data_8AG # _chem_comp.id 8AG _chem_comp.name "8-[ACETYL(ANTHRACEN-2-YL)AMINO]-2'-DEOXYGUANOSINE 5'-(DIHYDROGEN PHOSPHATE)" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C26 H27 N6 O8 P" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-06-07 _chem_comp.pdbx_modified_date 2019-05-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 582.502 _chem_comp.one_letter_code G _chem_comp.three_letter_code 8AG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2XGQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8AG P P P 0 1 N N N 37.407 -31.371 -1.759 -5.689 2.908 1.173 P 8AG 1 8AG O2P O2P O 0 1 N N N 36.809 -30.137 -2.378 -6.808 3.404 0.341 O2P 8AG 2 8AG O1P O1P O 0 1 N N N 38.383 -32.179 -2.572 -5.202 4.074 2.170 O1P 8AG 3 8AG O3P O3P O 0 1 N Y N ? ? ? -6.181 1.638 2.032 O3P 8AG 4 8AG "O5'" "O5'" O 0 1 N N N 36.199 -32.329 -1.311 -4.466 2.470 0.221 "O5'" 8AG 5 8AG "C5'" "C5'" C 0 1 N N N 35.896 -33.480 -2.082 -4.607 1.528 -0.844 "C5'" 8AG 6 8AG "C4'" "C4'" C 0 1 N N R 34.781 -34.338 -1.487 -3.258 1.342 -1.542 "C4'" 8AG 7 8AG "O4'" "O4'" O 0 1 N N N 34.762 -34.398 -0.067 -2.309 0.712 -0.655 "O4'" 8AG 8 8AG "C3'" "C3'" C 0 1 N N S 33.379 -33.970 -1.915 -3.384 0.333 -2.712 "C3'" 8AG 9 8AG "O3'" "O3'" O 0 1 N N N 32.760 -35.231 -2.124 -3.802 0.990 -3.910 "O3'" 8AG 10 8AG "C2'" "C2'" C 0 1 N N N 32.765 -33.390 -0.665 -1.933 -0.190 -2.846 "C2'" 8AG 11 8AG "C1'" "C1'" C 0 1 N N R 33.426 -34.240 0.398 -1.291 0.122 -1.480 "C1'" 8AG 12 8AG N9 N9 N 0 1 N N N 33.528 -33.515 1.671 -0.806 -1.116 -0.864 N9 8AG 13 8AG C4 C4 C 0 1 N N N 33.825 -32.225 1.816 -1.587 -2.185 -0.456 C4 8AG 14 8AG N3 N3 N 0 1 N N N 34.045 -31.237 0.922 -2.916 -2.366 -0.510 N3 8AG 15 8AG C2 C2 C 0 1 N N N 34.318 -29.990 1.323 -3.474 -3.469 -0.064 C2 8AG 16 8AG N2 N2 N 0 1 N N N 34.559 -28.941 0.315 -4.837 -3.609 -0.140 N2 8AG 17 8AG N1 N1 N 0 1 N N N 34.382 -29.657 2.620 -2.732 -4.475 0.472 N1 8AG 18 8AG C6 C6 C 0 1 N N N 34.177 -30.569 3.573 -1.390 -4.354 0.555 C6 8AG 19 8AG O6 O6 O 0 1 N N N 34.245 -30.223 4.874 -0.714 -5.252 1.034 O6 8AG 20 8AG C5 C5 C 0 1 N N N 33.876 -31.951 3.171 -0.787 -3.180 0.081 C5 8AG 21 8AG N7 N7 N 0 1 N N N 33.630 -33.082 3.860 0.567 -2.782 0.038 N7 8AG 22 8AG C8 C8 C 0 1 N N S 33.413 -33.988 2.905 0.594 -1.447 -0.575 C8 8AG 23 8AG N29 N29 N 0 1 N N N 33.154 -35.378 3.320 1.161 -0.474 0.362 N29 8AG 24 8AG C30 C30 C 0 1 N N N 34.186 -36.292 3.381 0.348 0.349 1.054 C30 8AG 25 8AG C45 C45 C 0 1 N N N 33.827 -37.740 3.500 0.927 1.312 2.057 C45 8AG 26 8AG O44 O44 O 0 1 N N N 35.345 -35.924 3.340 -0.850 0.313 0.869 O44 8AG 27 8AG C32 C32 C 0 1 Y N N 31.787 -35.771 3.509 2.546 -0.398 0.539 C32 8AG 28 8AG C31 C31 C 0 1 Y N N 31.210 -36.837 2.837 3.159 -1.212 1.500 C31 8AG 29 8AG C36 C36 C 0 1 Y N N 29.910 -37.244 3.111 4.498 -1.180 1.712 C36 8AG 30 8AG C35 C35 C 0 1 Y N N 29.183 -36.611 4.102 5.305 -0.306 0.950 C35 8AG 31 8AG C34 C34 C 0 1 Y N N 29.819 -35.512 4.847 4.667 0.547 -0.058 C34 8AG 32 8AG C33 C33 C 0 1 Y N N 31.107 -35.147 4.540 3.270 0.462 -0.234 C33 8AG 33 8AG C1 C1 C 0 1 Y N N 27.880 -36.967 4.424 6.683 -0.250 1.145 C1 8AG 34 8AG C39 C39 C 0 1 Y N N 27.216 -36.284 5.435 7.452 0.623 0.377 C39 8AG 35 8AG C38 C38 C 0 1 Y N N 27.822 -35.252 6.125 6.814 1.477 -0.631 C38 8AG 36 8AG C37 C37 C 0 1 Y N N 29.116 -34.864 5.838 5.436 1.420 -0.826 C37 8AG 37 8AG C43 C43 C 0 1 Y N N 25.925 -36.637 5.764 8.851 0.706 0.549 C43 8AG 38 8AG C42 C42 C 0 1 Y N N 25.242 -35.976 6.771 9.569 1.567 -0.216 C42 8AG 39 8AG C40 C40 C 0 1 Y N N 27.142 -34.596 7.133 7.623 2.349 -1.391 C40 8AG 40 8AG C41 C41 C 0 1 Y N N 25.849 -34.947 7.463 8.962 2.380 -1.175 C41 8AG 41 8AG H1P H1P H 0 1 N N N 38.015 -32.349 -3.431 -5.889 4.387 2.774 H1P 8AG 42 8AG "H5'1" "H5'1" H 0 0 N N N 35.576 -33.148 -3.081 -4.942 0.572 -0.441 "H5'1" 8AG 43 8AG "H5'2" "H5'2" H 0 0 N N N 36.804 -34.101 -2.110 -5.339 1.897 -1.561 "H5'2" 8AG 44 8AG "H4'" "H4'" H 0 1 N N N 35.052 -35.318 -1.906 -2.876 2.299 -1.897 "H4'" 8AG 45 8AG "H3'" "H3'" H 0 1 N N N 33.303 -33.298 -2.783 -4.067 -0.477 -2.456 "H3'" 8AG 46 8AG "H1'" "H1'" H 0 1 N N N 32.863 -35.171 0.558 -0.466 0.822 -1.610 "H1'" 8AG 47 8AG "H2'1" "H2'1" H 0 0 N N N 32.988 -32.319 -0.545 -1.930 -1.264 -3.033 "H2'1" 8AG 48 8AG "H2'2" "H2'2" H 0 0 N N N 31.666 -33.418 -0.647 -1.409 0.338 -3.643 "H2'2" 8AG 49 8AG H21N H21N H 0 0 N N N 34.746 -28.081 0.789 -5.377 -2.898 -0.521 H21N 8AG 50 8AG H22N H22N H 0 0 N N N 34.539 -29.069 -0.677 -5.261 -4.418 0.186 H22N 8AG 51 8AG H1 H1 H 0 1 N N N 34.586 -28.712 2.877 -3.167 -5.280 0.795 H1 8AG 52 8AG H7 H7 H 0 1 N N N 34.406 -33.336 4.437 1.331 -3.292 0.350 H7 8AG 53 8AG H451 H451 H 0 0 N N N 33.739 -38.180 2.496 1.244 2.222 1.547 H451 8AG 54 8AG H452 H452 H 0 0 N N N 34.611 -38.267 4.064 0.171 1.559 2.803 H452 8AG 55 8AG H453 H453 H 0 0 N N N 32.867 -37.837 4.028 1.786 0.854 2.548 H453 8AG 56 8AG H31 H31 H 0 1 N N N 31.782 -37.361 2.086 2.549 -1.883 2.088 H31 8AG 57 8AG H33 H33 H 0 1 N N N 31.593 -34.367 5.108 2.776 1.077 -0.971 H33 8AG 58 8AG H36 H36 H 0 1 N N N 29.468 -38.054 2.550 4.945 -1.818 2.461 H36 8AG 59 8AG HA HA H 0 1 N N N 27.387 -37.768 3.893 7.153 -0.878 1.887 HA 8AG 60 8AG H37 H37 H 0 1 N N N 29.575 -34.056 6.388 4.966 2.049 -1.568 H37 8AG 61 8AG H43 H43 H 0 1 N N N 25.440 -37.440 5.229 9.346 0.089 1.284 H43 8AG 62 8AG H40 H40 H 0 1 N N N 27.630 -33.796 7.671 7.178 2.988 -2.139 H40 8AG 63 8AG H42 H42 H 0 1 N N N 24.231 -36.266 7.016 10.639 1.626 -0.079 H42 8AG 64 8AG H3A H3A H 0 1 N N N 32.622 -35.366 -3.054 -3.895 0.401 -4.670 H3A 8AG 65 8AG H41 H41 H 0 1 N N N 25.321 -34.426 8.248 9.575 3.050 -1.760 H41 8AG 66 8AG H88 H88 H 0 1 N N N 32.817 -34.736 2.361 1.175 -1.466 -1.497 H88 8AG 67 8AG H3P H3P H 0 1 N N N ? ? ? -5.497 1.260 2.602 H3P 8AG 68 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8AG P O2P DOUB N N 1 8AG P O1P SING N N 2 8AG P "O5'" SING N N 3 8AG P O3P SING N N 4 8AG "O5'" "C5'" SING N N 5 8AG "C5'" "C4'" SING N N 6 8AG "C4'" "O4'" SING N N 7 8AG "C4'" "C3'" SING N N 8 8AG "O4'" "C1'" SING N N 9 8AG "C3'" "O3'" SING N N 10 8AG "C3'" "C2'" SING N N 11 8AG "O3'" H3A SING N N 12 8AG "C2'" "C1'" SING N N 13 8AG "C1'" N9 SING N N 14 8AG N9 C4 SING N N 15 8AG N9 C8 SING N N 16 8AG C4 N3 SING N N 17 8AG C4 C5 DOUB N N 18 8AG N3 C2 DOUB N N 19 8AG C2 N2 SING N N 20 8AG C2 N1 SING N N 21 8AG N1 C6 SING N N 22 8AG C6 O6 DOUB N N 23 8AG C6 C5 SING N N 24 8AG C5 N7 SING N N 25 8AG N7 C8 SING N N 26 8AG C8 N29 SING N N 27 8AG N29 C30 SING N N 28 8AG N29 C32 SING N N 29 8AG C30 C45 SING N N 30 8AG C30 O44 DOUB N N 31 8AG C32 C31 SING Y N 32 8AG C32 C33 DOUB Y N 33 8AG C31 C36 DOUB Y N 34 8AG C36 C35 SING Y N 35 8AG C35 C34 SING Y N 36 8AG C35 C1 DOUB Y N 37 8AG C34 C33 SING Y N 38 8AG C34 C37 DOUB Y N 39 8AG C1 C39 SING Y N 40 8AG C39 C38 DOUB Y N 41 8AG C39 C43 SING Y N 42 8AG C38 C37 SING Y N 43 8AG C38 C40 SING Y N 44 8AG C40 C41 DOUB Y N 45 8AG C43 C42 DOUB Y N 46 8AG C42 C41 SING Y N 47 8AG O1P H1P SING N N 48 8AG "C5'" "H5'1" SING N N 49 8AG "C5'" "H5'2" SING N N 50 8AG "C4'" "H4'" SING N N 51 8AG "C3'" "H3'" SING N N 52 8AG "C1'" "H1'" SING N N 53 8AG "C2'" "H2'1" SING N N 54 8AG "C2'" "H2'2" SING N N 55 8AG N2 H21N SING N N 56 8AG N2 H22N SING N N 57 8AG N1 H1 SING N N 58 8AG N7 H7 SING N N 59 8AG C45 H451 SING N N 60 8AG C45 H452 SING N N 61 8AG C45 H453 SING N N 62 8AG C31 H31 SING N N 63 8AG C33 H33 SING N N 64 8AG C36 H36 SING N N 65 8AG C1 HA SING N N 66 8AG C37 H37 SING N N 67 8AG C43 H43 SING N N 68 8AG C40 H40 SING N N 69 8AG C42 H42 SING N N 70 8AG C41 H41 SING N N 71 8AG C8 H88 SING N N 72 8AG O3P H3P SING N N 73 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8AG SMILES ACDLabs 10.04 "O=C(N(c3cc2cc1ccccc1cc2cc3)C5N(C=4N=C(N)NC(=O)C=4N5)C6OC(C(O)C6)COP(=O)(O)O)C" 8AG SMILES_CANONICAL CACTVS 3.352 "CC(=O)N([C@H]1NC2=C(N=C(N)NC2=O)N1[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3)c4ccc5cc6ccccc6cc5c4" 8AG SMILES CACTVS 3.352 "CC(=O)N([CH]1NC2=C(N=C(N)NC2=O)N1[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3)c4ccc5cc6ccccc6cc5c4" 8AG SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "CC(=O)N(c1ccc2cc3ccccc3cc2c1)C4NC5=C(N4[C@H]6C[C@@H]([C@H](O6)COP(=O)(O)O)O)N=C(NC5=O)N" 8AG SMILES "OpenEye OEToolkits" 1.6.1 "CC(=O)N(c1ccc2cc3ccccc3cc2c1)C4NC5=C(N4C6CC(C(O6)COP(=O)(O)O)O)N=C(NC5=O)N" 8AG InChI InChI 1.03 "InChI=1S/C26H27N6O8P/c1-13(33)31(18-7-6-16-8-14-4-2-3-5-15(14)9-17(16)10-18)26-28-22-23(29-25(27)30-24(22)35)32(26)21-11-19(34)20(40-21)12-39-41(36,37)38/h2-10,19-21,26,28,34H,11-12H2,1H3,(H2,36,37,38)(H3,27,29,30,35)/t19-,20+,21+,26+/m0/s1" 8AG InChIKey InChI 1.03 OCECNASCCDEYBO-GQNXPXPTSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 8AG "SYSTEMATIC NAME" ACDLabs 10.04 "8-[acetyl(anthracen-2-yl)amino]-2'-deoxyguanosine 5'-(dihydrogen phosphate)" 8AG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[(2R,3S,5R)-5-[2-amino-8-(anthracen-2-yl-ethanoyl-amino)-6-oxo-7,8-dihydro-1H-purin-9-yl]-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8AG "Create component" 2010-06-07 EBI 8AG "Modify aromatic_flag" 2011-06-04 RCSB 8AG "Modify descriptor" 2011-06-04 RCSB 8AG "Modify one letter code" 2019-05-03 EBI ##