data_8FG # _chem_comp.id 8FG _chem_comp.name "N-(5'-PHOSPHO-2'-DEOXYGUANOSIN-8-YL)-2-ACETYLAMINOFLUORENE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C25 H25 N6 O8 P" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-09-15 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 568.475 _chem_comp.one_letter_code G _chem_comp.three_letter_code 8FG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 1X9M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8FG OP3 O3P O 0 1 N Y N 36.862 29.365 18.922 6.807 0.679 0.261 OP3 8FG 1 8FG P P P 0 1 N N N 37.031 30.048 17.570 6.475 2.009 -0.296 P 8FG 2 8FG OP1 O1P O 0 1 N N N 37.996 31.229 17.651 7.298 2.240 -1.661 OP1 8FG 3 8FG OP2 O2P O 0 1 N N N 35.688 30.445 16.967 6.871 3.151 0.768 OP2 8FG 4 8FG "O5'" O5* O 0 1 N N N 37.683 28.898 16.617 4.896 2.085 -0.601 "O5'" 8FG 5 8FG N9 N9 N 0 1 Y N N 35.428 24.966 13.834 0.532 -0.895 -0.270 N9 8FG 6 8FG C4 C4 C 0 1 Y N N 34.313 25.746 14.052 1.248 -1.935 0.265 C4 8FG 7 8FG N3 N3 N 0 1 N N N 34.163 27.169 14.444 2.380 -2.018 0.974 N3 8FG 8 8FG C2 C2 C 0 1 N N N 33.007 27.738 14.606 2.855 -3.180 1.362 C2 8FG 9 8FG N2 N2 N 0 1 N N N 32.968 29.059 14.965 4.021 -3.216 2.087 N2 8FG 10 8FG N1 N1 N 0 1 N N N 31.759 26.968 14.404 2.223 -4.351 1.066 N1 8FG 11 8FG C6 C6 C 0 1 N N N 31.749 25.603 14.031 1.075 -4.346 0.354 C6 8FG 12 8FG O6 O6 O 0 1 N N N 30.677 25.011 13.878 0.502 -5.388 0.084 O6 8FG 13 8FG C5 C5 C 0 1 Y N N 33.149 24.928 13.833 0.553 -3.102 -0.070 C5 8FG 14 8FG N7 N7 N 0 1 Y N N 33.456 23.616 13.466 -0.543 -2.731 -0.779 N7 8FG 15 8FG C8 C8 C 0 1 Y N N 34.864 23.748 13.493 -0.562 -1.429 -0.897 C8 8FG 16 8FG C31 C31 C 0 1 Y N N 37.261 22.592 11.104 -2.839 -0.560 0.471 C31 8FG 17 8FG C32 C32 C 0 1 Y N N 35.946 22.420 11.764 -2.716 -0.336 -0.895 C32 8FG 18 8FG C33 C33 C 0 1 Y N N 34.748 22.096 10.976 -3.759 0.252 -1.599 C33 8FG 19 8FG C34 C34 C 0 1 Y N N 34.847 21.944 9.542 -4.919 0.604 -0.944 C34 8FG 20 8FG C35 C35 C 0 1 Y N N 36.151 22.109 8.862 -5.049 0.383 0.425 C35 8FG 21 8FG C36 C36 C 0 1 Y N N 37.344 22.429 9.648 -3.995 -0.204 1.129 C36 8FG 22 8FG C37 C37 C 0 1 N N N 33.716 21.617 8.545 -6.200 1.242 -1.425 C37 8FG 23 8FG C38 C38 C 0 1 Y N N 34.531 21.617 7.243 -7.084 1.371 -0.210 C38 8FG 24 8FG C39 C39 C 0 1 Y N N 35.966 21.911 7.495 -6.381 0.855 0.877 C39 8FG 25 8FG C40 C40 C 0 1 Y N N 34.071 21.375 5.881 -8.356 1.874 -0.039 C40 8FG 26 8FG C41 C41 C 0 1 Y N N 35.029 21.428 4.795 -8.941 1.868 1.215 C41 8FG 27 8FG C42 C42 C 0 1 Y N N 36.421 21.712 5.035 -8.251 1.359 2.300 C42 8FG 28 8FG C43 C43 C 0 1 Y N N 36.903 21.955 6.367 -6.978 0.854 2.139 C43 8FG 29 8FG N29 N29 N 0 1 N N N 35.787 22.569 13.143 -1.539 -0.699 -1.561 N29 8FG 30 8FG C30 C30 C 0 1 N N N 36.393 21.747 14.161 -1.354 -0.340 -2.847 C30 8FG 31 8FG O44 O44 O 0 1 N N N 36.185 21.975 15.389 -2.149 0.396 -3.391 O44 8FG 32 8FG C45 C45 C 0 1 N N N 37.336 20.534 13.939 -0.159 -0.854 -3.608 C45 8FG 33 8FG "C2'" C2* C 0 1 N N N 37.194 26.656 13.263 0.587 1.048 1.238 "C2'" 8FG 34 8FG "C5'" C5* C 0 1 N N N 36.944 27.702 16.299 4.224 1.757 0.616 "C5'" 8FG 35 8FG "C4'" C4* C 0 1 N N R 37.824 26.724 15.556 2.711 1.810 0.394 "C4'" 8FG 36 8FG "O4'" O4* O 0 1 N N N 37.113 25.484 15.327 2.276 0.709 -0.435 "O4'" 8FG 37 8FG "C1'" C1* C 0 1 N N R 36.822 25.344 13.939 0.873 0.527 -0.183 "C1'" 8FG 38 8FG "C3'" C3* C 0 1 N N S 38.293 27.174 14.175 1.956 1.582 1.728 "C3'" 8FG 39 8FG "O3'" O3* O 0 1 N N N 39.552 26.541 13.898 1.798 2.810 2.442 "O3'" 8FG 40 8FG HOP3 3HOP H 0 0 N N N 36.262 28.630 18.872 ? ? ? HOP3 8FG 41 8FG HOP2 2HOP H 0 0 N N N 35.793 30.871 16.124 6.639 4.000 0.367 HOP2 8FG 42 8FG HN21 1HN2 H 0 0 N N N 33.511 29.600 14.292 4.383 -4.067 2.380 HN21 8FG 43 8FG HN22 2HN2 H 0 0 N N N 32.060 29.506 15.092 4.482 -2.391 2.305 HN22 8FG 44 8FG HN1 HN1 H 0 1 N N N 30.847 27.407 14.530 2.600 -5.193 1.368 HN1 8FG 45 8FG H31 H31 H 0 1 N N N 38.164 22.838 11.688 -2.026 -1.014 1.018 H31 8FG 46 8FG H33 H33 H 0 1 N N N 33.768 21.966 11.464 -3.665 0.427 -2.661 H33 8FG 47 8FG H36 H36 H 0 1 N N N 38.315 22.549 9.138 -4.087 -0.379 2.191 H36 8FG 48 8FG H371 1H37 H 0 0 N N N 32.828 22.291 8.570 -5.994 2.226 -1.846 H371 8FG 49 8FG H372 2H37 H 0 0 N N N 33.125 20.695 8.756 -6.677 0.607 -2.172 H372 8FG 50 8FG H40 H40 H 0 1 N N N 33.010 21.154 5.675 -8.896 2.272 -0.885 H40 8FG 51 8FG H41 H41 H 0 1 N N N 34.691 21.248 3.761 -9.938 2.263 1.346 H41 8FG 52 8FG H42 H42 H 0 1 N N N 37.127 21.744 4.188 -8.711 1.357 3.277 H42 8FG 53 8FG H43 H43 H 0 1 N N N 37.974 22.172 6.521 -6.442 0.457 2.989 H43 8FG 54 8FG H451 1H45 H 0 0 N N N 38.173 20.905 13.302 -0.225 -0.532 -4.648 H451 8FG 55 8FG H452 2H45 H 0 0 N N N 37.805 19.898 14.726 0.753 -0.457 -3.163 H452 8FG 56 8FG H453 3H45 H 0 0 N N N 36.789 19.836 13.263 -0.141 -1.943 -3.565 H453 8FG 57 8FG "H2'" 1H2* H 0 1 N N N 36.346 27.360 13.096 -0.148 1.853 1.209 "H2'" 8FG 58 8FG "H2''" 2H2* H 0 0 N N N 37.472 26.572 12.187 0.242 0.238 1.880 "H2''" 8FG 59 8FG "H5'" 1H5* H 0 1 N N N 36.008 27.929 15.738 4.503 2.473 1.390 "H5'" 8FG 60 8FG "H5''" 2H5* H 0 0 N N N 36.485 27.243 17.206 4.510 0.753 0.931 "H5''" 8FG 61 8FG "H4'" H4* H 0 1 N N N 38.714 26.625 16.220 2.424 2.762 -0.052 "H4'" 8FG 62 8FG "H1'" H1* H 0 1 N N N 37.406 24.549 13.419 0.289 1.092 -0.910 "H1'" 8FG 63 8FG "H3'" H3* H 0 1 N N N 38.450 28.272 14.061 2.465 0.840 2.342 "H3'" 8FG 64 8FG "HO3'" H3T H 0 0 N Y N 40.239 26.865 14.468 1.243 2.617 3.210 "HO3'" 8FG 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8FG OP3 P SING N N 1 8FG OP3 HOP3 SING N N 2 8FG P OP1 DOUB N N 3 8FG P OP2 SING N N 4 8FG P "O5'" SING N N 5 8FG OP2 HOP2 SING N N 6 8FG "O5'" "C5'" SING N N 7 8FG N9 C4 SING Y N 8 8FG N9 C8 SING Y N 9 8FG N9 "C1'" SING N N 10 8FG C4 N3 SING N N 11 8FG C4 C5 DOUB Y N 12 8FG N3 C2 DOUB N N 13 8FG C2 N2 SING N N 14 8FG C2 N1 SING N N 15 8FG N2 HN21 SING N N 16 8FG N2 HN22 SING N N 17 8FG N1 C6 SING N N 18 8FG N1 HN1 SING N N 19 8FG C6 O6 DOUB N N 20 8FG C6 C5 SING N N 21 8FG C5 N7 SING Y N 22 8FG N7 C8 DOUB Y N 23 8FG C8 N29 SING N N 24 8FG C31 C32 DOUB Y N 25 8FG C31 C36 SING Y N 26 8FG C31 H31 SING N N 27 8FG C32 C33 SING Y N 28 8FG C32 N29 SING N N 29 8FG C33 C34 DOUB Y N 30 8FG C33 H33 SING N N 31 8FG C34 C35 SING Y N 32 8FG C34 C37 SING N N 33 8FG C35 C36 DOUB Y N 34 8FG C35 C39 SING Y N 35 8FG C36 H36 SING N N 36 8FG C37 C38 SING N N 37 8FG C37 H371 SING N N 38 8FG C37 H372 SING N N 39 8FG C38 C39 DOUB Y N 40 8FG C38 C40 SING Y N 41 8FG C39 C43 SING Y N 42 8FG C40 C41 DOUB Y N 43 8FG C40 H40 SING N N 44 8FG C41 C42 SING Y N 45 8FG C41 H41 SING N N 46 8FG C42 C43 DOUB Y N 47 8FG C42 H42 SING N N 48 8FG C43 H43 SING N N 49 8FG N29 C30 SING N N 50 8FG C30 O44 DOUB N N 51 8FG C30 C45 SING N N 52 8FG C45 H451 SING N N 53 8FG C45 H452 SING N N 54 8FG C45 H453 SING N N 55 8FG "C2'" "C1'" SING N N 56 8FG "C2'" "C3'" SING N N 57 8FG "C2'" "H2'" SING N N 58 8FG "C2'" "H2''" SING N N 59 8FG "C5'" "C4'" SING N N 60 8FG "C5'" "H5'" SING N N 61 8FG "C5'" "H5''" SING N N 62 8FG "C4'" "O4'" SING N N 63 8FG "C4'" "C3'" SING N N 64 8FG "C4'" "H4'" SING N N 65 8FG "O4'" "C1'" SING N N 66 8FG "C1'" "H1'" SING N N 67 8FG "C3'" "O3'" SING N N 68 8FG "C3'" "H3'" SING N N 69 8FG "O3'" "HO3'" SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8FG SMILES ACDLabs 10.04 "O=C1c2nc(n(c2N=C(N)N1)C3OC(C(O)C3)COP(=O)(O)O)N(c6ccc5c4ccccc4Cc5c6)C(=O)C" 8FG SMILES_CANONICAL CACTVS 3.341 "CC(=O)N(c1ccc2c(Cc3ccccc23)c1)c4nc5C(=O)NC(=Nc5n4[C@H]6C[C@H](O)[C@@H](CO[P](O)(O)=O)O6)N" 8FG SMILES CACTVS 3.341 "CC(=O)N(c1ccc2c(Cc3ccccc23)c1)c4nc5C(=O)NC(=Nc5n4[CH]6C[CH](O)[CH](CO[P](O)(O)=O)O6)N" 8FG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(=O)N(c1ccc-2c(c1)Cc3c2cccc3)c4nc5c(n4[C@H]6C[C@@H]([C@H](O6)COP(=O)(O)O)O)N=C(NC5=O)N" 8FG SMILES "OpenEye OEToolkits" 1.5.0 "CC(=O)N(c1ccc-2c(c1)Cc3c2cccc3)c4nc5c(n4C6CC(C(O6)COP(=O)(O)O)O)N=C(NC5=O)N" 8FG InChI InChI 1.03 "InChI=1S/C25H25N6O8P/c1-12(32)30(15-6-7-17-14(9-15)8-13-4-2-3-5-16(13)17)25-27-21-22(28-24(26)29-23(21)34)31(25)20-10-18(33)19(39-20)11-38-40(35,36)37/h2-7,9,18-20,33H,8,10-11H2,1H3,(H2,35,36,37)(H3,26,28,29,34)/t18-,19+,20+/m0/s1" 8FG InChIKey InChI 1.03 NDOGYHUMWQPHFA-XUVXKRRUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 8FG "SYSTEMATIC NAME" ACDLabs 10.04 ;8-[acetyl(9H-fluoren-2-yl)amino]-2'-deoxyguanosine 5'-(dihydrogen phosphate) ; 8FG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-[2-amino-8-(ethanoyl-(9H-fluoren-2-yl)amino)-6-oxo-1H-purin-9-yl]-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8FG "Create component" 2004-09-15 RCSB 8FG "Modify aromatic_flag" 2011-06-04 RCSB 8FG "Modify descriptor" 2011-06-04 RCSB #