data_8C9 # _chem_comp.id 8C9 _chem_comp.name ;(4~{S})-4-[(1~{R})-1-[(1~{R},3~{a}~{S},4~{E},7~{a}~{R})-7~{a}-methyl-4-[2-[(3~{R},5~{R})-4-methylidene-3,5-bis(oxidanyl )cyclohexylidene]ethylidene]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-1-yl]ethyl]-1-(4-hydroxyphenyl)octan-1-one ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H50 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "22S-butyl-25-hydroxyphenyl-2-methylidene-19,26,27-trinor-25-oxo-1-hydroxyvitamin D3" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-06-07 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 534.769 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8C9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5XPL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8C9 O3 O1 O 0 1 N N N 6.178 -2.816 13.283 6.167 0.817 -0.467 O3 8C9 1 8C9 C22 C1 C 0 1 N N N 7.179 -2.982 14.009 5.099 1.335 -0.221 C22 8C9 2 8C9 C23 C2 C 0 1 Y N N 7.699 -4.387 14.264 4.971 2.798 -0.238 C23 8C9 3 8C9 C28 C3 C 0 1 Y N N 7.048 -5.466 13.657 3.740 3.399 0.052 C28 8C9 4 8C9 C27 C4 C 0 1 Y N N 7.522 -6.774 13.827 3.627 4.766 0.035 C27 8C9 5 8C9 C26 C5 C 0 1 Y N N 8.639 -7.005 14.626 4.731 5.554 -0.269 C26 8C9 6 8C9 O4 O2 O 0 1 N N N 9.071 -8.281 14.770 4.614 6.906 -0.284 O4 8C9 7 8C9 C25 C6 C 0 1 Y N N 9.298 -5.941 15.250 5.956 4.962 -0.557 C25 8C9 8 8C9 C24 C7 C 0 1 Y N N 8.831 -4.639 15.067 6.082 3.597 -0.538 C24 8C9 9 8C9 C21 C8 C 0 1 N N N 7.936 -1.805 14.629 3.901 0.478 0.096 C21 8C9 10 8C9 C20 C9 C 0 1 N N N 7.764 -0.523 13.846 4.300 -0.998 0.040 C20 8C9 11 8C9 C19 C10 C 0 1 N N S 8.463 0.661 14.564 3.120 -1.863 0.488 C19 8C9 12 8C9 C31 C11 C 0 1 N N N 7.841 0.943 15.946 3.553 -3.330 0.537 C31 8C9 13 8C9 C32 C12 C 0 1 N N N 8.789 0.501 17.045 4.611 -3.513 1.628 C32 8C9 14 8C9 C33 C13 C 0 1 N N N 7.988 -0.271 18.060 5.124 -4.954 1.603 C33 8C9 15 8C9 C34 C14 C 0 1 N N N 7.360 0.570 19.148 6.182 -5.136 2.694 C34 8C9 16 8C9 C18 C15 C 0 1 N N R 8.447 1.910 13.706 1.967 -1.705 -0.505 C18 8C9 17 8C9 C30 C16 C 0 1 N N N 7.009 2.443 13.513 2.407 -2.205 -1.882 C30 8C9 18 8C9 C17 C17 C 0 1 N N R 9.473 2.961 14.180 0.766 -2.522 -0.026 C17 8C9 19 8C9 C13 C18 C 0 1 N N R 9.451 4.281 13.447 -0.438 -2.267 -0.919 C13 8C9 20 8C9 C29 C19 C 0 1 N N N 9.333 4.117 11.908 -0.398 -0.821 -1.419 C29 8C9 21 8C9 C12 C20 C 0 1 N N N 8.451 5.315 13.966 -0.664 -3.184 -2.099 C12 8C9 22 8C9 C11 C21 C 0 1 N N N 8.734 6.720 13.377 -1.867 -2.639 -2.886 C11 8C9 23 8C9 C10 C22 C 0 1 N N N 10.199 7.257 13.494 -3.126 -2.575 -2.023 C10 8C9 24 8C9 C16 C23 C 0 1 N N N 10.939 2.480 14.169 0.327 -2.057 1.387 C16 8C9 25 8C9 C15 C24 C 0 1 N N N 11.821 3.641 13.750 -1.166 -1.640 1.266 C15 8C9 26 8C9 C14 C25 C 0 1 N N S 10.829 4.803 13.822 -1.643 -2.440 0.048 C14 8C9 27 8C9 C9 C26 C 0 1 N N N 11.140 6.113 13.120 -2.832 -1.902 -0.690 C9 8C9 28 8C9 C8 C27 C 0 1 N N N 12.181 6.196 12.245 -3.575 -0.909 -0.215 C8 8C9 29 8C9 C7 C28 C 0 1 N N N 12.460 7.379 11.452 -4.731 -0.421 -0.984 C7 8C9 30 8C9 C5 C29 C 0 1 N N N 13.018 7.368 10.226 -5.415 0.635 -0.558 C5 8C9 31 8C9 C6 C30 C 0 1 N N N 13.451 6.079 9.545 -6.683 1.064 -1.260 C6 8C9 32 8C9 C1 C31 C 0 1 N N R 14.704 6.257 8.670 -7.817 1.123 -0.228 C1 8C9 33 8C9 O1 O3 O 0 1 N N N 14.823 5.132 7.785 -8.165 -0.202 0.179 O1 8C9 34 8C9 C4 C32 C 0 1 N N N 13.122 8.703 9.495 -4.942 1.425 0.641 C4 8C9 35 8C9 C3 C33 C 0 1 N N R 14.455 8.843 8.762 -6.080 1.483 1.669 C3 8C9 36 8C9 O2 O4 O 0 1 N N N 15.595 8.921 9.673 -5.755 2.426 2.692 O2 8C9 37 8C9 C2 C34 C 0 1 N N N 14.674 7.588 7.921 -7.341 1.917 0.967 C2 8C9 38 8C9 C35 C35 C 0 1 N N N 14.801 7.666 6.612 -8.016 2.958 1.388 C35 8C9 39 8C9 H1 H1 H 0 1 N N N 6.171 -5.289 13.051 2.882 2.788 0.287 H1 8C9 40 8C9 H2 H2 H 0 1 N N N 7.023 -7.599 13.340 2.678 5.231 0.259 H2 8C9 41 8C9 H3 H3 H 0 1 N N N 9.834 -8.296 15.336 4.795 7.326 0.568 H3 8C9 42 8C9 H4 H4 H 0 1 N N N 10.163 -6.126 15.870 6.811 5.579 -0.793 H4 8C9 43 8C9 H5 H5 H 0 1 N N N 9.341 -3.816 15.545 7.035 3.138 -0.758 H5 8C9 44 8C9 H6 H6 H 0 1 N N N 9.007 -2.055 14.664 3.536 0.718 1.095 H6 8C9 45 8C9 H7 H7 H 0 1 N N N 7.563 -1.646 15.651 3.114 0.669 -0.634 H7 8C9 46 8C9 H8 H8 H 0 1 N N N 6.691 -0.302 13.748 4.577 -1.261 -0.980 H8 8C9 47 8C9 H9 H9 H 0 1 N N N 8.205 -0.649 12.846 5.149 -1.170 0.703 H9 8C9 48 8C9 H10 H10 H 0 1 N N N 9.513 0.375 14.725 2.793 -1.547 1.478 H10 8C9 49 8C9 H11 H11 H 0 1 N N N 7.647 2.021 16.045 2.689 -3.956 0.760 H11 8C9 50 8C9 H12 H12 H 0 1 N N N 6.894 0.391 16.038 3.972 -3.618 -0.427 H12 8C9 51 8C9 H13 H13 H 0 1 N N N 9.577 -0.140 16.624 5.440 -2.828 1.448 H13 8C9 52 8C9 H14 H14 H 0 1 N N N 9.247 1.381 17.520 4.169 -3.300 2.601 H14 8C9 53 8C9 H15 H15 H 0 1 N N N 7.183 -0.800 17.529 4.295 -5.638 1.783 H15 8C9 54 8C9 H16 H16 H 0 1 N N N 8.656 -1.004 18.537 5.566 -5.166 0.630 H16 8C9 55 8C9 H17 H17 H 0 1 N N N 6.799 -0.079 19.836 6.548 -6.163 2.677 H17 8C9 56 8C9 H18 H18 H 0 1 N N N 8.148 1.099 19.703 7.011 -4.452 2.514 H18 8C9 57 8C9 H19 H19 H 0 1 N N N 6.675 1.303 18.696 5.740 -4.924 3.668 H19 8C9 58 8C9 H20 H20 H 0 1 N N N 8.784 1.595 12.707 1.687 -0.654 -0.573 H20 8C9 59 8C9 H21 H21 H 0 1 N N N 6.356 1.624 13.176 3.263 -1.623 -2.224 H21 8C9 60 8C9 H22 H22 H 0 1 N N N 6.635 2.841 14.468 2.687 -3.257 -1.815 H22 8C9 61 8C9 H23 H23 H 0 1 N N N 7.013 3.243 12.758 1.586 -2.093 -2.590 H23 8C9 62 8C9 H24 H24 H 0 1 N N N 9.228 3.179 15.230 1.011 -3.584 -0.016 H24 8C9 63 8C9 H25 H25 H 0 1 N N N 8.331 3.739 11.655 -0.170 -0.155 -0.586 H25 8C9 64 8C9 H26 H26 H 0 1 N N N 9.491 5.091 11.422 0.371 -0.722 -2.184 H26 8C9 65 8C9 H27 H27 H 0 1 N N N 10.093 3.404 11.556 -1.367 -0.556 -1.841 H27 8C9 66 8C9 H28 H28 H 0 1 N N N 8.524 5.365 15.062 0.221 -3.192 -2.735 H28 8C9 67 8C9 H29 H29 H 0 1 N N N 7.435 5.005 13.680 -0.876 -4.193 -1.747 H29 8C9 68 8C9 H30 H30 H 0 1 N N N 8.076 7.435 13.893 -1.633 -1.638 -3.247 H30 8C9 69 8C9 H31 H31 H 0 1 N N N 8.476 6.690 12.308 -2.056 -3.288 -3.741 H31 8C9 70 8C9 H32 H32 H 0 1 N N N 10.398 7.584 14.525 -3.894 -2.008 -2.550 H32 8C9 71 8C9 H33 H33 H 0 1 N N N 10.345 8.103 12.806 -3.489 -3.587 -1.842 H33 8C9 72 8C9 H34 H34 H 0 1 N N N 11.053 1.651 13.455 0.430 -2.876 2.100 H34 8C9 73 8C9 H35 H35 H 0 1 N N N 11.226 2.140 15.175 0.930 -1.207 1.705 H35 8C9 74 8C9 H36 H36 H 0 1 N N N 12.210 3.505 12.730 -1.722 -1.927 2.159 H36 8C9 75 8C9 H37 H37 H 0 1 N N N 12.660 3.783 14.447 -1.253 -0.569 1.083 H37 8C9 76 8C9 H38 H38 H 0 1 N N N 10.761 5.056 14.890 -1.784 -3.489 0.309 H38 8C9 77 8C9 H39 H39 H 0 1 N N N 12.830 5.340 12.136 -3.331 -0.459 0.736 H39 8C9 78 8C9 H40 H40 H 0 1 N N N 12.201 8.338 11.876 -5.023 -0.922 -1.895 H40 8C9 79 8C9 H41 H41 H 0 1 N N N 12.627 5.723 8.910 -6.540 2.049 -1.703 H41 8C9 80 8C9 H42 H42 H 0 1 N N N 13.667 5.328 10.319 -6.931 0.344 -2.039 H42 8C9 81 8C9 H43 H43 H 0 1 N N N 15.576 6.273 9.341 -8.687 1.611 -0.668 H43 8C9 82 8C9 H44 H44 H 0 1 N N N 14.838 4.329 8.293 -8.877 -0.238 0.832 H44 8C9 83 8C9 H45 H45 H 0 1 N N N 13.030 9.519 10.227 -4.075 0.934 1.084 H45 8C9 84 8C9 H46 H46 H 0 1 N N N 12.304 8.774 8.763 -4.673 2.434 0.332 H46 8C9 85 8C9 H47 H47 H 0 1 N N N 14.424 9.726 8.106 -6.224 0.497 2.111 H47 8C9 86 8C9 H48 H48 H 0 1 N N N 15.509 9.690 10.224 -6.433 2.513 3.376 H48 8C9 87 8C9 H49 H49 H 0 1 N N N 14.751 8.627 6.121 -8.920 3.257 0.879 H49 8C9 88 8C9 H50 H50 H 0 1 N N N 14.956 6.769 6.030 -7.667 3.518 2.243 H50 8C9 89 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8C9 C35 C2 DOUB N N 1 8C9 O1 C1 SING N N 2 8C9 C2 C1 SING N N 3 8C9 C2 C3 SING N N 4 8C9 C1 C6 SING N N 5 8C9 C3 C4 SING N N 6 8C9 C3 O2 SING N N 7 8C9 C4 C5 SING N N 8 8C9 C6 C5 SING N N 9 8C9 C5 C7 DOUB N N 10 8C9 C7 C8 SING N N 11 8C9 C29 C13 SING N N 12 8C9 C8 C9 DOUB N E 13 8C9 C9 C10 SING N N 14 8C9 C9 C14 SING N N 15 8C9 O3 C22 DOUB N N 16 8C9 C11 C10 SING N N 17 8C9 C11 C12 SING N N 18 8C9 C13 C14 SING N N 19 8C9 C13 C12 SING N N 20 8C9 C13 C17 SING N N 21 8C9 C30 C18 SING N N 22 8C9 C28 C27 DOUB Y N 23 8C9 C28 C23 SING Y N 24 8C9 C18 C17 SING N N 25 8C9 C18 C19 SING N N 26 8C9 C15 C14 SING N N 27 8C9 C15 C16 SING N N 28 8C9 C27 C26 SING Y N 29 8C9 C20 C19 SING N N 30 8C9 C20 C21 SING N N 31 8C9 C22 C23 SING N N 32 8C9 C22 C21 SING N N 33 8C9 C16 C17 SING N N 34 8C9 C23 C24 DOUB Y N 35 8C9 C19 C31 SING N N 36 8C9 C26 O4 SING N N 37 8C9 C26 C25 DOUB Y N 38 8C9 C24 C25 SING Y N 39 8C9 C31 C32 SING N N 40 8C9 C32 C33 SING N N 41 8C9 C33 C34 SING N N 42 8C9 C28 H1 SING N N 43 8C9 C27 H2 SING N N 44 8C9 O4 H3 SING N N 45 8C9 C25 H4 SING N N 46 8C9 C24 H5 SING N N 47 8C9 C21 H6 SING N N 48 8C9 C21 H7 SING N N 49 8C9 C20 H8 SING N N 50 8C9 C20 H9 SING N N 51 8C9 C19 H10 SING N N 52 8C9 C31 H11 SING N N 53 8C9 C31 H12 SING N N 54 8C9 C32 H13 SING N N 55 8C9 C32 H14 SING N N 56 8C9 C33 H15 SING N N 57 8C9 C33 H16 SING N N 58 8C9 C34 H17 SING N N 59 8C9 C34 H18 SING N N 60 8C9 C34 H19 SING N N 61 8C9 C18 H20 SING N N 62 8C9 C30 H21 SING N N 63 8C9 C30 H22 SING N N 64 8C9 C30 H23 SING N N 65 8C9 C17 H24 SING N N 66 8C9 C29 H25 SING N N 67 8C9 C29 H26 SING N N 68 8C9 C29 H27 SING N N 69 8C9 C12 H28 SING N N 70 8C9 C12 H29 SING N N 71 8C9 C11 H30 SING N N 72 8C9 C11 H31 SING N N 73 8C9 C10 H32 SING N N 74 8C9 C10 H33 SING N N 75 8C9 C16 H34 SING N N 76 8C9 C16 H35 SING N N 77 8C9 C15 H36 SING N N 78 8C9 C15 H37 SING N N 79 8C9 C14 H38 SING N N 80 8C9 C8 H39 SING N N 81 8C9 C7 H40 SING N N 82 8C9 C6 H41 SING N N 83 8C9 C6 H42 SING N N 84 8C9 C1 H43 SING N N 85 8C9 O1 H44 SING N N 86 8C9 C4 H45 SING N N 87 8C9 C4 H46 SING N N 88 8C9 C3 H47 SING N N 89 8C9 O2 H48 SING N N 90 8C9 C35 H49 SING N N 91 8C9 C35 H50 SING N N 92 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8C9 InChI InChI 1.03 "InChI=1S/C35H50O4/c1-5-6-8-26(14-19-32(37)28-12-15-29(36)16-13-28)23(2)30-17-18-31-27(9-7-20-35(30,31)4)11-10-25-21-33(38)24(3)34(39)22-25/h10-13,15-16,23,26,30-31,33-34,36,38-39H,3,5-9,14,17-22H2,1-2,4H3/b27-11+/t23-,26+,30-,31+,33-,34-,35-/m1/s1" 8C9 InChIKey InChI 1.03 IDKWEPILMVJEEL-HXCBKPQPSA-N 8C9 SMILES_CANONICAL CACTVS 3.385 "CCCC[C@@H](CCC(=O)c1ccc(O)cc1)[C@@H](C)[C@H]2CC[C@H]3C(/CCC[C@]23C)=C/C=C4\C[C@@H](O)C(=C)[C@H](O)C4" 8C9 SMILES CACTVS 3.385 "CCCC[CH](CCC(=O)c1ccc(O)cc1)[CH](C)[CH]2CC[CH]3C(CCC[C]23C)=CC=C4C[CH](O)C(=C)[CH](O)C4" 8C9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCCC[C@@H](CCC(=O)c1ccc(cc1)O)[C@@H](C)[C@H]2CC[C@@H]\3[C@@]2(CCC/C3=C\C=C4C[C@H](C(=C)[C@@H](C4)O)O)C" 8C9 SMILES "OpenEye OEToolkits" 2.0.6 "CCCCC(CCC(=O)c1ccc(cc1)O)C(C)C2CCC3C2(CCCC3=CC=C4CC(C(=C)C(C4)O)O)C" # _pdbx_chem_comp_identifier.comp_id 8C9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "(4~{S})-4-[(1~{R})-1-[(1~{R},3~{a}~{S},4~{E},7~{a}~{R})-7~{a}-methyl-4-[2-[(3~{R},5~{R})-4-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-1-yl]ethyl]-1-(4-hydroxyphenyl)octan-1-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8C9 "Create component" 2017-06-07 PDBJ 8C9 "Initial release" 2018-06-06 RCSB 8C9 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 8C9 _pdbx_chem_comp_synonyms.name "22S-butyl-25-hydroxyphenyl-2-methylidene-19,26,27-trinor-25-oxo-1-hydroxyvitamin D3" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##