data_8DG # _chem_comp.id 8DG _chem_comp.name "8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H16 N5 O14 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-12-16 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 523.180 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8DG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1WUR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8DG PG PG P 0 1 N N N -29.492 -16.582 1.305 7.176 -0.637 -0.503 PG 8DG 1 8DG O1G O1G O 0 1 N N N -30.013 -16.457 -0.094 7.049 0.728 0.054 O1G 8DG 2 8DG O2G O2G O 0 1 N N N -29.700 -15.336 2.117 7.698 -1.638 0.644 O2G 8DG 3 8DG O3G O3G O 0 1 N N N -28.002 -16.930 1.270 8.227 -0.623 -1.723 O3G 8DG 4 8DG O3B O3B O 0 1 N N N -30.305 -17.752 2.043 5.741 -1.134 -1.038 O3B 8DG 5 8DG PB PB P 0 1 N N S -30.864 -19.147 1.449 4.647 -0.634 0.033 PB 8DG 6 8DG O1B O1B O 0 1 N N N -29.839 -19.786 0.602 4.923 0.774 0.399 O1B 8DG 7 8DG O2B O2B O 0 1 N N N -32.136 -18.921 0.737 4.724 -1.556 1.350 O2B 8DG 8 8DG O3A O3A O 0 1 N N N -31.095 -20.048 2.732 3.176 -0.741 -0.612 O3A 8DG 9 8DG PA PA P 0 1 N N R -31.481 -19.774 4.277 2.220 0.231 0.244 PA 8DG 10 8DG O1A O1A O 0 1 N N N -31.744 -21.095 4.921 2.905 1.524 0.468 O1A 8DG 11 8DG O2A O2A O 0 1 N N N -32.618 -18.813 4.301 1.890 -0.454 1.662 O2A 8DG 12 8DG "O5'" O5* O 0 1 N N N -30.136 -19.112 4.809 0.850 0.482 -0.563 "O5'" 8DG 13 8DG "C5'" C5* C 0 1 N N N -28.922 -19.853 5.004 0.099 1.439 0.187 "C5'" 8DG 14 8DG "C4'" C4* C 0 1 N N R -27.991 -19.009 5.835 -1.223 1.724 -0.529 "C4'" 8DG 15 8DG "O4'" O4* O 0 1 N N N -26.764 -19.705 6.207 -2.110 0.586 -0.441 "O4'" 8DG 16 8DG "C3'" C3* C 0 1 N N S -27.513 -17.711 5.143 -2.004 2.851 0.194 "C3'" 8DG 17 8DG "O3'" O3* O 0 1 N N N -28.030 -16.574 5.825 -1.587 4.138 -0.266 "O3'" 8DG 18 8DG "C2'" C2* C 0 1 N N N -26.014 -17.798 5.202 -3.464 2.559 -0.230 "C2'" 8DG 19 8DG "C1'" C1* C 0 1 N N R -25.849 -18.654 6.406 -3.443 1.078 -0.657 "C1'" 8DG 20 8DG N9 N9 N 0 1 N N N -24.497 -19.176 6.624 -4.394 0.313 0.153 N9 8DG 21 8DG C8 C8 C 0 1 N N N -23.683 -19.861 5.742 -4.308 0.111 1.481 C8 8DG 22 8DG N7 N7 N 0 1 N N N -22.515 -20.165 6.259 -5.352 -0.636 1.890 N7 8DG 23 8DG C5 C5 C 0 1 N N N -22.572 -19.650 7.556 -6.138 -0.923 0.772 C5 8DG 24 8DG C6 C6 C 0 1 N N N -21.612 -19.651 8.610 -7.325 -1.644 0.574 C6 8DG 25 8DG O6 O6 O 0 1 N N N -20.470 -20.113 8.632 -7.890 -2.187 1.510 O6 8DG 26 8DG N1 N1 N 0 1 N N N -22.103 -19.017 9.766 -7.832 -1.720 -0.677 N1 8DG 27 8DG C2 C2 C 0 1 N N N -23.363 -18.455 9.867 -7.189 -1.114 -1.713 C2 8DG 28 8DG N2 N2 N 0 1 N N N -23.664 -17.896 11.049 -7.718 -1.208 -2.975 N2 8DG 29 8DG N3 N3 N 0 1 N N N -24.245 -18.443 8.895 -6.076 -0.437 -1.534 N3 8DG 30 8DG C4 C4 C 0 1 N N N -23.791 -19.053 7.774 -5.526 -0.320 -0.320 C4 8DG 31 8DG O8 O8 O 0 1 N N N -24.076 -20.124 4.599 -3.424 0.538 2.201 O8 8DG 32 8DG HOG2 2HOG H 0 0 N N N -29.370 -15.415 3.004 7.766 -2.514 0.240 HOG2 8DG 33 8DG H3G H3G H 0 1 N N N -27.672 -17.009 2.157 9.071 -0.321 -1.361 H3G 8DG 34 8DG HOB2 2HOB H 0 0 N N N -32.465 -19.741 0.388 4.539 -2.462 1.068 HOB2 8DG 35 8DG HOA2 2HOA H 0 0 N N N -32.845 -18.652 5.209 1.445 -1.292 1.472 HOA2 8DG 36 8DG "H5'1" 1H5* H 0 0 N N N -28.461 -20.187 4.045 0.671 2.363 0.274 "H5'1" 8DG 37 8DG "H5'2" 2H5* H 0 0 N N N -29.098 -20.862 5.444 -0.105 1.043 1.181 "H5'2" 8DG 38 8DG "H4'" H4* H 0 1 N N N -28.625 -18.773 6.721 -1.045 1.989 -1.571 "H4'" 8DG 39 8DG "H3'" H3* H 0 1 N N N -27.867 -17.604 4.091 -1.890 2.771 1.275 "H3'" 8DG 40 8DG H1 H1 H 0 1 N N N -27.736 -15.777 5.400 -2.171 4.787 0.151 H1 8DG 41 8DG "H2'1" 1H2* H 0 0 N N N -25.472 -16.824 5.221 -3.751 3.193 -1.068 "H2'1" 8DG 42 8DG "H2'2" 2H2* H 0 0 N N N -25.512 -18.162 4.275 -4.142 2.704 0.610 "H2'2" 8DG 43 8DG "H1'" H1* H 0 1 N N N -26.034 -18.050 7.325 -3.703 0.993 -1.712 "H1'" 8DG 44 8DG HN7 HN7 H 0 1 N N N -21.766 -20.666 5.782 -5.527 -0.924 2.800 HN7 8DG 45 8DG HN1 HN1 H 0 1 N N N -21.503 -18.961 10.589 -8.652 -2.213 -0.838 HN1 8DG 46 8DG HN21 1HN2 H 0 0 N N N -22.956 -17.205 11.296 -7.272 -0.779 -3.722 HN21 8DG 47 8DG HN22 2HN2 H 0 0 N N N -24.593 -17.482 11.124 -8.536 -1.708 -3.122 HN22 8DG 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8DG PG O1G DOUB N N 1 8DG PG O2G SING N N 2 8DG PG O3G SING N N 3 8DG PG O3B SING N N 4 8DG O2G HOG2 SING N N 5 8DG O3G H3G SING N N 6 8DG O3B PB SING N N 7 8DG PB O1B DOUB N N 8 8DG PB O2B SING N N 9 8DG PB O3A SING N N 10 8DG O2B HOB2 SING N N 11 8DG O3A PA SING N N 12 8DG PA O1A DOUB N N 13 8DG PA O2A SING N N 14 8DG PA "O5'" SING N N 15 8DG O2A HOA2 SING N N 16 8DG "O5'" "C5'" SING N N 17 8DG "C5'" "C4'" SING N N 18 8DG "C5'" "H5'1" SING N N 19 8DG "C5'" "H5'2" SING N N 20 8DG "C4'" "O4'" SING N N 21 8DG "C4'" "C3'" SING N N 22 8DG "C4'" "H4'" SING N N 23 8DG "O4'" "C1'" SING N N 24 8DG "C3'" "O3'" SING N N 25 8DG "C3'" "C2'" SING N N 26 8DG "C3'" "H3'" SING N N 27 8DG "O3'" H1 SING N N 28 8DG "C2'" "C1'" SING N N 29 8DG "C2'" "H2'1" SING N N 30 8DG "C2'" "H2'2" SING N N 31 8DG "C1'" N9 SING N N 32 8DG "C1'" "H1'" SING N N 33 8DG N9 C8 SING N N 34 8DG N9 C4 SING N N 35 8DG C8 N7 SING N N 36 8DG C8 O8 DOUB N N 37 8DG N7 C5 SING N N 38 8DG N7 HN7 SING N N 39 8DG C5 C6 SING N N 40 8DG C5 C4 DOUB N N 41 8DG C6 O6 DOUB N N 42 8DG C6 N1 SING N N 43 8DG N1 C2 SING N N 44 8DG N1 HN1 SING N N 45 8DG C2 N2 SING N N 46 8DG C2 N3 DOUB N N 47 8DG N2 HN21 SING N N 48 8DG N2 HN22 SING N N 49 8DG N3 C4 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8DG SMILES ACDLabs 10.04 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(N2C(=O)NC1=C2N=C(N)NC1=O)CC3O" 8DG SMILES_CANONICAL CACTVS 3.341 "NC1=NC2=C(NC(=O)N2[C@H]3C[C@H](O)[C@@H](CO[P@](O)(=O)O[P@](O)(=O)O[P](O)(O)=O)O3)C(=O)N1" 8DG SMILES CACTVS 3.341 "NC1=NC2=C(NC(=O)N2[CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3)C(=O)N1" 8DG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H](O[C@H]1N2C3=C(C(=O)NC(=N3)N)NC2=O)CO[P@@](=O)(O)O[P@@](=O)(O)OP(=O)(O)O)O" 8DG SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(OC1N2C3=C(C(=O)NC(=N3)N)NC2=O)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" 8DG InChI InChI 1.03 "InChI=1S/C10H16N5O14P3/c11-9-13-7-6(8(17)14-9)12-10(18)15(7)5-1-3(16)4(27-5)2-26-31(22,23)29-32(24,25)28-30(19,20)21/h3-5,16H,1-2H2,(H,12,18)(H,22,23)(H,24,25)(H2,19,20,21)(H3,11,13,14,17)/t3-,4+,5+/m0/s1" 8DG InChIKey InChI 1.03 BUZOGVVQWCXXDP-VPENINKCSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 8DG "SYSTEMATIC NAME" ACDLabs 10.04 ;2'-deoxy-8-oxoguanosine 5'-(tetrahydrogen triphosphate) ; 8DG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2R,3S,5R)-5-(2-amino-6,8-dioxo-1,7-dihydropurin-9-yl)-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8DG "Create component" 2004-12-16 RCSB 8DG "Modify descriptor" 2011-06-04 RCSB #