data_8BO # _chem_comp.id 8BO _chem_comp.name "(1~{R},3~{R})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-1-[(2~{R},6~{S})-6-(4-hydroxyphenyl)-6-methoxy-hexan-2-yl]-7~{a}-methyl-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-2-methylidene-cyclohexane-1,3-diol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H46 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "25RS-(hydroxyphenyl)-25-methoxy-2-methylidene-19,26,27-trinor-1-hydroxyvitamin D3" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-06-07 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 494.705 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8BO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5XPN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8BO O36 O1 O 0 1 N N N 8.164 -2.160 32.047 -10.587 -2.549 1.219 O36 8BO 1 8BO C33 C1 C 0 1 Y N N 8.394 -1.608 30.814 -9.471 -1.979 0.691 C33 8BO 2 8BO C32 C2 C 0 1 Y N N 9.058 -2.319 29.805 -8.475 -2.776 0.146 C32 8BO 3 8BO C31 C3 C 0 1 Y N N 9.262 -1.722 28.559 -7.342 -2.194 -0.389 C31 8BO 4 8BO C34 C4 C 0 1 Y N N 7.943 -0.315 30.558 -9.330 -0.599 0.692 C34 8BO 5 8BO C35 C5 C 0 1 Y N N 8.145 0.281 29.318 -8.195 -0.022 0.155 C35 8BO 6 8BO C30 C6 C 0 1 Y N N 8.814 -0.423 28.323 -7.201 -0.818 -0.382 C30 8BO 7 8BO C27 C7 C 0 1 N N S 9.013 0.245 27.018 -5.964 -0.186 -0.966 C27 8BO 8 8BO O28 O2 O 0 1 N N N 7.767 0.154 26.343 -6.311 1.053 -1.588 O28 8BO 9 8BO C29 C8 C 0 1 N N N 7.823 -0.735 25.230 -6.664 0.933 -2.967 C29 8BO 10 8BO C26 C9 C 0 1 N N N 9.347 1.733 27.194 -4.947 0.069 0.148 C26 8BO 11 8BO C25 C10 C 0 1 N N N 10.670 2.023 27.905 -3.645 0.595 -0.461 C25 8BO 12 8BO C24 C11 C 0 1 N N N 11.911 1.928 27.007 -2.628 0.850 0.653 C24 8BO 13 8BO C21 C12 C 0 1 N N R 13.113 2.495 27.774 -1.326 1.375 0.045 C21 8BO 14 8BO C22 C13 C 0 1 N N N 13.796 1.467 28.663 -1.577 2.742 -0.595 C22 8BO 15 8BO C20 C14 C 0 1 N N R 14.216 3.189 26.965 -0.269 1.512 1.142 C20 8BO 16 8BO C16 C15 C 0 1 N N R 13.810 4.511 26.328 1.045 2.000 0.552 C16 8BO 17 8BO C23 C16 C 0 1 N N N 12.721 4.326 25.266 1.207 1.432 -0.859 C23 8BO 18 8BO C15 C17 C 0 1 N N N 13.416 5.661 27.260 1.311 3.487 0.525 C15 8BO 19 8BO C14 C18 C 0 1 N N N 13.465 7.012 26.518 2.641 3.707 -0.215 C14 8BO 20 8BO C13 C19 C 0 1 N N N 14.810 7.261 25.812 3.797 2.980 0.469 C13 8BO 21 8BO C19 C20 C 0 1 N N N 14.928 2.427 25.837 0.053 0.124 1.756 C19 8BO 22 8BO C18 C21 C 0 1 N N N 15.689 3.529 25.090 1.584 -0.087 1.579 C18 8BO 23 8BO C17 C22 C 0 1 N N S 15.168 4.816 25.731 2.113 1.348 1.475 C17 8BO 24 8BO C12 C23 C 0 1 N N N 15.040 6.062 24.914 3.423 1.536 0.769 C12 8BO 25 8BO C11 C24 C 0 1 N N N 15.103 6.076 23.563 4.201 0.514 0.429 C11 8BO 26 8BO C10 C25 C 0 1 N N N 14.929 7.297 22.778 5.476 0.758 -0.263 C10 8BO 27 8BO C4 C26 C 0 1 N N N 14.761 7.351 21.434 6.202 -0.266 -0.700 C4 8BO 28 8BO C3 C27 C 0 1 N N N 14.531 8.723 20.827 7.574 -0.038 -1.293 C3 8BO 29 8BO C2 C28 C 0 1 N N R 15.161 8.853 19.438 8.587 -0.896 -0.525 C2 8BO 30 8BO O9 O3 O 0 1 N N N 16.599 8.839 19.480 8.763 -0.367 0.791 O9 8BO 31 8BO C5 C29 C 0 1 N N N 14.740 6.114 20.563 5.673 -1.679 -0.607 C5 8BO 32 8BO C6 C30 C 0 1 N N R 15.105 6.334 19.089 6.690 -2.533 0.160 C6 8BO 33 8BO O8 O4 O 0 1 N N N 14.464 5.319 18.322 6.339 -3.913 0.049 O8 8BO 34 8BO C1 C31 C 0 1 N N N 14.700 7.692 18.595 8.056 -2.308 -0.437 C1 8BO 35 8BO C7 C32 C 0 1 N N N 13.986 7.856 17.491 8.769 -3.319 -0.867 C7 8BO 36 8BO H1 H1 H 0 1 N N N 7.705 -1.534 32.594 -10.514 -2.758 2.160 H1 8BO 37 8BO H2 H2 H 0 1 N N N 9.410 -3.323 29.990 -8.585 -3.850 0.140 H2 8BO 38 8BO H3 H3 H 0 1 N N N 9.768 -2.268 27.776 -6.566 -2.813 -0.814 H3 8BO 39 8BO H4 H4 H 0 1 N N N 7.429 0.233 31.334 -10.106 0.024 1.112 H4 8BO 40 8BO H5 H5 H 0 1 N N N 7.785 1.282 29.129 -8.084 1.053 0.155 H5 8BO 41 8BO H6 H6 H 0 1 N N N 9.814 -0.251 26.450 -5.530 -0.856 -1.709 H6 8BO 42 8BO H7 H7 H 0 1 N N N 6.839 -0.773 24.740 -6.914 1.916 -3.365 H7 8BO 43 8BO H8 H8 H 0 1 N N N 8.576 -0.377 24.512 -5.824 0.518 -3.523 H8 8BO 44 8BO H9 H9 H 0 1 N N N 8.098 -1.741 25.578 -7.526 0.272 -3.065 H9 8BO 45 8BO H10 H10 H 0 1 N N N 9.389 2.193 26.196 -5.347 0.807 0.843 H10 8BO 46 8BO H11 H11 H 0 1 N N N 8.538 2.197 27.778 -4.749 -0.862 0.679 H11 8BO 47 8BO H12 H12 H 0 1 N N N 10.784 1.300 28.726 -3.245 -0.144 -1.156 H12 8BO 48 8BO H13 H13 H 0 1 N N N 10.622 3.042 28.318 -3.842 1.525 -0.993 H13 8BO 49 8BO H14 H14 H 0 1 N N N 11.749 2.510 26.088 -3.028 1.588 1.349 H14 8BO 50 8BO H15 H15 H 0 1 N N N 12.100 0.876 26.746 -2.431 -0.081 1.185 H15 8BO 51 8BO H16 H16 H 0 1 N N N 12.706 3.261 28.450 -0.973 0.678 -0.715 H16 8BO 52 8BO H17 H17 H 0 1 N N N 13.040 0.942 29.265 -1.931 3.439 0.165 H17 8BO 53 8BO H18 H18 H 0 1 N N N 14.335 0.741 28.037 -0.650 3.117 -1.028 H18 8BO 54 8BO H19 H19 H 0 1 N N N 14.508 1.975 29.331 -2.331 2.645 -1.377 H19 8BO 55 8BO H20 H20 H 0 1 N N N 15.002 3.439 27.693 -0.614 2.197 1.916 H20 8BO 56 8BO H21 H21 H 0 1 N N N 11.762 4.108 25.758 0.462 1.879 -1.518 H21 8BO 57 8BO H22 H22 H 0 1 N N N 12.627 5.247 24.673 2.205 1.661 -1.231 H22 8BO 58 8BO H23 H23 H 0 1 N N N 12.992 3.490 24.605 1.068 0.351 -0.834 H23 8BO 59 8BO H24 H24 H 0 1 N N N 12.394 5.490 27.631 0.505 3.997 -0.002 H24 8BO 60 8BO H25 H25 H 0 1 N N N 14.114 5.691 28.110 1.385 3.868 1.544 H25 8BO 61 8BO H26 H26 H 0 1 N N N 13.297 7.819 27.247 2.544 3.339 -1.236 H26 8BO 62 8BO H27 H27 H 0 1 N N N 12.665 7.027 25.763 2.860 4.775 -0.242 H27 8BO 63 8BO H28 H28 H 0 1 N N N 15.620 7.345 26.552 4.668 2.997 -0.185 H28 8BO 64 8BO H29 H29 H 0 1 N N N 14.762 8.183 25.214 4.039 3.489 1.402 H29 8BO 65 8BO H30 H30 H 0 1 N N N 14.201 1.933 25.176 -0.206 0.114 2.815 H30 8BO 66 8BO H31 H31 H 0 1 N N N 15.621 1.677 26.245 -0.497 -0.655 1.229 H31 8BO 67 8BO H32 H32 H 0 1 N N N 15.461 3.505 24.014 2.008 -0.594 2.445 H32 8BO 68 8BO H33 H33 H 0 1 N N N 16.774 3.427 25.237 1.793 -0.643 0.664 H33 8BO 69 8BO H34 H34 H 0 1 N N N 15.841 5.047 26.570 2.124 1.827 2.454 H34 8BO 70 8BO H35 H35 H 0 1 N N N 15.289 5.148 23.043 3.898 -0.496 0.661 H35 8BO 71 8BO H36 H36 H 0 1 N N N 14.935 8.235 23.314 5.822 1.770 -0.417 H36 8BO 72 8BO H37 H37 H 0 1 N N N 14.973 9.482 21.489 7.571 -0.328 -2.344 H37 8BO 73 8BO H38 H38 H 0 1 N N N 13.448 8.896 20.743 7.840 1.015 -1.205 H38 8BO 74 8BO H39 H39 H 0 1 N N N 14.810 9.789 18.979 9.542 -0.893 -1.050 H39 8BO 75 8BO H40 H40 H 0 1 N N N 16.908 9.566 20.008 9.392 -0.863 1.334 H40 8BO 76 8BO H41 H41 H 0 1 N N N 13.725 5.691 20.601 4.721 -1.679 -0.076 H41 8BO 77 8BO H42 H42 H 0 1 N N N 15.454 5.391 20.984 5.533 -2.084 -1.609 H42 8BO 78 8BO H43 H43 H 0 1 N N N 16.196 6.237 18.989 6.697 -2.240 1.210 H43 8BO 79 8BO H44 H44 H 0 1 N N N 14.728 4.465 18.643 6.941 -4.511 0.512 H44 8BO 80 8BO H45 H45 H 0 1 N N N 13.714 8.850 17.166 8.381 -4.324 -0.794 H45 8BO 81 8BO H46 H46 H 0 1 N N N 13.676 6.996 16.916 9.747 -3.148 -1.293 H46 8BO 82 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8BO C7 C1 DOUB N N 1 8BO O8 C6 SING N N 2 8BO C1 C6 SING N N 3 8BO C1 C2 SING N N 4 8BO C6 C5 SING N N 5 8BO C2 O9 SING N N 6 8BO C2 C3 SING N N 7 8BO C5 C4 SING N N 8 8BO C3 C4 SING N N 9 8BO C4 C10 DOUB N N 10 8BO C10 C11 SING N N 11 8BO C11 C12 DOUB N E 12 8BO C12 C17 SING N N 13 8BO C12 C13 SING N N 14 8BO C18 C17 SING N N 15 8BO C18 C19 SING N N 16 8BO C29 O28 SING N N 17 8BO C23 C16 SING N N 18 8BO C17 C16 SING N N 19 8BO C13 C14 SING N N 20 8BO C19 C20 SING N N 21 8BO C16 C20 SING N N 22 8BO C16 C15 SING N N 23 8BO O28 C27 SING N N 24 8BO C14 C15 SING N N 25 8BO C20 C21 SING N N 26 8BO C24 C21 SING N N 27 8BO C24 C25 SING N N 28 8BO C27 C26 SING N N 29 8BO C27 C30 SING N N 30 8BO C26 C25 SING N N 31 8BO C21 C22 SING N N 32 8BO C30 C31 DOUB Y N 33 8BO C30 C35 SING Y N 34 8BO C31 C32 SING Y N 35 8BO C35 C34 DOUB Y N 36 8BO C32 C33 DOUB Y N 37 8BO C34 C33 SING Y N 38 8BO C33 O36 SING N N 39 8BO O36 H1 SING N N 40 8BO C32 H2 SING N N 41 8BO C31 H3 SING N N 42 8BO C34 H4 SING N N 43 8BO C35 H5 SING N N 44 8BO C27 H6 SING N N 45 8BO C29 H7 SING N N 46 8BO C29 H8 SING N N 47 8BO C29 H9 SING N N 48 8BO C26 H10 SING N N 49 8BO C26 H11 SING N N 50 8BO C25 H12 SING N N 51 8BO C25 H13 SING N N 52 8BO C24 H14 SING N N 53 8BO C24 H15 SING N N 54 8BO C21 H16 SING N N 55 8BO C22 H17 SING N N 56 8BO C22 H18 SING N N 57 8BO C22 H19 SING N N 58 8BO C20 H20 SING N N 59 8BO C23 H21 SING N N 60 8BO C23 H22 SING N N 61 8BO C23 H23 SING N N 62 8BO C15 H24 SING N N 63 8BO C15 H25 SING N N 64 8BO C14 H26 SING N N 65 8BO C14 H27 SING N N 66 8BO C13 H28 SING N N 67 8BO C13 H29 SING N N 68 8BO C19 H30 SING N N 69 8BO C19 H31 SING N N 70 8BO C18 H32 SING N N 71 8BO C18 H33 SING N N 72 8BO C17 H34 SING N N 73 8BO C11 H35 SING N N 74 8BO C10 H36 SING N N 75 8BO C3 H37 SING N N 76 8BO C3 H38 SING N N 77 8BO C2 H39 SING N N 78 8BO O9 H40 SING N N 79 8BO C5 H41 SING N N 80 8BO C5 H42 SING N N 81 8BO C6 H43 SING N N 82 8BO O8 H44 SING N N 83 8BO C7 H45 SING N N 84 8BO C7 H46 SING N N 85 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8BO InChI InChI 1.03 "InChI=1S/C32H46O4/c1-21(7-5-9-31(36-4)25-12-14-26(33)15-13-25)27-16-17-28-24(8-6-18-32(27,28)3)11-10-23-19-29(34)22(2)30(35)20-23/h10-15,21,27-31,33-35H,2,5-9,16-20H2,1,3-4H3/b24-11+/t21-,27-,28+,29-,30-,31+,32-/m1/s1" 8BO InChIKey InChI 1.03 LNLTYAYGVNOEBQ-CLQLOTFESA-N 8BO SMILES_CANONICAL CACTVS 3.385 "CO[C@@H](CCC[C@@H](C)[C@H]1CC[C@H]2C(/CCC[C@]12C)=C/C=C3/C[C@@H](O)C(=C)[C@H](O)C3)c4ccc(O)cc4" 8BO SMILES CACTVS 3.385 "CO[CH](CCC[CH](C)[CH]1CC[CH]2C(CCC[C]12C)=CC=C3C[CH](O)C(=C)[CH](O)C3)c4ccc(O)cc4" 8BO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@H](CCC[C@@H](c1ccc(cc1)O)OC)[C@H]2CC[C@@H]\3[C@@]2(CCC/C3=C\C=C4C[C@H](C(=C)[C@@H](C4)O)O)C" 8BO SMILES "OpenEye OEToolkits" 2.0.6 "CC(CCCC(c1ccc(cc1)O)OC)C2CCC3C2(CCCC3=CC=C4CC(C(=C)C(C4)O)O)C" # _pdbx_chem_comp_identifier.comp_id 8BO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "(1~{R},3~{R})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-1-[(2~{R},6~{S})-6-(4-hydroxyphenyl)-6-methoxy-hexan-2-yl]-7~{a}-methyl-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-2-methylidene-cyclohexane-1,3-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8BO "Create component" 2017-06-07 PDBJ 8BO "Initial release" 2018-07-11 RCSB 8BO "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 8BO _pdbx_chem_comp_synonyms.name "25RS-(hydroxyphenyl)-25-methoxy-2-methylidene-19,26,27-trinor-1-hydroxyvitamin D3" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##