data_8DR
#
_chem_comp.id 8DR
_chem_comp.name "(S)-2-(3-(benzo[c][1,2,5]thiadiazole-4-sulfonamido)thiophene-2-carboxamido)-5-guanidinopentanoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H19 N7 O5 S3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "(2S)-2-[[3-(2,1,3-benzothiadiazol-4-ylsulfonylamino)thiophen-2-yl]carbonylamino]-5-carbamimidamido-pentanoic acid"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-07-14
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 497.572
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 8DR
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3I97
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8DR C C C 0 1 N N N -6.579 -10.993 -13.299 -2.938 3.673 -0.541 C 8DR 1
8DR N N N 0 1 N N N -5.365 -9.681 -15.017 -1.786 1.745 0.379 N 8DR 2
8DR O O O 0 1 N N N -7.342 -12.009 -13.368 -2.300 4.312 0.263 O 8DR 3
8DR CA CA C 0 1 N N S -5.367 -10.989 -14.303 -2.773 2.177 -0.614 CA 8DR 4
8DR CB CB C 0 1 N N N -3.997 -11.285 -13.609 -4.115 1.502 -0.328 CB 8DR 5
8DR CD CD C 0 1 N N N -3.022 -13.704 -13.683 -5.320 -0.685 -0.238 CD 8DR 6
8DR NE NE N 0 1 N N N -2.321 -14.488 -12.624 -5.189 -2.132 -0.426 NE 8DR 7
8DR CG CG C 0 1 N N N -3.999 -12.692 -13.001 -3.978 -0.010 -0.524 CG 8DR 8
8DR CZ CZ C 0 1 N N N -2.450 -15.819 -12.461 -6.273 -2.953 -0.224 CZ 8DR 9
8DR OAD OAD O 0 1 N N N -5.033 -10.758 -16.985 -0.105 2.161 -1.014 OAD 8DR 10
8DR OAE OAE O 0 1 N N N -5.742 -5.502 -13.120 4.199 1.584 -2.069 OAE 8DR 11
8DR OAF OAF O 0 1 N N N -6.235 -4.473 -15.266 4.704 0.900 0.281 OAF 8DR 12
8DR CAH CAH C 0 1 Y N N -2.095 -3.404 -15.565 3.106 -2.438 -2.842 CAH 8DR 13
8DR CAI CAI C 0 1 Y N N -5.219 -6.514 -18.625 1.766 0.544 3.006 CAI 8DR 14
8DR CAJ CAJ C 0 1 Y N N -3.420 -3.839 -15.520 3.457 -1.132 -2.502 CAJ 8DR 15
8DR CAK CAK C 0 1 Y N N -5.372 -6.114 -17.360 2.531 0.885 1.966 CAK 8DR 16
8DR CAL CAL C 0 1 Y N N -1.151 -4.022 -14.746 2.670 -3.321 -1.912 CAL 8DR 17
8DR NAP NAP N 0 1 Y N N -0.756 -5.758 -13.050 2.171 -3.592 0.517 NAP 8DR 18
8DR NAQ NAQ N 0 1 Y N N -3.150 -6.481 -13.034 2.773 -1.357 1.100 NAQ 8DR 19
8DR NAT NAT N 0 1 N N N -5.520 -6.945 -15.182 2.466 1.748 -0.320 NAT 8DR 20
8DR SAU SAU S 0 1 Y N N -1.781 -6.852 -12.332 2.249 -2.663 1.763 SAU 8DR 21
8DR SAV SAV S 0 1 Y N N -5.078 -8.212 -18.736 0.112 0.776 2.658 SAV 8DR 22
8DR CAY CAY C 0 1 N N N -5.202 -9.703 -16.341 -0.472 1.775 0.081 CAY 8DR 23
8DR CAZ CAZ C 0 1 Y N N -5.377 -7.123 -16.472 1.843 1.346 0.859 CAZ 8DR 24
8DR CBA CBA C 0 1 Y N N -3.771 -4.877 -14.677 3.379 -0.686 -1.225 CBA 8DR 25
8DR CBB CBB C 0 1 Y N N -5.225 -8.355 -17.061 0.480 1.357 1.040 CBB 8DR 26
8DR CBC CBC C 0 1 Y N N -1.522 -5.064 -13.889 2.563 -2.924 -0.555 CBC 8DR 27
8DR CBD CBD C 0 1 Y N N -2.865 -5.483 -13.868 2.931 -1.556 -0.199 CBD 8DR 28
8DR SBF SBF S 0 1 N N N -5.367 -5.454 -14.563 3.834 0.973 -0.840 SBF 8DR 29
8DR NH1 NH1 N 0 1 N N N -1.808 -16.446 -11.494 -6.150 -4.311 -0.400 NH1 8DR 30
8DR NH2 NH2 N 0 1 N N N -3.210 -16.560 -13.242 -7.418 -2.444 0.136 NH2 8DR 31
8DR OXT OXT O 0 1 N N N -6.723 -9.991 -12.532 -3.796 4.295 -1.364 OXT 8DR 32
8DR HN HN H 0 1 N N N -5.481 -8.820 -14.523 -2.079 1.437 1.251 HN 8DR 33
8DR HA HA H 0 1 N N N -5.495 -11.810 -15.024 -2.431 1.898 -1.611 HA 8DR 34
8DR HB HB H 0 1 N N N -3.192 -11.215 -14.355 -4.414 1.708 0.700 HB 8DR 35
8DR HBA HBA H 0 1 N N N -3.830 -10.547 -12.811 -4.871 1.890 -1.011 HBA 8DR 36
8DR HD HD H 0 1 N N N -3.590 -14.386 -14.333 -6.076 -0.297 -0.921 HD 8DR 37
8DR HDA HDA H 0 1 N N N -2.284 -13.156 -14.287 -5.619 -0.478 0.790 HDA 8DR 38
8DR HNE HNE H 0 1 N N N -1.718 -13.995 -11.997 -4.337 -2.511 -0.694 HNE 8DR 39
8DR HG HG H 0 1 N N N -3.703 -12.601 -11.945 -3.679 -0.216 -1.552 HG 8DR 40
8DR HGA HGA H 0 1 N N N -5.018 -13.096 -13.095 -3.223 -0.398 0.159 HGA 8DR 41
8DR HAH HAH H 0 1 N N N -1.805 -2.600 -16.225 3.179 -2.751 -3.873 HAH 8DR 42
8DR HAI HAI H 0 1 N N N -5.188 -5.846 -19.473 2.145 0.167 3.944 HAI 8DR 43
8DR HAJ HAJ H 0 1 N N N -4.168 -3.367 -16.141 3.800 -0.460 -3.275 HAJ 8DR 44
8DR HAK HAK H 0 1 N N N -5.481 -5.077 -17.077 3.608 0.806 1.989 HAK 8DR 45
8DR HAL HAL H 0 1 N N N -0.123 -3.693 -14.773 2.405 -4.327 -2.203 HAL 8DR 46
8DR HNAT HNAT H 0 0 N N N -6.446 -7.248 -14.958 2.098 2.481 -0.837 HNAT 8DR 47
8DR HNH1 HNH1 H 0 0 N N N -1.912 -17.434 -11.384 -5.298 -4.690 -0.668 HNH1 8DR 48
8DR HNHA HNHA H 0 0 N N N -1.217 -15.933 -10.871 -6.915 -4.890 -0.258 HNHA 8DR 49
8DR HNH2 HNH2 H 0 0 N N N -3.189 -17.525 -12.979 -8.183 -3.023 0.279 HNH2 8DR 50
8DR HOXT HOXT H 0 0 N N N -7.502 -10.108 -12.001 -3.870 5.255 -1.277 HOXT 8DR 51
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8DR CA C SING N N 1
8DR O C DOUB N N 2
8DR C OXT SING N N 3
8DR CAY N SING N N 4
8DR N CA SING N N 5
8DR N HN SING N N 6
8DR CA CB SING N N 7
8DR CA HA SING N N 8
8DR CB CG SING N N 9
8DR CB HB SING N N 10
8DR CB HBA SING N N 11
8DR CD CG SING N N 12
8DR CD NE SING N N 13
8DR CD HD SING N N 14
8DR CD HDA SING N N 15
8DR NE CZ SING N N 16
8DR NE HNE SING N N 17
8DR CG HG SING N N 18
8DR CG HGA SING N N 19
8DR NH2 CZ DOUB N N 20
8DR CZ NH1 SING N N 21
8DR OAD CAY DOUB N N 22
8DR SBF OAE DOUB N N 23
8DR OAF SBF DOUB N N 24
8DR CAH CAJ SING Y N 25
8DR CAH CAL DOUB Y N 26
8DR CAH HAH SING N N 27
8DR SAV CAI SING Y N 28
8DR CAI CAK DOUB Y N 29
8DR CAI HAI SING N N 30
8DR CAJ CBA DOUB Y N 31
8DR CAJ HAJ SING N N 32
8DR CAK CAZ SING Y N 33
8DR CAK HAK SING N N 34
8DR CAL CBC SING Y N 35
8DR CAL HAL SING N N 36
8DR CBC NAP DOUB Y N 37
8DR NAP SAU SING Y N 38
8DR CBD NAQ DOUB Y N 39
8DR NAQ SAU SING Y N 40
8DR CAZ NAT SING N N 41
8DR NAT SBF SING N N 42
8DR NAT HNAT SING N N 43
8DR SAV CBB SING Y N 44
8DR CBB CAY SING N N 45
8DR CBB CAZ DOUB Y N 46
8DR CBA SBF SING N N 47
8DR CBA CBD SING Y N 48
8DR CBC CBD SING Y N 49
8DR NH1 HNH1 SING N N 50
8DR NH1 HNHA SING N N 51
8DR NH2 HNH2 SING N N 52
8DR OXT HOXT SING N N 53
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8DR SMILES ACDLabs 11.02 "O=C(O)C(NC(=O)c1sccc1NS(=O)(=O)c2cccc3nsnc23)CCCNC(=[N@H])N"
8DR SMILES_CANONICAL CACTVS 3.352 "NC(=N)NCCC[C@H](NC(=O)c1sccc1N[S](=O)(=O)c2cccc3nsnc23)C(O)=O"
8DR SMILES CACTVS 3.352 "NC(=N)NCCC[CH](NC(=O)c1sccc1N[S](=O)(=O)c2cccc3nsnc23)C(O)=O"
8DR SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "[H]/N=C(/N)\NCCC[C@@H](C(=O)O)NC(=O)c1c(ccs1)NS(=O)(=O)c2cccc3c2nsn3"
8DR SMILES "OpenEye OEToolkits" 1.7.0 "c1cc2c(c(c1)S(=O)(=O)Nc3ccsc3C(=O)NC(CCCNC(=N)N)C(=O)O)nsn2"
8DR InChI InChI 1.03 "InChI=1S/C17H19N7O5S3/c18-17(19)20-7-2-4-11(16(26)27)21-15(25)14-10(6-8-30-14)24-32(28,29)12-5-1-3-9-13(12)23-31-22-9/h1,3,5-6,8,11,24H,2,4,7H2,(H,21,25)(H,26,27)(H4,18,19,20)/t11-/m0/s1"
8DR InChIKey InChI 1.03 ZWWMEDURALZMEV-NSHDSACASA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
8DR "SYSTEMATIC NAME" ACDLabs 11.02 "N~2~-({3-[(2,1,3-benzothiadiazol-4-ylsulfonyl)amino]thiophen-2-yl}carbonyl)-L-arginine"
8DR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2S)-2-[[3-(2,1,3-benzothiadiazol-4-ylsulfonylamino)thiophen-2-yl]carbonylamino]-5-carbamimidamido-pentanoic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8DR "Create component" 2009-07-14 RCSB
8DR "Modify aromatic_flag" 2011-06-04 RCSB
8DR "Modify descriptor" 2011-06-04 RCSB
8DR "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 8DR
_pdbx_chem_comp_synonyms.name "(2S)-2-[[3-(2,1,3-benzothiadiazol-4-ylsulfonylamino)thiophen-2-yl]carbonylamino]-5-carbamimidamido-pentanoic acid"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##