 1 N N N N N N -18.016 13.692 1.004 -2.332 -0.153 0.031 N05 86F 13 86F N10 N3 N 0 1 N N N N N N -18.589 12.954 -3.443 2.103 -0.472 -0.286 N10 86F 14 86F O16 O1 O 0 1 N N N N N N -18.360 14.798 -2.042 1.425 -2.444 0.470 O16 86F 15 86F H132 H1 H 0 0 N N N N N N -19.348 15.193 -7.545 5.753 0.109 1.435 H132 86F 16 86F H131 H2 H 0 0 N N N N N N -19.671 16.038 -5.992 6.174 -0.634 -0.126 H131 86F 17 86F H151 H3 H 0 0 N N N N N N -15.480 16.405 -6.375 7.881 3.174 -0.464 H151 86F 18 86F H171 H4 H 0 0 N N N N N N -19.306 14.935 -0.158 -0.552 0.132 1.139 H171 86F 19 86F H172 H5 H 0 0 N N N N N N -20.148 13.763 0.912 -0.606 0.982 -0.435 H172 86F 20 86F H061 H7 H 0 0 N N N N N N -16.475 13.207 -0.434 -3.125 -1.802 -1.014 H061 86F 21 86F H062 H8 H 0 0 N N N N N N -16.541 12.110 0.987 -3.158 -1.948 0.764 H062 86F 22 86F H072 H9 H 0 0 N N N N N N -17.764 11.332 -1.287 -0.930 -2.653 0.866 H072 86F 23 86F H071 H10 H 0 0 N N N N N N -18.634 11.119 0.270 -1.211 -3.120 -0.842 H071 86F 24 86F H081 H11 H 0 0 N N N N N N -20.256 12.415 -1.059 -0.270 -1.059 -1.674 H081 86F 25 86F H111 H12 H 0 0 N N N N N N -17.554 14.511 -4.456 3.874 -1.597 -0.288 H111 86F 26 86F H112 H13 H 0 0 N N N N N N -17.355 12.876 -5.173 3.453 -0.853 1.274 H112 86F 27 86F H122 H14 H 0 0 N N N N N N -19.188 13.112 -6.538 3.937 1.391 0.336 H122 86F 28 86F H121 H15 H 0 0 N N N N N N -20.168 13.896 -5.252 4.357 0.647 -1.225 H121 86F 29 86F H011 H16 H 0 0 N N N N N N -18.240 15.282 3.749 -3.632 2.769 0.215 H011 86F 30 86F H101 H17 H 0 0 N N N N N N -18.868 11.994 -3.478 1.885 0.357 -0.739 H101 86F 31 86F S1 S1 S 0 1 N N N N N N ? ? ? -5.002 0.388 -0.022 S1 86F 32 86F C2 C12 C 0 1 N N N N N N ? ? ? -5.755 2.031 0.081 C2 86F 33 86F H1 H17 H 0 1 N N N N N N ? ? ? -5.471 2.503 1.022 H1 86F 34 86F H2 H18 H 0 1 N N N N N N ? ? ? -5.407 2.642 -0.752 H2 86F 35 86F H3 H19 H 0 1 N N N N N N ? ? ? -6.840 1.937 0.035 H3 86F 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 86F C02 N01 DOUB N N 1 86F N05 C02 SING N N 2 86F C06 N05 SING N N 3 86F C07 C06 SING N N 4 86F C08 C07 SING N N 5 86F C11 N10 SING N N 6 86F C12 C11 SING N N 7 86F C13 C12 SING N N 8 86F C14 C13 SING N N 9 86F C15 C14 TRIP N N 10 86F N10 C09 SING N N 11 86F O16 C09 DOUB N N 12 86F C09 C08 SING N N 13 86F C17 C08 SING N N 14 86F N05 C17 SING N N 15 86F C13 H132 SING N N 16 86F C13 H131 SING N N 17 86F C15 H151 SING N N 18 86F C17 H171 SING N N 19 86F C17 H172 SING N N 20 86F C06 H061 SING N N 21 86F C06 H062 SING N N 22 86F C07 H072 SING N N 23 86F C07 H071 SING N N 24 86F C08 H081 SING N N 25 86F C11 H111 SING N N 26 86F C11 H112 SING N N 27 86F C12 H122 SING N N 28 86F C12 H121 SING N N 29 86F N01 H011 SING N N 30 86F N10 H101 SING N N 31 86F C02 S1 SING N N 32 86F S1 C2 SING N N 33 86F C2 H1 SING N N 34 86F C2 H2 SING N N 35 86F C2 H3 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 86F InChI InChI 1.06 "InChI=1S/C12H19N3OS/c1-3-4-5-7-14-11(16)10-6-8-15(9-10)12(13)17-2/h1,10,13H,4-9H2,2H3,(H,14,16)/b13-12-/t10-/m0/s1" 86F InChIKey InChI 1.06 WCNBRLZMISSXRP-AGKQBQDBSA-N 86F SMILES_CANONICAL CACTVS 3.385 "CSC(=N)N1CC[C@@H](C1)C(=O)NCCCC#C" 86F SMILES CACTVS 3.385 "CSC(=N)N1CC[CH](C1)C(=O)NCCCC#C" 86F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N1CC[C@@H](C1)C(=O)NCCCC#C)\SC" 86F SMILES "OpenEye OEToolkits" 2.0.7 "CSC(=N)N1CCC(C1)C(=O)NCCCC#C" # _pdbx_chem_comp_identifier.comp_id 86F _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "methyl (3~{S})-3-(pent-4-ynylcarbamoyl)pyrrolidine-1-carboximidothioate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 86F "Create component" 2023-07-13 EBI 86F "Initial release" 2024-01-31 RCSB #