data_8EL # _chem_comp.id 8EL _chem_comp.name "2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2H-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H20 N4 O7 P2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-06-20 _chem_comp.pdbx_modified_date 2018-04-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 426.322 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8EL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5XSA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8EL "C4'" C1 C 0 1 Y N N -12.882 33.124 25.982 6.258 0.407 0.116 "C4'" 8EL 1 8EL "C5'" C2 C 0 1 Y N N -13.012 33.254 27.415 5.251 -0.300 0.777 "C5'" 8EL 2 8EL "C6'" C3 C 0 1 Y N N -11.845 33.355 28.130 5.248 -1.677 0.683 "C6'" 8EL 3 8EL "N1'" N1 N 0 1 Y N N -10.626 33.328 27.469 6.193 -2.280 -0.026 "N1'" 8EL 4 8EL "N3'" N2 N 0 1 Y N N -11.662 33.131 25.360 7.171 -0.269 -0.576 "N3'" 8EL 5 8EL "C2'" C4 C 0 1 Y N N -10.571 33.184 26.102 7.129 -1.584 -0.638 "C2'" 8EL 6 8EL CM4 C5 C 0 1 N N N -13.966 35.866 29.538 1.820 -1.164 1.014 CM4 8EL 7 8EL CM2 C6 C 0 1 N N N -9.263 33.110 25.499 8.183 -2.313 -1.432 CM2 8EL 8 8EL C7 C7 C 0 1 N N N -15.698 38.912 27.235 -1.325 0.466 0.066 C7 8EL 9 8EL C6 C8 C 0 1 N N N -15.965 37.974 28.377 -0.188 -0.018 -0.837 C6 8EL 10 8EL C2 C9 C 0 1 N N N -16.452 34.286 27.219 3.233 2.219 -0.006 C2 8EL 11 8EL "C7'" C10 C 0 1 N N N -14.280 33.248 28.152 4.195 0.423 1.573 "C7'" 8EL 12 8EL C4 C11 C 0 1 N N N -14.978 35.607 28.449 2.015 0.190 0.382 C4 8EL 13 8EL C5 C12 C 0 1 N N N -15.810 36.553 27.954 1.096 0.660 -0.435 C5 8EL 14 8EL "N4'" N3 N 0 1 N N N -13.946 32.988 25.187 6.302 1.791 0.175 "N4'" 8EL 15 8EL N3 N4 N 0 1 N N N -15.123 34.410 27.820 3.152 0.913 0.669 N3 8EL 16 8EL O1B O1 O 0 1 N N N -20.031 40.827 25.750 -7.077 0.891 -0.555 O1B 8EL 17 8EL O1A O2 O 0 1 N N N -15.207 40.947 25.326 -4.236 1.549 0.410 O1A 8EL 18 8EL O2B O3 O 0 1 N N N -19.165 41.583 27.883 -7.361 -1.105 0.965 O2B 8EL 19 8EL O3B O4 O 0 1 N N N -18.893 43.086 25.973 -7.300 -1.372 -1.650 O3B 8EL 20 8EL O2A O5 O 0 1 N N N -16.017 42.595 27.019 -3.863 -0.419 1.945 O2A 8EL 21 8EL O7 O6 O 0 1 N N N -15.931 40.255 27.682 -2.543 -0.176 -0.315 O7 8EL 22 8EL O3A O7 O 0 1 N N N -17.611 40.948 26.017 -5.121 -0.691 -0.347 O3A 8EL 23 8EL PB P1 P 0 1 N N N -18.986 41.658 26.284 -6.723 -0.538 -0.400 PB 8EL 24 8EL PA P2 P 0 1 N N N -16.108 41.252 26.456 -3.947 0.097 0.423 PA 8EL 25 8EL S1 S1 S 0 1 N N N -16.842 35.955 26.677 1.674 2.253 -0.969 S1 8EL 26 8EL H1 H1 H 0 1 N N N -11.876 33.455 29.205 4.485 -2.257 1.181 H1 8EL 27 8EL H2 H2 H 0 1 N N N -14.052 36.908 29.879 0.835 -1.549 0.752 H2 8EL 28 8EL H3 H3 H 0 1 N N N -14.155 35.187 30.383 2.586 -1.849 0.650 H3 8EL 29 8EL H4 H4 H 0 1 N N N -12.953 35.691 29.146 1.899 -1.074 2.097 H4 8EL 30 8EL H5 H5 H 0 1 N N N -9.367 33.011 24.408 9.028 -2.548 -0.785 H5 8EL 31 8EL H6 H6 H 0 1 N N N -8.700 34.026 25.732 7.763 -3.237 -1.831 H6 8EL 32 8EL H7 H7 H 0 1 N N N -8.725 32.237 25.897 8.519 -1.683 -2.255 H7 8EL 33 8EL H8 H8 H 0 1 N N N -16.372 38.678 26.398 -1.094 0.222 1.103 H8 8EL 34 8EL H9 H9 H 0 1 N N N -14.654 38.807 26.906 -1.436 1.546 -0.037 H9 8EL 35 8EL H10 H10 H 0 1 N N N -15.254 38.186 29.189 -0.077 -1.098 -0.734 H10 8EL 36 8EL H11 H11 H 0 1 N N N -16.992 38.131 28.738 -0.419 0.226 -1.874 H11 8EL 37 8EL H12 H12 H 0 1 N N N -17.185 33.934 27.960 3.257 3.031 0.720 H12 8EL 38 8EL H13 H13 H 0 1 N N N -16.432 33.592 26.365 4.100 2.263 -0.665 H13 8EL 39 8EL H14 H14 H 0 1 N N N -14.830 32.329 27.903 3.756 -0.262 2.299 H14 8EL 40 8EL H15 H15 H 0 1 N N N -14.063 33.264 29.230 4.648 1.265 2.096 H15 8EL 41 8EL H16 H16 H 0 1 N N N -13.645 32.912 24.236 5.693 2.271 0.758 H16 8EL 42 8EL H17 H17 H 0 1 N N N -14.450 32.163 25.443 6.942 2.279 -0.366 H17 8EL 43 8EL H18 H18 H 0 1 N N N -19.901 41.021 28.094 -7.169 -2.037 1.131 H18 8EL 44 8EL H19 H19 H 0 1 N N N -19.605 43.332 25.394 -8.262 -1.326 -1.744 H19 8EL 45 8EL H20 H20 H 0 1 N N N -15.359 43.092 26.548 -3.675 -1.364 2.030 H20 8EL 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8EL "N4'" "C4'" SING N N 1 8EL O1A PA DOUB N N 2 8EL "N3'" "C4'" DOUB Y N 3 8EL "N3'" "C2'" SING Y N 4 8EL CM2 "C2'" SING N N 5 8EL O1B PB DOUB N N 6 8EL O3B PB SING N N 7 8EL "C4'" "C5'" SING Y N 8 8EL O3A PB SING N N 9 8EL O3A PA SING N N 10 8EL "C2'" "N1'" DOUB Y N 11 8EL PB O2B SING N N 12 8EL PA O2A SING N N 13 8EL PA O7 SING N N 14 8EL S1 C2 SING N N 15 8EL S1 C5 SING N N 16 8EL C2 N3 SING N N 17 8EL C7 O7 SING N N 18 8EL C7 C6 SING N N 19 8EL "C5'" "C6'" DOUB Y N 20 8EL "C5'" "C7'" SING N N 21 8EL "N1'" "C6'" SING Y N 22 8EL N3 "C7'" SING N N 23 8EL N3 C4 SING N N 24 8EL C5 C6 SING N N 25 8EL C5 C4 DOUB N N 26 8EL C4 CM4 SING N N 27 8EL "C6'" H1 SING N N 28 8EL CM4 H2 SING N N 29 8EL CM4 H3 SING N N 30 8EL CM4 H4 SING N N 31 8EL CM2 H5 SING N N 32 8EL CM2 H6 SING N N 33 8EL CM2 H7 SING N N 34 8EL C7 H8 SING N N 35 8EL C7 H9 SING N N 36 8EL C6 H10 SING N N 37 8EL C6 H11 SING N N 38 8EL C2 H12 SING N N 39 8EL C2 H13 SING N N 40 8EL "C7'" H14 SING N N 41 8EL "C7'" H15 SING N N 42 8EL "N4'" H16 SING N N 43 8EL "N4'" H17 SING N N 44 8EL O2B H18 SING N N 45 8EL O3B H19 SING N N 46 8EL O2A H20 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8EL InChI InChI 1.03 "InChI=1S/C12H20N4O7P2S/c1-8-11(3-4-22-25(20,21)23-24(17,18)19)26-7-16(8)6-10-5-14-9(2)15-12(10)13/h5H,3-4,6-7H2,1-2H3,(H,20,21)(H2,13,14,15)(H2,17,18,19)" 8EL InChIKey InChI 1.03 FCUXBJDJFWOWMD-UHFFFAOYSA-N 8EL SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CN2CSC(=C2C)CCO[P](O)(=O)O[P](O)(O)=O)c(N)n1" 8EL SMILES CACTVS 3.385 "Cc1ncc(CN2CSC(=C2C)CCO[P](O)(=O)O[P](O)(O)=O)c(N)n1" 8EL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1ncc(c(n1)N)CN2CSC(=C2C)CCOP(=O)(O)OP(=O)(O)O" 8EL SMILES "OpenEye OEToolkits" 2.0.6 "Cc1ncc(c(n1)N)CN2CSC(=C2C)CCOP(=O)(O)OP(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 8EL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2~{H}-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8EL "Create component" 2017-06-20 PDBJ 8EL "Initial release" 2018-04-25 RCSB #