data_87Q # _chem_comp.id 87Q _chem_comp.name "Z-7-[(1R,2R,3R,5S)-2-[(E,3S)-3-methyl-3-oxidanyl-oct-1-enyl]-3,5-bis(oxidanyl)cyclopentyl]hept-5-enoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H36 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "7-[3,5-Dihydroxy-2-(3-hydroxy-3-methyloct-1-enyl)cyclopentyl]hept-5-enoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-22 _chem_comp.pdbx_modified_date 2024-01-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 368.508 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 87Q _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8IQ4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 87Q C10 C1 C 0 1 N N N N N N 130.774 134.211 169.768 -1.237 -1.419 -0.338 C10 87Q 1 87Q C13 C2 C 0 1 N N N N N N 130.104 132.998 172.796 2.108 -1.584 0.072 C13 87Q 2 87Q C15 C3 C 0 1 N N N N N N 130.125 131.773 174.917 3.853 -0.581 -1.311 C15 87Q 3 87Q C17 C4 C 0 1 N N N N N N 128.862 132.846 176.829 4.550 1.602 -0.365 C17 87Q 4 87Q C22 C5 C 0 1 N N S N N N 128.487 131.653 171.421 1.445 -3.981 -0.301 C22 87Q 5 87Q C24 C6 C 0 1 N N N N N N 127.780 131.922 170.076 0.403 -4.650 0.618 C24 87Q 6 87Q C01 C7 C 0 1 N N N N N N 136.393 137.210 173.674 -8.359 2.926 0.614 C01 87Q 7 87Q C02 C8 C 0 1 N N N N N N 135.530 136.234 172.844 -7.087 2.777 -0.223 C02 87Q 8 87Q C03 C9 C 0 1 N N N N N N 134.517 136.972 171.935 -6.111 1.842 0.494 C03 87Q 9 87Q C04 C10 C 0 1 N N N N N N 133.550 135.991 171.215 -4.840 1.692 -0.344 C04 87Q 10 87Q C05 C11 C 0 1 N N N N N N 133.529 136.209 169.677 -3.863 0.758 0.373 C05 87Q 11 87Q C06 C12 C 0 1 N N S N N N 132.909 135.026 168.910 -2.592 0.608 -0.464 C06 87Q 12 87Q C07 C13 C 0 1 N N N N N N 133.392 133.707 169.519 -1.940 1.980 -0.651 C07 87Q 13 87Q C09 C14 C 0 1 N N N N N N 131.372 135.126 168.973 -1.630 -0.312 0.242 C09 87Q 14 87Q C11 C15 C 0 1 N N R N N N 129.501 133.598 170.380 -0.275 -2.339 0.368 C11 87Q 15 87Q C12 C16 C 0 1 N N R N N N 129.801 132.456 171.389 1.014 -2.512 -0.460 C12 87Q 16 87Q C14 C17 C 0 1 N N N N N N 130.655 131.829 173.675 3.320 -1.673 -0.819 C14 87Q 17 87Q C16 C18 C 0 1 N N N N N N 129.070 132.839 175.291 3.364 0.768 -0.852 C16 87Q 18 87Q C18 C19 C 0 1 N N N N N N 127.489 132.244 177.208 4.054 2.973 0.100 C18 87Q 19 87Q C19 C20 C 0 1 N N N N N N 126.496 133.318 177.676 5.223 3.794 0.580 C19 87Q 20 87Q C25 C21 C 0 1 N N R N N N 128.706 132.867 169.290 -0.863 -3.771 0.460 C25 87Q 21 87Q O08 O1 O 0 1 N N N N N N 133.306 135.078 167.578 -2.924 0.060 -1.741 O08 87Q 22 87Q O20 O2 O 0 1 N N N N N N 125.740 133.092 178.661 5.024 5.040 1.038 O20 87Q 23 87Q O21 O3 O 0 1 N N N N N N 126.437 134.422 177.071 6.338 3.331 0.552 O21 87Q 24 87Q O23 O4 O 0 1 N N N N N N 127.652 132.106 172.510 2.741 -4.049 0.297 O23 87Q 25 87Q O26 O5 O 0 1 N N N N N N 127.958 133.776 168.540 -1.713 -3.898 1.602 O26 87Q 26 87Q H1 H1 H 0 1 N N N N N N 131.585 133.622 170.171 -1.605 -1.673 -1.321 H1 87Q 27 87Q H3 H3 H 0 1 N N N N N N 130.856 133.798 172.730 1.740 -0.558 0.084 H3 87Q 28 87Q H4 H4 H 0 1 N N N N N N 129.183 133.397 173.246 2.379 -1.885 1.084 H4 87Q 29 87Q H5 H5 H 0 1 N N N N N N 130.427 131.012 175.622 4.642 -0.649 -2.044 H5 87Q 30 87Q H7 H7 H 0 1 N N N N N N 129.658 132.252 177.302 5.037 1.091 0.465 H7 87Q 31 87Q H8 H8 H 0 1 N N N N N N 128.913 133.883 177.194 5.262 1.732 -1.181 H8 87Q 32 87Q H9 H9 H 0 1 N N N N N N 128.710 130.580 171.514 1.457 -4.474 -1.273 H9 87Q 33 87Q H10 H10 H 0 1 N N N N N N 126.803 132.399 170.246 0.203 -5.670 0.289 H10 87Q 34 87Q H11 H11 H 0 1 N N N N N N 127.637 130.981 169.525 0.747 -4.645 1.652 H11 87Q 35 87Q H12 H12 H 0 1 N N N N N N 137.094 136.639 174.301 -9.054 3.592 0.103 H12 87Q 36 87Q H13 H13 H 0 1 N N N N N N 136.959 137.866 172.996 -8.823 1.949 0.748 H13 87Q 37 87Q H14 H14 H 0 1 N N N N N N 135.741 137.821 174.316 -8.105 3.344 1.589 H14 87Q 38 87Q H15 H15 H 0 1 N N N N N N 134.976 135.579 173.532 -7.341 2.359 -1.198 H15 87Q 39 87Q H16 H16 H 0 1 N N N N N N 136.193 135.625 172.212 -6.623 3.754 -0.357 H16 87Q 40 87Q H17 H17 H 0 1 N N N N N N 135.072 137.543 171.176 -5.858 2.260 1.468 H17 87Q 41 87Q H18 H18 H 0 1 N N N N N N 133.925 137.663 172.553 -6.575 0.865 0.627 H18 87Q 42 87Q H19 H19 H 0 1 N N N N N N 132.534 136.143 171.608 -5.093 1.275 -1.318 H19 87Q 43 87Q H20 H20 H 0 1 N N N N N N 133.873 134.960 171.422 -4.375 2.670 -0.477 H20 87Q 44 87Q H21 H21 H 0 1 N N N N N N 134.563 136.349 169.329 -3.610 1.176 1.348 H21 87Q 45 87Q H22 H22 H 0 1 N N N N N N 132.943 137.114 169.459 -4.328 -0.219 0.507 H22 87Q 46 87Q H23 H23 H 0 1 N N N N N N 133.083 133.655 170.574 -1.034 1.873 -1.248 H23 87Q 47 87Q H24 H24 H 0 1 N N N N N N 132.951 132.865 168.966 -2.636 2.646 -1.163 H24 87Q 48 87Q H25 H25 H 0 1 N N N N N N 134.489 133.654 169.455 -1.687 2.398 0.323 H25 87Q 49 87Q H26 H26 H 0 1 N N N N N N 130.815 135.871 168.424 -1.266 -0.060 1.227 H26 87Q 50 87Q H28 H28 H 0 1 N N N N N N 128.885 134.377 170.854 -0.042 -1.956 1.362 H28 87Q 51 87Q H29 H29 H 0 1 N N N N N N 130.630 131.830 171.027 0.816 -2.293 -1.510 H29 87Q 52 87Q H30 H30 H 0 1 N N N N N N 131.395 131.127 173.321 3.749 -2.636 -1.053 H30 87Q 53 87Q H32 H32 H 0 1 N N N N N N 129.418 133.830 174.964 2.876 1.280 -1.682 H32 87Q 54 87Q H33 H33 H 0 1 N N N N N N 128.118 132.602 174.794 2.652 0.639 -0.037 H33 87Q 55 87Q H34 H34 H 0 1 N N N N N N 127.071 131.734 176.328 3.566 3.484 -0.730 H34 87Q 56 87Q H35 H35 H 0 1 N N N N N N 127.633 131.516 178.020 3.342 2.843 0.915 H35 87Q 57 87Q H36 H36 H 0 1 N N N N N N 129.390 132.279 168.660 -1.399 -4.027 -0.453 H36 87Q 58 87Q H37 H37 H 0 1 N N N N N N 134.253 135.017 167.527 -3.342 -0.811 -1.699 H37 87Q 59 87Q H38 H38 H 0 1 N N N N N N 125.189 133.850 178.818 5.805 5.528 1.334 H38 87Q 60 87Q H39 H39 H 0 1 N N N N N N 128.090 131.939 173.336 3.065 -4.950 0.434 H39 87Q 61 87Q H40 H40 H 0 1 N N N N N N 128.544 134.351 168.062 -2.042 -4.796 1.749 H40 87Q 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 87Q O08 C06 SING N N 1 87Q O26 C25 SING N N 2 87Q C06 C09 SING N N 3 87Q C06 C07 SING N N 4 87Q C06 C05 SING N N 5 87Q C09 C10 DOUB N E 6 87Q C25 C24 SING N N 7 87Q C25 C11 SING N N 8 87Q C05 C04 SING N N 9 87Q C10 C11 SING N N 10 87Q C24 C22 SING N N 11 87Q C11 C12 SING N N 12 87Q C04 C03 SING N N 13 87Q C12 C22 SING N N 14 87Q C12 C13 SING N N 15 87Q C22 O23 SING N N 16 87Q C03 C02 SING N N 17 87Q C13 C14 SING N N 18 87Q C02 C01 SING N N 19 87Q C14 C15 DOUB N Z 20 87Q C15 C16 SING N N 21 87Q C16 C17 SING N N 22 87Q C17 C18 SING N N 23 87Q O21 C19 DOUB N N 24 87Q C18 C19 SING N N 25 87Q C19 O20 SING N N 26 87Q C10 H1 SING N N 27 87Q C13 H3 SING N N 28 87Q C13 H4 SING N N 29 87Q C15 H5 SING N N 30 87Q C17 H7 SING N N 31 87Q C17 H8 SING N N 32 87Q C22 H9 SING N N 33 87Q C24 H10 SING N N 34 87Q C24 H11 SING N N 35 87Q C01 H12 SING N N 36 87Q C01 H13 SING N N 37 87Q C01 H14 SING N N 38 87Q C02 H15 SING N N 39 87Q C02 H16 SING N N 40 87Q C03 H17 SING N N 41 87Q C03 H18 SING N N 42 87Q C04 H19 SING N N 43 87Q C04 H20 SING N N 44 87Q C05 H21 SING N N 45 87Q C05 H22 SING N N 46 87Q C07 H23 SING N N 47 87Q C07 H24 SING N N 48 87Q C07 H25 SING N N 49 87Q C09 H26 SING N N 50 87Q C11 H28 SING N N 51 87Q C12 H29 SING N N 52 87Q C14 H30 SING N N 53 87Q C16 H32 SING N N 54 87Q C16 H33 SING N N 55 87Q C18 H34 SING N N 56 87Q C18 H35 SING N N 57 87Q C25 H36 SING N N 58 87Q O08 H37 SING N N 59 87Q O20 H38 SING N N 60 87Q O23 H39 SING N N 61 87Q O26 H40 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 87Q InChI InChI 1.06 "InChI=1S/C21H36O5/c1-3-4-9-13-21(2,26)14-12-17-16(18(22)15-19(17)23)10-7-5-6-8-11-20(24)25/h5,7,12,14,16-19,22-23,26H,3-4,6,8-11,13,15H2,1-2H3,(H,24,25)/b7-5-,14-12+/t16-,17-,18+,19-,21+/m1/s1" 87Q InChIKey InChI 1.06 DLJKPYFALUEJCK-IIELGFQLSA-N 87Q SMILES_CANONICAL CACTVS 3.385 "CCCCC[C@](C)(O)\C=C\[C@H]1[C@H](O)C[C@H](O)[C@@H]1C\C=C/CCCC(O)=O" 87Q SMILES CACTVS 3.385 "CCCCC[C](C)(O)C=C[CH]1[CH](O)C[CH](O)[CH]1CC=CCCCC(O)=O" 87Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCC[C@@](C)(/C=C/[C@H]1[C@@H](C[C@@H]([C@@H]1C/C=C\CCCC(=O)O)O)O)O" 87Q SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCC(C)(C=CC1C(CC(C1CC=CCCCC(=O)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id 87Q _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(~{Z})-7-[(1~{R},2~{R},3~{R},5~{S})-2-[(~{E},3~{S})-3-methyl-3-oxidanyl-oct-1-enyl]-3,5-bis(oxidanyl)cyclopentyl]hept-5-enoic acid" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 87Q _pdbx_chem_comp_synonyms.name "7-[3,5-Dihydroxy-2-(3-hydroxy-3-methyloct-1-enyl)cyclopentyl]hept-5-enoic acid" _pdbx_chem_comp_synonyms.provenance PUBCHEM _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 87Q "Create component" 2023-03-22 PDBC 87Q "Other modification" 2023-06-09 PDBC 87Q "Initial release" 2024-01-31 RCSB #