data_8G9 # _chem_comp.id 8G9 _chem_comp.name "(1R,2S,5S)-3-[N-(tert-butylcarbamoyl)-3-methyl-L-valyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H45 N5 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-09-16 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 507.666 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8G9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7S6W _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8G9 C11 C1 C 0 1 N N S N N N -13.598 -8.863 2.864 2.419 -0.148 -0.534 C11 8G9 1 8G9 C12 C2 C 0 1 N N N N N N -13.525 -8.750 1.356 1.073 -0.027 0.133 C12 8G9 2 8G9 C13 C3 C 0 1 N N N N N N -15.242 -6.922 1.440 0.507 2.117 -1.116 C13 8G9 3 8G9 C14 C4 C 0 1 N N S N N N -14.230 -7.593 -0.660 -1.018 1.370 0.484 C14 8G9 4 8G9 C15 C5 C 0 1 N N N N N N -12.912 -6.925 -0.977 -2.152 0.966 -0.421 C15 8G9 5 8G9 C16 C6 C 0 1 N N S N N N -15.834 -6.104 0.298 0.020 3.397 -0.403 C16 8G9 6 8G9 C17 C7 C 0 1 N N S N N N -10.863 -6.876 -2.283 -4.501 0.440 -0.803 C17 8G9 7 8G9 C18 C8 C 0 1 N N N N N N -16.826 -6.869 -0.563 0.369 3.576 1.076 C18 8G9 8 8G9 C19 C9 C 0 1 N N N N N N -9.838 -8.016 -2.349 -5.583 -0.264 0.019 C19 8G9 9 8G9 C20 C10 C 0 1 N N S N N N -9.757 -8.725 -0.995 -5.027 -1.576 0.575 C20 8G9 10 8G9 C21 C11 C 0 1 N N N N N N -9.062 -7.831 0.041 -4.692 -2.553 -0.575 C21 8G9 11 8G9 C22 C12 C 0 1 N N N N N N -7.926 -8.670 0.624 -5.085 -3.914 0.042 C22 8G9 12 8G9 C23 C13 C 0 1 N N N N N N -17.854 -6.024 -1.341 0.292 4.992 1.652 C23 8G9 13 8G9 C24 C14 C 0 1 N N N N N N -8.926 -9.980 -1.011 -6.085 -2.299 1.380 C24 8G9 14 8G9 C25 C15 C 0 1 N N N N N N -17.213 -8.331 -0.291 1.475 2.689 1.652 C25 8G9 15 8G9 C26 C16 C 0 1 N N N N N N -12.488 -8.572 5.087 1.781 -2.318 -1.597 C26 8G9 16 8G9 C27 C17 C 0 1 N N N N N N -18.188 -11.545 3.490 7.290 0.261 1.191 C27 8G9 17 8G9 C28 C18 C 0 1 N N N N N N -17.157 -11.507 5.765 7.401 -1.577 -0.497 C28 8G9 18 8G9 C29 C19 C 0 1 N N N N N N -17.052 -13.556 4.389 7.666 -2.095 1.933 C29 8G9 19 8G9 C30 C20 C 0 1 N N N N N N -12.258 -8.607 3.584 2.264 -0.890 -1.863 C30 8G9 20 8G9 C31 C21 C 0 1 N N N N N N -11.648 -7.262 3.205 1.243 -0.161 -2.738 C31 8G9 21 8G9 C32 C22 C 0 1 N N N N N N -11.211 -9.673 3.258 3.614 -0.934 -2.583 C32 8G9 22 8G9 C34 C23 C 0 1 N N R N N N -15.375 -6.646 -1.055 -0.988 2.905 0.656 C34 8G9 23 8G9 C7 C24 C 0 1 N N N N N N -17.019 -12.038 4.340 6.949 -1.205 0.916 C7 8G9 24 8G9 C8 C25 C 0 1 N N N N N N -11.023 -6.106 -3.596 -5.093 1.686 -1.465 C8 8G9 25 8G9 C9 C26 C 0 1 N N N N N N -15.346 -10.376 3.593 4.662 -0.714 0.230 C9 8G9 26 8G9 N10 N1 N 0 1 N N N N N N -14.097 -10.181 3.201 3.331 -0.893 0.338 N10 8G9 27 8G9 N13 N2 N 0 1 N N N N N N -14.296 -7.815 0.785 0.282 1.031 -0.134 N13 8G9 28 8G9 N16 N3 N 0 1 N N N N N N -12.161 -7.453 -1.944 -3.398 0.833 0.077 N16 8G9 29 8G9 N23 N4 N 0 1 N N N N N N -7.890 -9.890 -0.171 -6.099 -3.604 1.057 N23 8G9 30 8G9 N8 N5 N 0 1 N N N N N N -15.754 -11.637 3.729 5.501 -1.399 1.032 N8 8G9 31 8G9 O26 O1 O 0 1 N N N N N N -9.196 -10.952 -1.695 -6.813 -1.778 2.197 O26 8G9 32 8G9 O29 O2 O 0 1 N N N N N N -16.060 -9.408 3.825 5.107 0.066 -0.590 O29 8G9 33 8G9 O33 O3 O 0 1 N N N N N N -12.800 -9.495 0.685 0.703 -0.881 0.911 O33 8G9 34 8G9 O38 O4 O 0 1 N N N N N N -12.543 -5.934 -0.362 -1.945 0.761 -1.598 O38 8G9 35 8G9 O9 O5 O 0 1 N N N N N N -9.812 -5.449 -3.976 -5.684 2.521 -0.468 O9 8G9 36 8G9 H1 H1 H 0 1 N N N N N N -14.316 -8.112 3.224 2.825 0.846 -0.719 H1 8G9 37 8G9 H2 H2 H 0 1 N N N N N N -14.728 -6.270 2.162 -0.076 1.940 -2.020 H2 8G9 38 8G9 H3 H3 H 0 1 N N N N N N -16.026 -7.495 1.957 1.567 2.197 -1.358 H3 8G9 39 8G9 H4 H4 H 0 1 N N N N N N -14.320 -8.541 -1.210 -1.115 0.884 1.455 H4 8G9 40 8G9 H5 H5 H 0 1 N N N N N N -15.958 -5.018 0.425 -0.176 4.275 -1.019 H5 8G9 41 8G9 H6 H6 H 0 1 N N N N N N -10.555 -6.171 -1.496 -4.129 -0.238 -1.571 H6 8G9 42 8G9 H7 H7 H 0 1 N N N N N N -10.145 -8.738 -3.120 -5.889 0.380 0.843 H7 8G9 43 8G9 H8 H8 H 0 1 N N N N N N -8.851 -7.604 -2.604 -6.443 -0.474 -0.617 H8 8G9 44 8G9 H9 H9 H 0 1 N N N N N N -10.774 -8.960 -0.647 -4.144 -1.387 1.185 H9 8G9 45 8G9 H10 H10 H 0 1 N N N N N N -8.661 -6.927 -0.441 -5.293 -2.337 -1.458 H10 8G9 46 8G9 H11 H11 H 0 1 N N N N N N -9.769 -7.542 0.832 -3.629 -2.526 -0.813 H11 8G9 47 8G9 H12 H12 H 0 1 N N N N N N -8.126 -8.906 1.680 -5.505 -4.567 -0.723 H12 8G9 48 8G9 H13 H13 H 0 1 N N N N N N -18.863 -6.222 -0.950 1.297 5.345 1.883 H13 8G9 49 8G9 H14 H14 H 0 1 N N N N N N -17.617 -4.957 -1.220 -0.167 5.657 0.921 H14 8G9 50 8G9 H15 H15 H 0 1 N N N N N N -17.815 -6.290 -2.408 -0.308 4.982 2.562 H15 8G9 51 8G9 H16 H16 H 0 1 N N N N N N -16.405 -8.827 0.267 2.345 3.302 1.890 H16 8G9 52 8G9 H17 H17 H 0 1 N N N N N N -18.139 -8.361 0.301 1.115 2.202 2.558 H17 8G9 53 8G9 H18 H18 H 0 1 N N N N N N -17.372 -8.852 -1.247 1.753 1.933 0.918 H18 8G9 54 8G9 H19 H19 H 0 1 N N N N N N -11.533 -8.389 5.601 0.820 -2.286 -1.084 H19 8G9 55 8G9 H20 H20 H 0 1 N N N N N N -13.195 -7.765 5.331 1.671 -2.846 -2.544 H20 8G9 56 8G9 H21 H21 H 0 1 N N N N N N -12.903 -9.536 5.417 2.509 -2.837 -0.974 H21 8G9 57 8G9 H22 H22 H 0 1 N N N N N N -19.136 -11.851 3.957 8.366 0.406 1.104 H22 8G9 58 8G9 H23 H23 H 0 1 N N N N N N -18.152 -10.448 3.418 6.778 0.895 0.467 H23 8G9 59 8G9 H24 H24 H 0 1 N N N N N N -18.118 -11.981 2.482 6.967 0.527 2.198 H24 8G9 60 8G9 H25 H25 H 0 1 N N N N N N -16.313 -11.864 6.373 8.478 -1.432 -0.584 H25 8G9 61 8G9 H26 H26 H 0 1 N N N N N N -17.157 -10.407 5.748 7.158 -2.622 -0.693 H26 8G9 62 8G9 H27 H27 H 0 1 N N N N N N -18.101 -11.867 6.200 6.890 -0.943 -1.222 H27 8G9 63 8G9 H28 H28 H 0 1 N N N N N N -16.213 -13.922 4.999 7.344 -1.829 2.940 H28 8G9 64 8G9 H29 H29 H 0 1 N N N N N N -18.002 -13.888 4.834 7.423 -3.139 1.737 H29 8G9 65 8G9 H30 H30 H 0 1 N N N N N N -16.965 -13.958 3.369 8.743 -1.950 1.846 H30 8G9 66 8G9 H31 H31 H 0 1 N N N N N N -10.698 -7.126 3.742 1.611 0.838 -2.972 H31 8G9 67 8G9 H32 H32 H 0 1 N N N N N N -11.464 -7.236 2.121 1.093 -0.719 -3.663 H32 8G9 68 8G9 H33 H33 H 0 1 N N N N N N -12.343 -6.454 3.479 0.296 -0.083 -2.204 H33 8G9 69 8G9 H34 H34 H 0 1 N N N N N N -10.277 -9.446 3.794 4.341 -1.454 -1.960 H34 8G9 70 8G9 H35 H35 H 0 1 N N N N N N -11.583 -10.660 3.571 3.503 -1.463 -3.530 H35 8G9 71 8G9 H36 H36 H 0 1 N N N N N N -11.020 -9.680 2.175 3.957 0.083 -2.773 H36 8G9 72 8G9 H37 H37 H 0 1 N N N N N N -15.208 -5.936 -1.878 -1.932 3.409 0.861 H37 8G9 73 8G9 H38 H38 H 0 1 N N N N N N -11.814 -5.352 -3.472 -4.303 2.235 -1.977 H38 8G9 74 8G9 H39 H39 H 0 1 N Y N N N N -11.310 -6.811 -4.390 -5.854 1.387 -2.186 H39 8G9 75 8G9 H40 H40 H 0 1 N N N N N N -13.480 -10.965 3.136 2.976 -1.515 0.992 H40 8G9 76 8G9 H41 H41 H 0 1 N N N N N N -12.491 -8.254 -2.443 -3.563 0.998 1.019 H41 8G9 77 8G9 H42 H42 H 0 1 N N N N N N -15.152 -12.360 3.389 5.147 -2.022 1.687 H42 8G9 78 8G9 H43 H43 H 0 1 N N N N N N -9.947 -4.982 -4.792 -6.081 3.331 -0.817 H43 8G9 79 8G9 H44 H44 H 0 1 N N N N N N -6.970 -8.131 0.543 -4.217 -4.383 0.504 H44 8G9 80 8G9 H45 H45 H 0 1 N N N N N N -7.172 -10.582 -0.097 -6.701 -4.258 1.446 H45 8G9 81 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8G9 O9 C8 SING N N 1 8G9 C8 C17 SING N N 2 8G9 C19 C17 SING N N 3 8G9 C19 C20 SING N N 4 8G9 C17 N16 SING N N 5 8G9 N16 C15 SING N N 6 8G9 O26 C24 DOUB N N 7 8G9 C23 C18 SING N N 8 8G9 C34 C14 SING N N 9 8G9 C34 C18 SING N N 10 8G9 C34 C16 SING N N 11 8G9 C24 C20 SING N N 12 8G9 C24 N23 SING N N 13 8G9 C20 C21 SING N N 14 8G9 C15 C14 SING N N 15 8G9 C15 O38 DOUB N N 16 8G9 C14 N13 SING N N 17 8G9 C18 C25 SING N N 18 8G9 C18 C16 SING N N 19 8G9 N23 C22 SING N N 20 8G9 C21 C22 SING N N 21 8G9 C16 C13 SING N N 22 8G9 O33 C12 DOUB N N 23 8G9 N13 C12 SING N N 24 8G9 N13 C13 SING N N 25 8G9 C12 C11 SING N N 26 8G9 C11 N10 SING N N 27 8G9 C11 C30 SING N N 28 8G9 N10 C9 SING N N 29 8G9 C31 C30 SING N N 30 8G9 C32 C30 SING N N 31 8G9 C27 C7 SING N N 32 8G9 C30 C26 SING N N 33 8G9 C9 N8 SING N N 34 8G9 C9 O29 DOUB N N 35 8G9 N8 C7 SING N N 36 8G9 C7 C29 SING N N 37 8G9 C7 C28 SING N N 38 8G9 C11 H1 SING N N 39 8G9 C13 H2 SING N N 40 8G9 C13 H3 SING N N 41 8G9 C14 H4 SING N N 42 8G9 C16 H5 SING N N 43 8G9 C17 H6 SING N N 44 8G9 C19 H7 SING N N 45 8G9 C19 H8 SING N N 46 8G9 C20 H9 SING N N 47 8G9 C21 H10 SING N N 48 8G9 C21 H11 SING N N 49 8G9 C22 H12 SING N N 50 8G9 C23 H13 SING N N 51 8G9 C23 H14 SING N N 52 8G9 C23 H15 SING N N 53 8G9 C25 H16 SING N N 54 8G9 C25 H17 SING N N 55 8G9 C25 H18 SING N N 56 8G9 C26 H19 SING N N 57 8G9 C26 H20 SING N N 58 8G9 C26 H21 SING N N 59 8G9 C27 H22 SING N N 60 8G9 C27 H23 SING N N 61 8G9 C27 H24 SING N N 62 8G9 C28 H25 SING N N 63 8G9 C28 H26 SING N N 64 8G9 C28 H27 SING N N 65 8G9 C29 H28 SING N N 66 8G9 C29 H29 SING N N 67 8G9 C29 H30 SING N N 68 8G9 C31 H31 SING N N 69 8G9 C31 H32 SING N N 70 8G9 C31 H33 SING N N 71 8G9 C32 H34 SING N N 72 8G9 C32 H35 SING N N 73 8G9 C32 H36 SING N N 74 8G9 C34 H37 SING N N 75 8G9 C8 H38 SING N N 76 8G9 C8 H39 SING N N 77 8G9 N10 H40 SING N N 78 8G9 N16 H41 SING N N 79 8G9 N8 H42 SING N N 80 8G9 O9 H43 SING N N 81 8G9 C22 H44 SING N N 82 8G9 N23 H45 SING N N 83 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8G9 SMILES ACDLabs 12.01 "CC1(C)C2C(C(=O)NC(CC3CCNC3=O)CO)N(CC21)C(=O)C(NC(=O)NC(C)(C)C)C(C)(C)C" 8G9 InChI InChI 1.03 "InChI=1S/C26H45N5O5/c1-24(2,3)19(29-23(36)30-25(4,5)6)22(35)31-12-16-17(26(16,7)8)18(31)21(34)28-15(13-32)11-14-9-10-27-20(14)33/h14-19,32H,9-13H2,1-8H3,(H,27,33)(H,28,34)(H2,29,30,36)/t14-,15-,16-,17-,18-,19+/m0/s1" 8G9 InChIKey InChI 1.03 BKEPDWNBCUBDEN-KOUJMVCDSA-N 8G9 SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)NC(=O)N[C@H](C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@H](CO)C[C@@H]3CCNC3=O)C2(C)C)C(C)(C)C" 8G9 SMILES CACTVS 3.385 "CC(C)(C)NC(=O)N[CH](C(=O)N1C[CH]2[CH]([CH]1C(=O)N[CH](CO)C[CH]3CCNC3=O)C2(C)C)C(C)(C)C" 8G9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)[C@H](C(C)(C)C)NC(=O)NC(C)(C)C)C(=O)N[C@@H](C[C@@H]3CCNC3=O)CO)C" 8G9 SMILES "OpenEye OEToolkits" 2.0.7 "CC1(C2C1C(N(C2)C(=O)C(C(C)(C)C)NC(=O)NC(C)(C)C)C(=O)NC(CC3CCNC3=O)CO)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 8G9 "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S,5S)-3-[N-(tert-butylcarbamoyl)-3-methyl-L-valyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" 8G9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},5~{S})-3-[(2~{S})-2-(~{tert}-butylcarbamoylamino)-3,3-dimethyl-butanoyl]-6,6-dimethyl-~{N}-[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8G9 "Create component" 2021-09-16 RCSB 8G9 "Initial release" 2022-07-27 RCSB 8G9 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 8G9 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C8 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #