data_8BM # _chem_comp.id 8BM _chem_comp.name "4-(4-{[2-{[(3S)-1-acetylpyrrolidin-3-yl]amino}-9-(propan-2-yl)-9H-purin-6-yl]amino}phenyl)-1-methylpiperazin-1-ium" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H35 N9 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;1-[(3S)-3-{[6-{[4-(4-methylpiperazin-1-yl)phenyl]amino}-9-(propan-2-yl)-9H-purin-2-yl]amino}pyrrolidin-1-yl]ethan-1-one ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-01-17 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 477.605 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8BM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5UGB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8BM C5 C1 C 0 1 N N N 4.404 -50.802 -20.342 1.291 -3.809 1.242 C5 8BM 1 8BM C6 C2 C 0 1 N N N 2.974 -50.836 -19.853 -0.102 -3.412 1.790 C6 8BM 2 8BM C7 C3 C 0 1 N N S 2.192 -50.045 -20.923 -0.483 -2.238 0.850 C7 8BM 3 8BM C8 C4 C 0 1 N N N 3.181 -48.974 -21.336 0.117 -2.671 -0.504 C8 8BM 4 8BM C10 C5 C 0 1 Y N N 0.892 -51.894 -22.020 -2.499 -0.877 0.428 C10 8BM 5 8BM C15 C6 C 0 1 Y N N -1.535 -53.339 -16.954 0.504 1.457 0.878 C15 8BM 6 8BM C17 C7 C 0 1 Y N N -0.328 -51.777 -15.454 2.760 2.014 0.284 C17 8BM 7 8BM C21 C8 C 0 1 N N N -0.586 -49.957 -13.878 4.899 2.691 -0.462 C21 8BM 8 8BM C22 C9 C 0 1 N N N -0.504 -49.712 -12.363 6.393 2.578 -0.147 C22 8BM 9 8BM C24 C10 C 0 1 N N N 1.078 -49.671 -10.422 8.245 1.026 0.008 C24 8BM 10 8BM C26 C11 C 0 1 N N N 1.352 -51.482 -13.746 4.544 0.468 0.428 C26 8BM 11 8BM C1 C12 C 0 1 N N N 6.973 -49.343 -20.772 3.004 -5.245 -0.702 C1 8BM 12 8BM C2 C13 C 0 1 N N N 5.647 -48.728 -21.193 1.941 -4.270 -1.139 C2 8BM 13 8BM O3 O1 O 0 1 N N N 5.622 -47.603 -21.715 1.765 -4.053 -2.319 O3 8BM 14 8BM N4 N1 N 0 1 N N N 4.496 -49.483 -20.961 1.184 -3.641 -0.218 N4 8BM 15 8BM N9 N2 N 0 1 N N N 1.835 -50.856 -22.106 -1.939 -2.101 0.756 N9 8BM 16 8BM N11 N3 N 0 1 Y N N 0.313 -52.138 -20.814 -1.697 0.156 0.204 N11 8BM 17 8BM C12 C14 C 0 1 Y N N -0.607 -53.120 -20.604 -2.187 1.349 -0.114 C12 8BM 18 8BM N13 N4 N 0 1 N N N -1.191 -53.346 -19.353 -1.342 2.421 -0.346 N13 8BM 19 8BM C14 C15 C 0 1 Y N N -0.882 -52.794 -18.091 0.035 2.286 -0.133 C14 8BM 20 8BM C16 C16 C 0 1 Y N N -1.262 -52.839 -15.662 1.862 1.324 1.088 C16 8BM 21 8BM C18 C17 C 0 1 Y N N 0.324 -51.227 -16.603 2.291 2.846 -0.725 C18 8BM 22 8BM C19 C18 C 0 1 Y N N 0.048 -51.727 -17.880 0.933 2.980 -0.934 C19 8BM 23 8BM N20 N5 N 0 1 N N N -0.086 -51.329 -14.134 4.136 1.878 0.496 N20 8BM 24 8BM N23 N6 N 0 1 N N N 0.948 -49.895 -11.899 6.800 1.168 -0.215 N23 8BM 25 8BM C25 C19 C 0 1 N N N 1.488 -51.276 -12.246 6.037 0.355 0.743 C25 8BM 26 8BM C27 C20 C 0 1 Y N N -0.960 -53.911 -21.710 -3.581 1.500 -0.209 C27 8BM 27 8BM N28 N7 N 0 1 Y N N -1.827 -54.947 -21.822 -4.408 2.534 -0.501 N28 8BM 28 8BM C29 C21 C 0 1 Y N N -1.757 -55.293 -23.090 -5.643 2.128 -0.451 C29 8BM 29 8BM N30 N8 N 0 1 Y N N -0.882 -54.529 -23.819 -5.685 0.804 -0.123 N30 8BM 30 8BM C31 C22 C 0 1 N N N -0.668 -54.740 -25.263 -6.891 -0.013 0.030 C31 8BM 31 8BM C32 C23 C 0 1 N N N 0.342 -55.827 -25.563 -7.770 0.576 1.136 C32 8BM 32 8BM C33 C24 C 0 1 N N N -0.272 -53.472 -26.044 -7.670 -0.026 -1.287 C33 8BM 33 8BM C34 C25 C 0 1 Y N N -0.335 -53.611 -22.929 -4.391 0.379 0.036 C34 8BM 34 8BM N35 N9 N 0 1 Y N N 0.591 -52.623 -23.144 -3.816 -0.780 0.344 N35 8BM 35 8BM H1 H1 H 0 1 N N N 4.592 -51.599 -21.076 2.060 -3.150 1.645 H1 8BM 36 8BM H2 H2 H 0 1 N N N 5.112 -50.899 -19.506 1.515 -4.847 1.491 H2 8BM 37 8BM H3 H3 H 0 1 N N N 2.886 -50.353 -18.869 -0.810 -4.235 1.693 H3 8BM 38 8BM H4 H4 H 0 1 N N N 2.608 -51.871 -19.788 -0.034 -3.077 2.825 H4 8BM 39 8BM H5 H5 H 0 1 N N N 1.297 -49.588 -20.475 -0.031 -1.307 1.192 H5 8BM 40 8BM H6 H6 H 0 1 N N N 2.969 -48.033 -20.808 -0.653 -3.137 -1.119 H6 8BM 41 8BM H7 H7 H 0 1 N N N 3.131 -48.804 -22.422 0.532 -1.804 -1.020 H7 8BM 42 8BM H8 H8 H 0 1 N N N -2.246 -54.142 -17.078 -0.194 0.921 1.504 H8 8BM 43 8BM H9 H9 H 0 1 N N N 0.037 -49.224 -14.411 4.589 3.733 -0.383 H9 8BM 44 8BM H10 H10 H 0 1 N N N -1.629 -49.868 -14.217 4.713 2.331 -1.474 H10 8BM 45 8BM H11 H11 H 0 1 N N N -0.836 -48.688 -12.138 6.963 3.157 -0.873 H11 8BM 46 8BM H12 H12 H 0 1 N N N -1.151 -50.431 -11.839 6.583 2.963 0.855 H12 8BM 47 8BM H13 H13 H 0 1 N N N 2.127 -49.809 -10.121 8.501 1.416 0.993 H13 8BM 48 8BM H14 H14 H 0 1 N N N 0.758 -48.648 -10.177 8.520 -0.028 -0.048 H14 8BM 49 8BM H15 H15 H 0 1 N N N 0.444 -50.392 -9.885 8.787 1.583 -0.756 H15 8BM 50 8BM H16 H16 H 0 1 N N N 1.700 -52.491 -14.012 3.974 -0.111 1.155 H16 8BM 51 8BM H17 H17 H 0 1 N N N 1.958 -50.733 -14.277 4.353 0.082 -0.574 H17 8BM 52 8BM H18 H18 H 0 1 N N N 7.792 -48.648 -21.008 2.576 -6.245 -0.636 H18 8BM 53 8BM H19 H19 H 0 1 N N N 6.959 -49.538 -19.690 3.817 -5.245 -1.428 H19 8BM 54 8BM H20 H20 H 0 1 N N N 7.127 -50.288 -21.313 3.389 -4.949 0.274 H20 8BM 55 8BM H21 H21 H 0 1 N N N 2.684 -51.271 -22.432 -2.510 -2.867 0.923 H21 8BM 56 8BM H22 H22 H 0 1 N N N -1.946 -54.002 -19.353 -1.704 3.266 -0.656 H22 8BM 57 8BM H23 H23 H 0 1 N N N -1.770 -53.269 -14.812 2.226 0.683 1.878 H23 8BM 58 8BM H24 H24 H 0 1 N N N 1.033 -50.421 -16.484 2.989 3.389 -1.345 H24 8BM 59 8BM H25 H25 H 0 1 N N N 0.552 -51.295 -18.732 0.569 3.624 -1.720 H25 8BM 60 8BM H27 H27 H 0 1 N N N 0.911 -52.045 -11.712 6.223 0.715 1.755 H27 8BM 61 8BM H28 H28 H 0 1 N N N 2.547 -51.344 -11.956 6.348 -0.687 0.665 H28 8BM 62 8BM H29 H29 H 0 1 N N N -2.333 -56.101 -23.516 -6.507 2.747 -0.641 H29 8BM 63 8BM H30 H30 H 0 1 N N N -1.626 -55.076 -25.685 -6.609 -1.032 0.295 H30 8BM 64 8BM H31 H31 H 0 1 N N N 0.073 -56.740 -25.012 -8.052 1.595 0.871 H31 8BM 65 8BM H32 H32 H 0 1 N N N 0.344 -56.037 -26.643 -8.667 -0.032 1.250 H32 8BM 66 8BM H33 H33 H 0 1 N N N 1.343 -55.493 -25.252 -7.215 0.585 2.074 H33 8BM 67 8BM H34 H34 H 0 1 N N N -0.997 -52.671 -25.836 -8.567 -0.634 -1.173 H34 8BM 68 8BM H35 H35 H 0 1 N N N 0.732 -53.148 -25.732 -7.952 0.993 -1.552 H35 8BM 69 8BM H36 H36 H 0 1 N N N -0.267 -53.692 -27.122 -7.044 -0.445 -2.075 H36 8BM 70 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8BM C33 C31 SING N N 1 8BM C32 C31 SING N N 2 8BM C31 N30 SING N N 3 8BM N30 C29 SING Y N 4 8BM N30 C34 SING Y N 5 8BM N35 C34 DOUB Y N 6 8BM N35 C10 SING Y N 7 8BM C29 N28 DOUB Y N 8 8BM C34 C27 SING Y N 9 8BM N9 C10 SING N N 10 8BM N9 C7 SING N N 11 8BM C10 N11 DOUB Y N 12 8BM N28 C27 SING Y N 13 8BM O3 C2 DOUB N N 14 8BM C27 C12 DOUB Y N 15 8BM C8 N4 SING N N 16 8BM C8 C7 SING N N 17 8BM C2 N4 SING N N 18 8BM C2 C1 SING N N 19 8BM N4 C5 SING N N 20 8BM C7 C6 SING N N 21 8BM N11 C12 SING Y N 22 8BM C12 N13 SING N N 23 8BM C5 C6 SING N N 24 8BM N13 C14 SING N N 25 8BM C14 C19 DOUB Y N 26 8BM C14 C15 SING Y N 27 8BM C19 C18 SING Y N 28 8BM C15 C16 DOUB Y N 29 8BM C18 C17 DOUB Y N 30 8BM C16 C17 SING Y N 31 8BM C17 N20 SING N N 32 8BM N20 C21 SING N N 33 8BM N20 C26 SING N N 34 8BM C21 C22 SING N N 35 8BM C26 C25 SING N N 36 8BM C22 N23 SING N N 37 8BM C25 N23 SING N N 38 8BM N23 C24 SING N N 39 8BM C5 H1 SING N N 40 8BM C5 H2 SING N N 41 8BM C6 H3 SING N N 42 8BM C6 H4 SING N N 43 8BM C7 H5 SING N N 44 8BM C8 H6 SING N N 45 8BM C8 H7 SING N N 46 8BM C15 H8 SING N N 47 8BM C21 H9 SING N N 48 8BM C21 H10 SING N N 49 8BM C22 H11 SING N N 50 8BM C22 H12 SING N N 51 8BM C24 H13 SING N N 52 8BM C24 H14 SING N N 53 8BM C24 H15 SING N N 54 8BM C26 H16 SING N N 55 8BM C26 H17 SING N N 56 8BM C1 H18 SING N N 57 8BM C1 H19 SING N N 58 8BM C1 H20 SING N N 59 8BM N9 H21 SING N N 60 8BM N13 H22 SING N N 61 8BM C16 H23 SING N N 62 8BM C18 H24 SING N N 63 8BM C19 H25 SING N N 64 8BM C25 H27 SING N N 65 8BM C25 H28 SING N N 66 8BM C29 H29 SING N N 67 8BM C31 H30 SING N N 68 8BM C32 H31 SING N N 69 8BM C32 H32 SING N N 70 8BM C32 H33 SING N N 71 8BM C33 H34 SING N N 72 8BM C33 H35 SING N N 73 8BM C33 H36 SING N N 74 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8BM SMILES ACDLabs 12.01 "C1CC(CN1C(C)=O)Nc5nc(Nc3ccc(N2CCN(C)CC2)cc3)c4ncn(c4n5)C(C)C" 8BM InChI InChI 1.03 "InChI=1S/C25H35N9O/c1-17(2)34-16-26-22-23(27-19-5-7-21(8-6-19)32-13-11-31(4)12-14-32)29-25(30-24(22)34)28-20-9-10-33(15-20)18(3)35/h5-8,16-17,20H,9-15H2,1-4H3,(H2,27,28,29,30)/t20-/m0/s1" 8BM InChIKey InChI 1.03 ACTNABQUCQIOKX-FQEVSTJZSA-N 8BM SMILES_CANONICAL CACTVS 3.385 "CC(C)n1cnc2c(Nc3ccc(cc3)N4CCN(C)CC4)nc(N[C@H]5CCN(C5)C(C)=O)nc12" 8BM SMILES CACTVS 3.385 "CC(C)n1cnc2c(Nc3ccc(cc3)N4CCN(C)CC4)nc(N[CH]5CCN(C5)C(C)=O)nc12" 8BM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)n1cnc2c1nc(nc2Nc3ccc(cc3)N4CCN(CC4)C)N[C@H]5CCN(C5)C(=O)C" 8BM SMILES "OpenEye OEToolkits" 2.0.6 "CC(C)n1cnc2c1nc(nc2Nc3ccc(cc3)N4CCN(CC4)C)NC5CCN(C5)C(=O)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 8BM "SYSTEMATIC NAME" ACDLabs 12.01 "1-[(3S)-3-{[6-{[4-(4-methylpiperazin-1-yl)phenyl]amino}-9-(propan-2-yl)-9H-purin-2-yl]amino}pyrrolidin-1-yl]ethan-1-one" 8BM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "1-[(3~{S})-3-[[6-[[4-(4-methylpiperazin-1-yl)phenyl]amino]-9-propan-2-yl-purin-2-yl]amino]pyrrolidin-1-yl]ethanone" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8BM "Create component" 2017-01-17 RCSB 8BM "Initial release" 2017-03-22 RCSB 8BM "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 8BM _pdbx_chem_comp_synonyms.name "1-[(3S)-3-{[6-{[4-(4-methylpiperazin-1-yl)phenyl]amino}-9-(propan-2-yl)-9H-purin-2-yl]amino}pyrrolidin-1-yl]ethan-1-one" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##