data_88T # _chem_comp.id 88T _chem_comp.name "(1~{R},4~{R},11~{S},14~{S},19~{Z})-19-[2-[2,5-bis(oxidanylidene)pyrrolidin-1-yl]ethylimino]-7,8,17,18-tetraoxa-1,4,11,14-tetrazatricyclo[12.6.2.2^{4,11}]tetracosane-6,9,16-trione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H32 N6 O9" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-10-07 _chem_comp.pdbx_modified_date 2022-08-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 524.524 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 88T _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7PH3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 88T N2 N1 N 0 1 N N N 133.025 154.148 217.362 -4.324 0.498 -0.287 N2 88T 1 88T O2 O1 O 0 1 N N N 133.666 152.541 215.758 -4.966 -1.389 -1.369 O2 88T 2 88T N3 N2 N 0 1 N N N 135.781 153.401 219.803 -0.733 0.194 -1.245 N3 88T 3 88T O3 O2 O 0 1 N N N 131.610 155.750 218.370 -4.132 2.288 1.092 O3 88T 4 88T C4 C1 C 0 1 N N N 131.372 153.312 215.781 -6.282 -0.508 0.468 C4 88T 5 88T N4 N3 N 0 1 N N R 139.164 151.970 218.548 2.213 -1.257 -2.452 N4 88T 6 88T O4 O3 O 0 1 N N N 136.446 151.823 218.233 -0.494 -2.063 -1.259 O4 88T 7 88T C5 C2 C 0 1 N N N 132.824 153.236 216.242 -5.131 -0.546 -0.514 C5 88T 8 88T N5 N4 N 0 1 N N R 140.175 152.585 215.913 3.291 2.183 -1.073 N5 88T 9 88T O5 O4 O 0 1 N N N 137.775 154.495 216.989 0.454 3.226 -1.732 O5 88T 10 88T C6 C3 C 0 1 N N N 130.649 154.094 216.873 -6.001 0.756 1.306 C6 88T 11 88T N6 N5 N 0 1 N N S 139.019 150.359 214.677 3.229 0.429 2.223 N6 88T 12 88T O6 O5 O 0 1 N N N 137.397 153.692 214.997 0.172 2.459 0.302 O6 88T 13 88T C7 C4 C 0 1 N N N 131.757 154.819 217.657 -4.715 1.294 0.716 C7 88T 14 88T N7 N6 N 0 1 N N S 138.165 149.563 217.402 2.514 -3.016 0.935 N7 88T 15 88T O7 O6 O 0 1 N N N 135.229 149.751 215.638 -0.432 -2.884 1.996 O7 88T 16 88T C8 C5 C 0 1 N N N 134.307 154.359 218.084 -3.110 0.745 -1.068 C8 88T 17 88T O8 O7 O 0 1 N N N 135.736 151.187 217.205 -0.742 -2.216 -0.057 O8 88T 18 88T C9 C6 C 0 1 N N N 134.381 153.419 219.316 -1.926 0.034 -0.409 C9 88T 19 88T O9 O8 O 0 1 N N N 136.986 152.344 214.251 0.634 2.263 1.441 O9 88T 20 88T C10 C7 C 0 1 N N N 136.781 152.511 219.137 -0.136 -0.856 -1.737 C10 88T 21 88T O10 O9 O 0 1 N N N 138.030 152.782 212.389 0.120 0.155 1.244 O10 88T 22 88T C11 C8 C 0 1 N N N 138.263 152.484 219.639 0.863 -0.651 -2.827 C11 88T 23 88T C12 C9 C 0 1 N N N 140.292 152.933 218.369 3.048 -0.073 -1.997 C12 88T 24 88T C13 C10 C 0 1 N N N 141.089 152.567 217.070 2.264 1.095 -1.443 C13 88T 25 88T C14 C11 C 0 1 N N N 139.720 153.956 215.646 2.416 3.247 -0.442 C14 88T 26 88T C15 C12 C 0 1 N N N 138.208 154.051 215.891 0.964 2.957 -0.656 C15 88T 27 88T C16 C13 C 0 1 N N N 140.861 152.028 214.713 4.021 1.539 0.102 C16 88T 28 88T C17 C14 C 0 1 N N N 140.491 150.528 214.575 3.336 1.734 1.429 C17 88T 29 88T C18 C15 C 0 1 N N N 138.726 148.978 215.067 3.039 -0.607 1.125 C18 88T 30 88T C19 C16 C 0 1 N N N 139.083 148.766 216.553 2.064 -1.690 1.551 C19 88T 31 88T C20 C17 C 0 1 N N N 136.799 149.007 217.332 1.209 -3.689 0.531 C20 88T 32 88T C21 C18 C 0 1 N N N 135.865 150.044 216.684 -0.018 -2.899 0.830 C21 88T 33 88T C22 C19 C 0 1 N N N 139.728 150.655 218.967 1.830 -1.900 -1.124 C22 88T 34 88T C23 C20 C 0 1 N N N 138.648 149.554 218.806 3.014 -2.568 -0.453 C23 88T 35 88T C24 C21 C 0 1 N N N 138.415 150.606 213.363 1.829 0.578 2.814 C24 88T 36 88T C25 C22 C 0 1 N N N 137.769 151.992 213.333 0.827 0.972 1.789 C25 88T 37 88T H1 H1 H 0 1 N N N 131.300 153.838 214.817 -7.232 -0.411 -0.058 H1 88T 38 88T H2 H2 H 0 1 N N N 130.945 152.303 215.681 -6.280 -1.398 1.097 H2 88T 39 88T H5 H5 H 0 1 N N N 129.953 154.821 216.429 -6.811 1.477 1.197 H5 88T 40 88T H6 H6 H 0 1 N N N 130.094 153.411 217.533 -5.856 0.496 2.355 H6 88T 41 88T H9 H9 H 0 1 N N N 135.147 154.140 217.408 -3.245 0.364 -2.080 H9 88T 42 88T H10 H10 H 0 1 N N N 134.369 155.405 218.419 -2.914 1.817 -1.106 H10 88T 43 88T H11 H11 H 0 1 N N N 133.716 153.792 220.109 -2.154 -1.026 -0.300 H11 88T 44 88T H12 H12 H 0 1 N N N 134.074 152.403 219.028 -1.742 0.469 0.573 H12 88T 45 88T H13 H13 H 0 1 N N N 138.339 151.824 220.516 0.985 0.382 -3.108 H13 88T 46 88T H14 H14 H 0 1 N N N 138.572 153.502 219.918 0.518 -1.178 -3.733 H14 88T 47 88T H15 H15 H 0 1 N N N 140.963 152.878 219.239 3.738 -0.472 -1.247 H15 88T 48 88T H16 H16 H 0 1 N N N 139.892 153.954 218.279 3.652 0.246 -2.854 H16 88T 49 88T H17 H17 H 0 1 N N N 141.525 151.563 217.178 1.655 0.862 -0.600 H17 88T 50 88T H18 H18 H 0 1 N N N 141.893 153.301 216.914 1.678 1.560 -2.248 H18 88T 51 88T H19 H19 H 0 1 N N N 139.939 154.218 214.600 2.675 3.487 0.561 H19 88T 52 88T H20 H20 H 0 1 N N N 140.244 154.653 216.316 2.636 4.172 -1.020 H20 88T 53 88T H21 H21 H 0 1 N N N 141.950 152.131 214.829 4.264 0.513 -0.108 H21 88T 54 88T H22 H22 H 0 1 N N N 140.535 152.573 213.815 5.007 2.052 0.144 H22 88T 55 88T H23 H23 H 0 1 N N N 140.980 149.956 215.377 2.391 2.199 1.385 H23 88T 56 88T H24 H24 H 0 1 N N N 140.834 150.156 213.598 3.982 2.388 2.052 H24 88T 57 88T H25 H25 H 0 1 N N N 137.655 148.776 214.916 2.690 -0.127 0.237 H25 88T 58 88T H26 H26 H 0 1 N N N 139.320 148.290 214.447 4.031 -1.064 0.973 H26 88T 59 88T H27 H27 H 0 1 N N N 138.983 147.700 216.805 1.076 -1.426 1.214 H27 88T 60 88T H28 H28 H 0 1 N N N 140.119 149.089 216.730 2.068 -1.828 2.630 H28 88T 61 88T H29 H29 H 0 1 N N N 136.444 148.775 218.347 1.259 -4.005 -0.504 H29 88T 62 88T H30 H30 H 0 1 N N N 136.806 148.089 216.727 1.169 -4.636 1.113 H30 88T 63 88T H31 H31 H 0 1 N N N 140.597 150.411 218.338 1.405 -1.151 -0.484 H31 88T 64 88T H32 H32 H 0 1 N N N 140.042 150.709 220.020 1.160 -2.713 -1.434 H32 88T 65 88T H33 H33 H 0 1 N N N 137.809 149.756 219.488 3.876 -1.945 -0.380 H33 88T 66 88T H34 H34 H 0 1 N N N 139.083 148.572 219.042 3.262 -3.486 -1.005 H34 88T 67 88T H35 H35 H 0 1 N N N 137.648 149.843 213.166 1.553 -0.345 3.314 H35 88T 68 88T H36 H36 H 0 1 N N N 139.194 150.551 212.588 1.891 1.365 3.580 H36 88T 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 88T O10 C25 DOUB N N 1 88T C25 C24 SING N N 2 88T C25 O9 SING N N 3 88T C24 N6 SING N N 4 88T O9 O6 SING N N 5 88T C17 N6 SING N N 6 88T C17 C16 SING N N 7 88T N6 C18 SING N N 8 88T C16 N5 SING N N 9 88T O6 C15 SING N N 10 88T C18 C19 SING N N 11 88T O7 C21 DOUB N N 12 88T C14 C15 SING N N 13 88T C14 N5 SING N N 14 88T O2 C5 DOUB N N 15 88T C4 C5 SING N N 16 88T C4 C6 SING N N 17 88T C15 O5 DOUB N N 18 88T N5 C13 SING N N 19 88T C5 N2 SING N N 20 88T C19 N7 SING N N 21 88T C21 O8 SING N N 22 88T C21 C20 SING N N 23 88T C6 C7 SING N N 24 88T C13 C12 SING N N 25 88T O8 O4 SING N N 26 88T C20 N7 SING N N 27 88T N2 C7 SING N N 28 88T N2 C8 SING N N 29 88T N7 C23 SING N N 30 88T C7 O3 DOUB N N 31 88T C8 C9 SING N N 32 88T O4 C10 SING N N 33 88T C12 N4 SING N N 34 88T N4 C22 SING N N 35 88T N4 C11 SING N N 36 88T C23 C22 SING N N 37 88T C10 C11 SING N N 38 88T C10 N3 DOUB N N 39 88T C9 N3 SING N N 40 88T C4 H1 SING N N 41 88T C4 H2 SING N N 42 88T C6 H5 SING N N 43 88T C6 H6 SING N N 44 88T C8 H9 SING N N 45 88T C8 H10 SING N N 46 88T C9 H11 SING N N 47 88T C9 H12 SING N N 48 88T C11 H13 SING N N 49 88T C11 H14 SING N N 50 88T C12 H15 SING N N 51 88T C12 H16 SING N N 52 88T C13 H17 SING N N 53 88T C13 H18 SING N N 54 88T C14 H19 SING N N 55 88T C14 H20 SING N N 56 88T C16 H21 SING N N 57 88T C16 H22 SING N N 58 88T C17 H23 SING N N 59 88T C17 H24 SING N N 60 88T C18 H25 SING N N 61 88T C18 H26 SING N N 62 88T C19 H27 SING N N 63 88T C19 H28 SING N N 64 88T C20 H29 SING N N 65 88T C20 H30 SING N N 66 88T C22 H31 SING N N 67 88T C22 H32 SING N N 68 88T C23 H33 SING N N 69 88T C23 H34 SING N N 70 88T C24 H35 SING N N 71 88T C24 H36 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 88T InChI InChI 1.06 "InChI=1S/C22H32N6O9/c29-18-1-2-19(30)28(18)4-3-23-17-13-24-5-7-25(14-20(31)35-34-17)9-11-27-12-10-26(8-6-24)15-21(32)36-37-22(33)16-27/h1-16H2/b23-17-" 88T InChIKey InChI 1.06 KCVYYVOXIBCERI-QJOMJCCJSA-N 88T SMILES_CANONICAL CACTVS 3.385 "O=C1C[N@@]2CC[N@@](CC[N@]3CC[N@@](CC2)CC(=O)OOC(C3)=NCCN4C(=O)CCC4=O)CC(=O)OO1" 88T SMILES CACTVS 3.385 "O=C1C[N]2CC[N](CC[N]3CC[N](CC2)CC(=O)OOC(C3)=NCCN4C(=O)CCC4=O)CC(=O)OO1" 88T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CC(=O)N(C1=O)CC/N=C\2/C[N@@]3CC[N@@](CC[N@]4CC[N@@](CC3)CC(=O)OOC(=O)C4)CC(=O)OO2" 88T SMILES "OpenEye OEToolkits" 2.0.7 "C1CC(=O)N(C1=O)CCN=C2CN3CCN(CCN4CCN(CC3)CC(=O)OOC(=O)C4)CC(=O)OO2" # _pdbx_chem_comp_identifier.comp_id 88T _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{R},4~{R},11~{S},14~{S},19~{Z})-19-[2-[2,5-bis(oxidanylidene)pyrrolidin-1-yl]ethylimino]-7,8,17,18-tetraoxa-1,4,11,14-tetrazatricyclo[12.6.2.2^{4,11}]tetracosane-6,9,16-trione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 88T "Create component" 2021-10-07 PDBE 88T "Initial release" 2022-08-24 RCSB 88T "Modify descriptor" 2022-08-22 RCSB #