data_8E8 # _chem_comp.id 8E8 _chem_comp.name "1-[(3~{R})-3-[4-azanyl-3-(4-phenoxyphenyl)pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl]propan-1-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H26 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Ibrutinib (bound form)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-10-20 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 442.513 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8E8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5P9J _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8E8 N1 N1 N 0 1 Y N N 17.996 4.906 0.251 0.818 4.478 -0.228 N1 8E8 1 8E8 C2 C1 C 0 1 Y N N 19.029 5.210 -0.502 2.082 4.239 -0.531 C2 8E8 2 8E8 N3 N2 N 0 1 Y N N 20.165 5.774 -0.209 2.568 3.022 -0.637 N3 8E8 3 8E8 C4 C2 C 0 1 Y N N 20.287 6.087 1.106 1.789 1.958 -0.438 C4 8E8 4 8E8 C5 C3 C 0 1 Y N N 19.244 5.770 2.045 0.436 2.165 -0.112 C5 8E8 5 8E8 C6 C4 C 0 1 Y N N 18.035 5.202 1.583 -0.036 3.484 -0.011 C6 8E8 6 8E8 CAA C5 C 0 1 N N N 24.636 11.914 -0.796 8.328 -2.156 1.464 CAA 8E8 7 8E8 NAB N3 N 0 1 N N N 16.993 4.962 2.344 -1.356 3.741 0.307 NAB 8E8 8 8E8 OAC O1 O 0 1 N N N 22.896 9.271 -1.719 6.002 -0.933 1.826 OAC 8E8 9 8E8 CAD C6 C 0 1 N N N 24.926 10.401 -1.225 7.224 -2.393 0.431 CAD 8E8 10 8E8 CAE C7 C 0 1 Y N N 14.681 8.437 10.029 -7.728 -2.524 -1.281 CAE 8E8 11 8E8 CAF C8 C 0 1 Y N N 14.539 8.013 8.709 -8.335 -1.954 -0.178 CAF 8E8 12 8E8 CAG C9 C 0 1 Y N N 15.731 7.994 10.795 -6.375 -2.342 -1.500 CAG 8E8 13 8E8 CAI C10 C 0 1 Y N N 15.458 7.201 8.143 -7.592 -1.199 0.708 CAI 8E8 14 8E8 CAJ C11 C 0 1 Y N N 16.634 7.082 10.226 -5.628 -1.583 -0.620 CAJ 8E8 15 8E8 CAK C12 C 0 1 Y N N 18.227 4.860 6.454 -3.914 0.975 0.102 CAK 8E8 16 8E8 CAL C13 C 0 1 Y N N 18.403 7.301 6.655 -3.181 -0.716 1.650 CAL 8E8 17 8E8 CAM C14 C 0 1 Y N N 18.766 4.955 5.197 -2.602 1.251 -0.222 CAM 8E8 18 8E8 CAN C15 C 0 1 Y N N 19.004 7.377 5.430 -1.868 -0.441 1.334 CAN 8E8 19 8E8 CAO C16 C 0 1 N N N 24.944 7.933 1.767 4.428 -1.607 -2.343 CAO 8E8 20 8E8 CAP C17 C 0 1 N N N 23.791 6.994 2.161 3.092 -0.942 -2.007 CAP 8E8 21 8E8 CAQ C18 C 0 1 N N N 24.375 9.395 1.601 4.866 -2.487 -1.167 CAQ 8E8 22 8E8 CAR C19 C 0 1 N N N 22.234 8.540 0.826 3.684 -0.913 0.420 CAR 8E8 23 8E8 NAU N4 N 0 1 Y N N 20.956 6.785 3.152 0.787 -0.044 -0.173 NAU 8E8 24 8E8 OAV O2 O 0 1 N N N 17.473 5.899 8.446 -5.500 -0.272 1.361 OAV 8E8 25 8E8 CAW C20 C 0 1 N N N 23.702 9.561 -0.811 5.995 -1.612 0.821 CAW 8E8 26 8E8 CAY C21 C 0 1 Y N N 16.539 6.777 8.917 -6.234 -1.014 0.491 CAY 8E8 27 8E8 CAZ C22 C 0 1 Y N N 18.005 6.032 7.186 -4.207 -0.006 1.040 CAZ 8E8 28 8E8 CBA C23 C 0 1 Y N N 19.109 6.221 4.675 -1.570 0.544 0.393 CBA 8E8 29 8E8 CBB C24 C 0 1 Y N N 19.757 6.277 3.360 -0.159 0.838 0.047 CBB 8E8 30 8E8 CBE C25 C 0 1 N N R 22.532 7.127 1.261 3.259 -0.051 -0.773 CBE 8E8 31 8E8 NBF N5 N 0 1 Y N N 21.240 6.660 1.801 1.987 0.610 -0.471 NBF 8E8 32 8E8 NBG N6 N 0 1 N N N 23.477 9.237 0.497 4.889 -1.668 0.053 NBG 8E8 33 8E8 H1 H1 H 0 1 N N N 18.916 4.947 -1.543 2.742 5.077 -0.700 H1 8E8 34 8E8 H2 H2 H 0 1 N N N 25.492 12.546 -1.077 8.568 -1.094 1.501 H2 8E8 35 8E8 H3 H3 H 0 1 N N N 23.731 12.273 -1.308 7.984 -2.485 2.445 H3 8E8 36 8E8 H4 H4 H 0 1 N Y N 24.485 11.964 0.292 9.216 -2.720 1.182 H4 8E8 37 8E8 H5 H5 H 0 1 N N N 16.261 4.564 1.791 -1.713 4.637 0.208 H5 8E8 38 8E8 H6 H6 H 0 1 N N N 17.250 4.322 3.068 -1.926 3.024 0.629 H6 8E8 39 8E8 H7 H7 H 0 1 N N N 25.826 10.031 -0.713 7.567 -2.064 -0.550 H7 8E8 40 8E8 H8 H8 H 0 1 N N N 25.073 10.340 -2.314 6.983 -3.455 0.394 H8 8E8 41 8E8 H9 H9 H 0 1 N N N 13.959 9.120 10.453 -8.311 -3.117 -1.971 H9 8E8 42 8E8 H10 H10 H 0 1 N N N 13.685 8.337 8.133 -9.392 -2.098 -0.009 H10 8E8 43 8E8 H11 H11 H 0 1 N N N 15.859 8.339 11.810 -5.902 -2.792 -2.361 H11 8E8 44 8E8 H12 H12 H 0 1 N N N 15.358 6.887 7.114 -8.067 -0.753 1.570 H12 8E8 45 8E8 H13 H13 H 0 1 N N N 17.401 6.627 10.835 -4.571 -1.441 -0.792 H13 8E8 46 8E8 H14 H14 H 0 1 N N N 17.978 3.896 6.873 -4.713 1.526 -0.371 H14 8E8 47 8E8 H15 H15 H 0 1 N N N 18.228 8.201 7.225 -3.413 -1.478 2.379 H15 8E8 48 8E8 H16 H16 H 0 1 N N N 18.928 4.064 4.608 -2.375 2.014 -0.952 H16 8E8 49 8E8 H17 H17 H 0 1 N N N 19.388 8.316 5.060 -1.070 -0.993 1.810 H17 8E8 50 8E8 H18 H18 H 0 1 N N N 25.385 7.598 0.817 4.314 -2.223 -3.235 H18 8E8 51 8E8 H19 H19 H 0 1 N N N 25.714 7.923 2.553 5.182 -0.840 -2.524 H19 8E8 52 8E8 H20 H20 H 0 1 N N N 23.500 7.219 3.198 2.766 -0.334 -2.851 H20 8E8 53 8E8 H21 H21 H 0 1 N N N 24.153 5.957 2.099 2.345 -1.709 -1.802 H21 8E8 54 8E8 H22 H22 H 0 1 N N N 25.176 10.112 1.366 4.160 -3.308 -1.043 H22 8E8 55 8E8 H23 H23 H 0 1 N N N 23.843 9.723 2.506 5.861 -2.887 -1.361 H23 8E8 56 8E8 H24 H24 H 0 1 N N N 21.724 9.072 1.642 3.900 -0.273 1.275 H24 8E8 57 8E8 H25 H25 H 0 1 N N N 21.583 8.518 -0.061 2.880 -1.604 0.675 H25 8E8 58 8E8 H26 H26 H 0 1 N N N 22.737 6.546 0.350 4.023 0.701 -0.968 H26 8E8 59 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8E8 OAC CAW DOUB N N 1 8E8 CAD CAW SING N N 2 8E8 CAD CAA SING N N 3 8E8 CAW NBG SING N N 4 8E8 C2 N3 DOUB Y N 5 8E8 C2 N1 SING Y N 6 8E8 N3 C4 SING Y N 7 8E8 N1 C6 DOUB Y N 8 8E8 NBG CAR SING N N 9 8E8 NBG CAQ SING N N 10 8E8 CAR CBE SING N N 11 8E8 C4 NBF SING Y N 12 8E8 C4 C5 DOUB Y N 13 8E8 CBE NBF SING N N 14 8E8 CBE CAP SING N N 15 8E8 C6 C5 SING Y N 16 8E8 C6 NAB SING N N 17 8E8 CAQ CAO SING N N 18 8E8 CAO CAP SING N N 19 8E8 NBF NAU SING Y N 20 8E8 C5 CBB SING Y N 21 8E8 NAU CBB DOUB Y N 22 8E8 CBB CBA SING N N 23 8E8 CBA CAM DOUB Y N 24 8E8 CBA CAN SING Y N 25 8E8 CAM CAK SING Y N 26 8E8 CAN CAL DOUB Y N 27 8E8 CAK CAZ DOUB Y N 28 8E8 CAL CAZ SING Y N 29 8E8 CAZ OAV SING N N 30 8E8 CAI CAF DOUB Y N 31 8E8 CAI CAY SING Y N 32 8E8 OAV CAY SING N N 33 8E8 CAF CAE SING Y N 34 8E8 CAY CAJ DOUB Y N 35 8E8 CAE CAG DOUB Y N 36 8E8 CAJ CAG SING Y N 37 8E8 C2 H1 SING N N 38 8E8 CAA H2 SING N N 39 8E8 CAA H3 SING N N 40 8E8 CAA H4 SING N N 41 8E8 NAB H5 SING N N 42 8E8 NAB H6 SING N N 43 8E8 CAD H7 SING N N 44 8E8 CAD H8 SING N N 45 8E8 CAE H9 SING N N 46 8E8 CAF H10 SING N N 47 8E8 CAG H11 SING N N 48 8E8 CAI H12 SING N N 49 8E8 CAJ H13 SING N N 50 8E8 CAK H14 SING N N 51 8E8 CAL H15 SING N N 52 8E8 CAM H16 SING N N 53 8E8 CAN H17 SING N N 54 8E8 CAO H18 SING N N 55 8E8 CAO H19 SING N N 56 8E8 CAP H20 SING N N 57 8E8 CAP H21 SING N N 58 8E8 CAQ H22 SING N N 59 8E8 CAQ H23 SING N N 60 8E8 CAR H24 SING N N 61 8E8 CAR H25 SING N N 62 8E8 CBE H26 SING N N 63 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8E8 InChI InChI 1.03 "InChI=1S/C25H26N6O2/c1-2-21(32)30-14-6-7-18(15-30)31-25-22(24(26)27-16-28-25)23(29-31)17-10-12-20(13-11-17)33-19-8-4-3-5-9-19/h3-5,8-13,16,18H,2,6-7,14-15H2,1H3,(H2,26,27,28)/t18-/m1/s1" 8E8 InChIKey InChI 1.03 ROGRQCNRPWIQJN-GOSISDBHSA-N 8E8 SMILES_CANONICAL CACTVS 3.385 "CCC(=O)N1CCC[C@H](C1)n2nc(c3ccc(Oc4ccccc4)cc3)c5c(N)ncnc25" 8E8 SMILES CACTVS 3.385 "CCC(=O)N1CCC[CH](C1)n2nc(c3ccc(Oc4ccccc4)cc3)c5c(N)ncnc25" 8E8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCC(=O)N1CCC[C@H](C1)n2c3c(c(n2)c4ccc(cc4)Oc5ccccc5)c(ncn3)N" 8E8 SMILES "OpenEye OEToolkits" 2.0.6 "CCC(=O)N1CCCC(C1)n2c3c(c(n2)c4ccc(cc4)Oc5ccccc5)c(ncn3)N" # _pdbx_chem_comp_identifier.comp_id 8E8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "1-[(3~{R})-3-[4-azanyl-3-(4-phenoxyphenyl)pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl]propan-1-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8E8 "Create component" 2016-10-20 RCSB 8E8 "Initial release" 2017-05-24 RCSB 8E8 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 8E8 _pdbx_chem_comp_synonyms.name "Ibrutinib (bound form)" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##