data_8BA # _chem_comp.id 8BA _chem_comp.name "8-bromo-deoxyadenosine-5'-monophosphate" _chem_comp.type "DNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H12 Br N5 O6 P" _chem_comp.mon_nstd_parent_comp_id DA _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-07-16 _chem_comp.pdbx_modified_date 2018-09-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 409.110 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8BA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4I29 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8BA P P1 P 0 1 N N N 12.303 -20.530 -25.421 -4.701 -0.638 0.952 P 8BA 1 8BA "O5'" O1 O 0 1 N N N 11.552 -19.191 -25.624 -3.380 0.281 0.903 "O5'" 8BA 2 8BA "C5'" C1 C 0 1 N N N 11.392 -18.738 -26.954 -2.790 0.730 -0.319 "C5'" 8BA 3 8BA "C4'" C2 C 0 1 N N R 10.433 -17.591 -27.122 -1.555 1.577 -0.007 "C4'" 8BA 4 8BA "O4'" O2 O 0 1 N N N 9.101 -18.022 -27.011 -0.520 0.767 0.592 "O4'" 8BA 5 8BA "C3'" C3 C 0 1 N N S 10.577 -16.485 -26.122 -0.900 2.090 -1.315 "C3'" 8BA 6 8BA "O3'" O3 O 0 1 N N N 11.516 -15.522 -26.537 -1.507 3.310 -1.745 "O3'" 8BA 7 8BA "C2'" C4 C 0 1 N N N 9.219 -15.874 -26.094 0.565 2.327 -0.874 "C2'" 8BA 8 8BA "C1'" C5 C 0 1 N N R 8.302 -16.922 -26.685 0.724 1.458 0.388 "C1'" 8BA 9 8BA N9 N1 N 0 1 Y N N 7.287 -17.302 -25.709 1.805 0.489 0.193 N9 8BA 10 8BA C8 C6 C 0 1 Y N N 6.038 -17.582 -25.936 1.755 -0.630 -0.585 C8 8BA 11 8BA N7 N2 N 0 1 Y N N 5.279 -17.887 -24.932 2.893 -1.262 -0.529 N7 8BA 12 8BA C5 C7 C 0 1 Y N N 6.103 -17.815 -23.935 3.742 -0.590 0.286 C5 8BA 13 8BA C6 C8 C 0 1 Y N N 5.943 -18.039 -22.522 5.065 -0.789 0.714 C6 8BA 14 8BA N1 N3 N 0 1 Y N N 6.997 -17.900 -21.763 5.603 0.100 1.542 N1 8BA 15 8BA C2 C9 C 0 1 Y N N 8.179 -17.556 -22.272 4.917 1.149 1.960 C2 8BA 16 8BA N3 N4 N 0 1 Y N N 8.403 -17.321 -23.558 3.676 1.375 1.586 N3 8BA 17 8BA C4 C10 C 0 1 Y N N 7.411 -17.433 -24.420 3.057 0.544 0.754 C4 8BA 18 8BA OP1 O4 O 0 1 N N N 12.595 -20.683 -24.043 -5.889 0.189 0.643 OP1 8BA 19 8BA OP2 O5 O 0 1 N N N 13.331 -20.512 -26.423 -4.583 -1.726 -0.045 OP2 8BA 20 8BA N6 N5 N 0 1 N N N 4.845 -18.359 -22.099 5.792 -1.885 0.282 N6 8BA 21 8BA BR BR1 BR 0 0 N N N 5.235 -17.514 -27.726 0.255 -1.183 -1.596 BR 8BA 22 8BA O1 O6 O 0 1 N Y N 11.259 -21.603 -25.844 -4.858 -1.273 2.423 O1 8BA 23 8BA H1 H1 H 0 1 N N N 11.027 -19.580 -27.560 -2.497 -0.131 -0.919 H1 8BA 24 8BA H2 H2 H 0 1 N N N 12.376 -18.418 -27.327 -3.512 1.330 -0.872 H2 8BA 25 8BA H3 H3 H 0 1 N N N 10.591 -17.164 -28.123 -1.816 2.410 0.646 H3 8BA 26 8BA H4 H4 H 0 1 N N N 10.831 -16.897 -25.134 -0.953 1.334 -2.099 H4 8BA 27 8BA H5 H5 H 0 1 N N N 11.581 -14.838 -25.880 -1.132 3.671 -2.559 H5 8BA 28 8BA H6 H6 H 0 1 N N N 9.196 -14.956 -26.699 1.255 2.000 -1.652 H6 8BA 29 8BA H7 H7 H 0 1 N N N 8.922 -15.640 -25.061 0.727 3.379 -0.638 H7 8BA 30 8BA H8 H8 H 0 1 N N N 7.819 -16.512 -27.584 0.942 2.090 1.249 H8 8BA 31 8BA H9 H9 H 0 1 N N N 9.012 -17.462 -21.591 5.393 1.847 2.633 H9 8BA 32 8BA H11 H11 H 0 1 N N N 4.894 -18.490 -21.109 5.388 -2.527 -0.323 H11 8BA 33 8BA H12 H12 H 0 1 N N N 4.185 -17.638 -22.307 6.705 -2.011 0.584 H12 8BA 34 8BA H13 H13 H 0 1 N N N 11.530 -22.004 -26.662 -5.635 -1.840 2.526 H13 8BA 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8BA BR C8 SING N N 1 8BA "C4'" "O4'" SING N N 2 8BA "C4'" "C5'" SING N N 3 8BA "C4'" "C3'" SING N N 4 8BA "O4'" "C1'" SING N N 5 8BA "C5'" "O5'" SING N N 6 8BA "C1'" "C2'" SING N N 7 8BA "C1'" N9 SING N N 8 8BA "O3'" "C3'" SING N N 9 8BA OP2 P DOUB N N 10 8BA "C3'" "C2'" SING N N 11 8BA C8 N9 SING Y N 12 8BA C8 N7 DOUB Y N 13 8BA N9 C4 SING Y N 14 8BA "O5'" P SING N N 15 8BA P OP1 DOUB N N 16 8BA N7 C5 SING Y N 17 8BA C4 C5 DOUB Y N 18 8BA C4 N3 SING Y N 19 8BA C5 C6 SING Y N 20 8BA N3 C2 DOUB Y N 21 8BA C6 N6 SING N N 22 8BA C6 N1 DOUB Y N 23 8BA C2 N1 SING Y N 24 8BA P O1 SING N N 25 8BA "C5'" H1 SING N N 26 8BA "C5'" H2 SING N N 27 8BA "C4'" H3 SING N N 28 8BA "C3'" H4 SING N N 29 8BA "O3'" H5 SING N N 30 8BA "C2'" H6 SING N N 31 8BA "C2'" H7 SING N N 32 8BA "C1'" H8 SING N N 33 8BA C2 H9 SING N N 34 8BA N6 H11 SING N N 35 8BA N6 H12 SING N N 36 8BA O1 H13 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8BA InChI InChI 1.03 "InChI=1S/C10H12BrN5O6P/c11-10-15-7-8(12)13-3-14-9(7)16(10)6-1-4(17)5(22-6)2-21-23(18,19)20/h3-6,17H,1-2H2,(H2,12,13,14)(H,18,19,20)/t4-,5+,6+/m0/s1" 8BA InChIKey InChI 1.03 MQSWICGOHWVNLL-KVQBGUIXSA-N 8BA SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n([C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)=O)O3)c(Br)nc12" 8BA SMILES CACTVS 3.385 "Nc1ncnc2n([CH]3C[CH](O)[CH](CO[P](O)(=O)=O)O3)c(Br)nc12" 8BA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1nc(c2c(n1)n(c(n2)Br)[C@H]3C[C@@H]([C@H](O3)COP(=O)(=O)O)O)N" 8BA SMILES "OpenEye OEToolkits" 2.0.6 "c1nc(c2c(n1)n(c(n2)Br)C3CC(C(O3)COP(=O)(=O)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 8BA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R},3~{S},5~{R})-5-(6-azanyl-8-bromanyl-purin-9-yl)-2-[[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxymethyl]oxolan-3-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8BA "Create component" 2013-07-16 RCSB 8BA "Initial release" 2013-07-24 RCSB 8BA "Other modification" 2018-09-25 RCSB #