data_8AA # _chem_comp.id 8AA _chem_comp.name "8-[acetyl(anthracen-2-yl)amino]-2'-deoxy-5'-O-(dihydroxyphosphanyl)guanosine" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C26 H25 N6 O7 P" _chem_comp.mon_nstd_parent_comp_id G _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-05-13 _chem_comp.pdbx_modified_date 2016-05-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 564.486 _chem_comp.one_letter_code G _chem_comp.three_letter_code 8AA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5g34 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8AA P P P 0 1 N N N 18.897 55.961 -42.574 6.403 -2.901 0.437 P 8AA 1 8AA N1 N1 N 0 1 N N N 24.556 54.623 -40.899 3.271 4.278 -0.952 N1 8AA 2 8AA C2 C2 C 0 1 N N N 24.505 55.751 -41.604 3.707 3.088 -1.306 C2 8AA 3 8AA N2 N2 N 0 1 N N N 25.266 55.816 -42.697 4.872 2.999 -2.020 N2 8AA 4 8AA C3 C3 C 0 1 Y N N 21.696 57.402 -30.671 -7.610 -2.044 0.882 C3 8AA 5 8AA N3 N3 N 0 1 N N N 23.771 56.826 -41.306 3.045 1.945 -0.990 N3 8AA 6 8AA C4 C4 C 0 1 Y N N 23.014 56.815 -40.215 1.875 1.991 -0.276 C4 8AA 7 8AA N4 N4 N 0 1 N N N 20.769 57.798 -37.772 -1.093 1.117 1.461 N4 8AA 8 8AA C5 C5 C 0 1 Y N N 22.991 55.607 -39.359 1.378 3.227 0.118 C5 8AA 9 8AA C6 C6 C 0 1 N N N 23.857 54.468 -39.793 2.136 4.425 -0.251 C6 8AA 10 8AA O6 O6 O 0 1 N N N 23.945 53.383 -39.179 1.742 5.536 0.071 O6 8AA 11 8AA C7 C7 C 0 1 Y N N 21.956 58.083 -29.489 -8.692 -2.319 0.109 C7 8AA 12 8AA N7 N7 N 0 1 Y N N 22.124 55.866 -38.334 0.228 3.005 0.800 N7 8AA 13 8AA C8 C8 C 0 1 Y N N 21.683 57.128 -38.579 -0.002 1.717 0.844 C8 8AA 14 8AA C9 C9 C 0 1 N N N 19.442 57.978 -38.068 -1.053 0.839 2.779 C9 8AA 15 8AA N9 N9 N 0 1 Y N N 22.194 57.703 -39.675 0.998 1.055 0.186 N9 8AA 16 8AA "C1'" "C1'" C 0 1 N N R 21.894 59.053 -40.199 1.106 -0.396 0.011 "C1'" 8AA 17 8AA C10 C10 C 0 1 N N N 18.458 57.398 -37.073 0.134 1.265 3.603 C10 8AA 18 8AA C11 C11 C 0 1 Y N N 22.166 59.472 -29.466 -8.779 -1.883 -1.213 C11 8AA 19 8AA O11 O11 O 0 1 N N N 19.027 58.618 -39.033 -1.973 0.246 3.302 O11 8AA 20 8AA C12 C12 C 0 1 Y N N 21.091 58.380 -36.535 -2.234 0.801 0.713 C12 8AA 21 8AA C13 C13 C 0 1 Y N N 21.279 59.764 -36.505 -2.326 1.242 -0.614 C13 8AA 22 8AA C14 C14 C 0 1 Y N N 21.533 60.401 -35.304 -3.408 0.964 -1.383 C14 8AA 23 8AA C15 C15 C 0 1 Y N N 21.575 59.651 -34.143 -4.475 0.213 -0.843 C15 8AA 24 8AA C16 C16 C 0 1 Y N N 21.364 58.261 -34.165 -4.381 -0.250 0.546 C16 8AA 25 8AA C17 C17 C 0 1 Y N N 21.108 57.625 -35.361 -3.229 0.072 1.293 C17 8AA 26 8AA C18 C18 C 0 1 Y N N 21.833 60.330 -32.975 -5.597 -0.092 -1.609 C18 8AA 27 8AA C19 C19 C 0 1 Y N N 21.879 59.602 -31.814 -6.636 -0.831 -1.045 C19 8AA 28 8AA "C2'" "C2'" C 0 1 N N N 22.930 59.410 -41.254 0.748 -0.777 -1.438 "C2'" 8AA 29 8AA C20 C20 C 0 1 Y N N 21.652 58.128 -31.838 -6.543 -1.294 0.344 C20 8AA 30 8AA C21 C21 C 0 1 Y N N 21.397 57.495 -33.021 -5.418 -0.993 1.109 C21 8AA 31 8AA C22 C22 C 0 1 Y N N 22.132 60.246 -30.622 -7.785 -1.163 -1.793 C22 8AA 32 8AA "C3'" "C3'" C 0 1 N N S 22.130 59.602 -42.532 2.016 -1.492 -1.966 "C3'" 8AA 33 8AA "O3'" "O3'" O 0 1 N N N 22.243 60.924 -43.075 1.666 -2.633 -2.753 "O3'" 8AA 34 8AA "C4'" "C4'" C 0 1 N N R 20.664 59.376 -42.177 2.718 -1.920 -0.653 "C4'" 8AA 35 8AA "O4'" "O4'" O 0 1 N N N 20.580 59.073 -40.784 2.461 -0.816 0.245 "O4'" 8AA 36 8AA "C5'" "C5'" C 0 1 N N N 20.071 58.269 -43.037 4.222 -2.092 -0.878 "C5'" 8AA 37 8AA "O5'" "O5'" O 0 1 N N N 20.038 57.069 -42.291 4.827 -2.598 0.314 "O5'" 8AA 38 8AA OP1 OP1 O 0 1 N N N 17.636 56.563 -43.133 6.595 -3.037 2.030 OP1 8AA 39 8AA OP2 OP2 O 0 1 N N N 19.534 54.856 -43.416 6.488 -4.435 -0.044 OP2 8AA 40 8AA HN2 HN2 H 0 1 N N N 25.840 55.038 -42.953 5.359 3.804 -2.255 HN2 8AA 41 8AA HN2A HN2A H 0 0 N N N 25.263 56.642 -43.260 5.210 2.131 -2.291 HN2A 8AA 42 8AA H3 H3 H 0 1 N N N 21.533 56.334 -30.674 -7.569 -2.393 1.904 H3 8AA 43 8AA HN3 HN3 H 0 1 N N N 23.791 57.631 -41.899 3.402 1.088 -1.272 HN3 8AA 44 8AA H7 H7 H 0 1 N N N 21.998 57.530 -28.562 -9.507 -2.890 0.529 H7 8AA 45 8AA "H1'" "H1'" H 0 1 N N N 21.953 59.785 -39.380 0.436 -0.904 0.705 "H1'" 8AA 46 8AA H10 H10 H 0 1 N N N 17.433 57.652 -37.380 0.892 1.700 2.951 H10 8AA 47 8AA H10A H10A H 0 0 N N N 18.571 56.304 -37.041 -0.181 2.006 4.338 H10A 8AA 48 8AA H10B H10B H 0 0 N N N 18.656 57.816 -36.075 0.551 0.398 4.116 H10B 8AA 49 8AA H11 H11 H 0 1 N N N 22.360 59.955 -28.520 -9.659 -2.126 -1.790 H11 8AA 50 8AA H13 H13 H 0 1 N N N 21.226 60.336 -37.419 -1.515 1.817 -1.035 H13 8AA 51 8AA H14 H14 H 0 1 N N N 21.696 61.468 -35.273 -3.453 1.316 -2.403 H14 8AA 52 8AA H17 H17 H 0 1 N N N 20.924 56.561 -35.389 -3.136 -0.257 2.318 H17 8AA 53 8AA H18 H18 H 0 1 N N N 21.994 61.398 -32.972 -5.664 0.245 -2.633 H18 8AA 54 8AA "H2'" "H2'" H 0 1 N N N 23.456 60.337 -40.983 -0.106 -1.453 -1.455 "H2'" 8AA 55 8AA "H2'A" "H2'A" H 0 0 N N N 23.660 58.595 -41.372 0.539 0.116 -2.027 "H2'A" 8AA 56 8AA H21 H21 H 0 1 N N N 21.227 56.429 -33.058 -5.349 -1.334 2.132 H21 8AA 57 8AA H22 H22 H 0 1 N N N 22.298 61.313 -30.586 -7.879 -0.835 -2.818 H22 8AA 58 8AA "H3'" "H3'" H 0 1 N N N 22.443 58.852 -43.273 2.641 -0.805 -2.536 "H3'" 8AA 59 8AA "HO3'" "HO3'" H 0 0 N N N 21.725 60.986 -43.869 1.146 -2.424 -3.540 "HO3'" 8AA 60 8AA "H4'" "H4'" H 0 1 N N N 20.113 60.305 -42.384 2.279 -2.838 -0.264 "H4'" 8AA 61 8AA "H5'" "H5'" H 0 1 N N N 19.049 58.544 -43.337 4.389 -2.794 -1.695 "H5'" 8AA 62 8AA "H5'A" "H5'A" H 0 0 N N N 20.691 58.128 -43.934 4.665 -1.129 -1.130 "H5'A" 8AA 63 8AA HOP1 HOP1 H 0 0 N N N 17.317 57.236 -42.543 7.504 -3.225 2.302 HOP1 8AA 64 8AA HOP2 HOP2 H 0 0 N N N 20.319 54.541 -42.984 7.383 -4.801 -0.036 HOP2 8AA 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8AA OP2 P SING N N 1 8AA OP1 P SING N N 2 8AA P "O5'" SING N N 3 8AA C2 N1 DOUB N N 4 8AA N1 C6 SING N N 5 8AA N2 C2 SING N N 6 8AA C2 N3 SING N N 7 8AA N2 HN2 SING N N 8 8AA N2 HN2A SING N N 9 8AA C20 C3 DOUB Y N 10 8AA C3 C7 SING Y N 11 8AA C3 H3 SING N N 12 8AA N3 C4 SING N N 13 8AA N3 HN3 SING N N 14 8AA C4 N9 SING Y N 15 8AA C4 C5 DOUB Y N 16 8AA C8 N4 SING N N 17 8AA C9 N4 SING N N 18 8AA N4 C12 SING N N 19 8AA C6 C5 SING N N 20 8AA C5 N7 SING Y N 21 8AA C6 O6 DOUB N N 22 8AA C7 C11 DOUB Y N 23 8AA C7 H7 SING N N 24 8AA C8 N7 DOUB Y N 25 8AA N9 C8 SING Y N 26 8AA O11 C9 DOUB N N 27 8AA C9 C10 SING N N 28 8AA "C1'" N9 SING N N 29 8AA "C2'" "C1'" SING N N 30 8AA "O4'" "C1'" SING N N 31 8AA "C1'" "H1'" SING N N 32 8AA C10 H10 SING N N 33 8AA C10 H10A SING N N 34 8AA C10 H10B SING N N 35 8AA C22 C11 SING Y N 36 8AA C11 H11 SING N N 37 8AA C12 C13 SING Y N 38 8AA C12 C17 DOUB Y N 39 8AA C13 C14 DOUB Y N 40 8AA C13 H13 SING N N 41 8AA C14 C15 SING Y N 42 8AA C14 H14 SING N N 43 8AA C16 C15 SING Y N 44 8AA C15 C18 DOUB Y N 45 8AA C17 C16 SING Y N 46 8AA C16 C21 DOUB Y N 47 8AA C17 H17 SING N N 48 8AA C18 C19 SING Y N 49 8AA C18 H18 SING N N 50 8AA C20 C19 SING Y N 51 8AA C19 C22 DOUB Y N 52 8AA "C3'" "C2'" SING N N 53 8AA "C2'" "H2'" SING N N 54 8AA "C2'" "H2'A" SING N N 55 8AA C21 C20 SING Y N 56 8AA C21 H21 SING N N 57 8AA C22 H22 SING N N 58 8AA "O3'" "C3'" SING N N 59 8AA "C3'" "C4'" SING N N 60 8AA "C3'" "H3'" SING N N 61 8AA "O3'" "HO3'" SING N N 62 8AA "C5'" "C4'" SING N N 63 8AA "C4'" "O4'" SING N N 64 8AA "C4'" "H4'" SING N N 65 8AA "C5'" "O5'" SING N N 66 8AA "C5'" "H5'" SING N N 67 8AA "C5'" "H5'A" SING N N 68 8AA OP1 HOP1 SING N N 69 8AA OP2 HOP2 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8AA SMILES ACDLabs 12.01 "P(OCC6C(CC(n5c1NC(=NC(c1nc5N(c4ccc3cc2ccccc2cc3c4)C(C)=O)=O)N)O6)O)(O)O" 8AA InChI InChI 1.03 "InChI=1S/C26H25N6O7P/c1-13(33)31(18-7-6-16-8-14-4-2-3-5-15(14)9-17(16)10-18)26-28-22-23(29-25(27)30-24(22)35)32(26)21-11-19(34)20(39-21)12-38-40(36)37/h2-10,19-21,34,36-37H,11-12H2,1H3,(H3,27,29,30,35)/t19-,20+,21+/m0/s1" 8AA InChIKey InChI 1.03 RRBSUYWZIMIROG-PWRODBHTSA-N 8AA SMILES_CANONICAL CACTVS 3.385 "CC(=O)N(c1ccc2cc3ccccc3cc2c1)c4nc5C(=O)N=C(N)Nc5n4[C@H]6C[C@H](O)[C@@H](COP(O)O)O6" 8AA SMILES CACTVS 3.385 "CC(=O)N(c1ccc2cc3ccccc3cc2c1)c4nc5C(=O)N=C(N)Nc5n4[CH]6C[CH](O)[CH](COP(O)O)O6" 8AA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(=O)N(c1ccc2cc3ccccc3cc2c1)c4nc5c(n4[C@H]6C[C@@H]([C@H](O6)COP(O)O)O)NC(=NC5=O)N" 8AA SMILES "OpenEye OEToolkits" 1.7.6 "CC(=O)N(c1ccc2cc3ccccc3cc2c1)c4nc5c(n4C6CC(C(O6)COP(O)O)O)NC(=NC5=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 8AA "SYSTEMATIC NAME" ACDLabs 12.01 "8-[acetyl(anthracen-2-yl)amino]-2'-deoxy-5'-O-(dihydroxyphosphanyl)guanosine" 8AA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,5R)-5-[8-[anthracen-2-yl(ethanoyl)amino]-2-azanyl-6-oxidanylidene-3H-purin-9-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphite" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8AA "Create component" 2016-05-13 EBI 8AA "Initial release" 2016-06-01 RCSB #