data_8H5
#
_chem_comp.id 8H5
_chem_comp.name Verruculogen
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H33 N3 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-10-13
_chem_comp.pdbx_modified_date 2022-08-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 511.567
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 8H5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7PXG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8H5 C1 C1 C 0 1 Y N N 167.780 156.363 134.127 0.447 -0.237 -0.101 C1 8H5 1
8H5 C10 C2 C 0 1 N N S 170.135 155.657 133.890 -0.885 1.867 -0.093 C10 8H5 2
8H5 C11 C3 C 0 1 Y N N 168.698 155.589 133.503 0.411 1.102 -0.143 C11 8H5 3
8H5 C12 C4 C 0 1 Y N N 168.017 154.813 132.515 1.781 1.544 -0.248 C12 8H5 4
8H5 C13 C5 C 0 1 Y N N 168.386 153.850 131.565 2.373 2.795 -0.446 C13 8H5 5
8H5 C14 C6 C 0 1 Y N N 167.421 153.304 130.766 3.743 2.833 -0.511 C14 8H5 6
8H5 C15 C7 C 0 1 Y N N 166.090 153.674 130.864 4.521 1.688 -0.382 C15 8H5 7
8H5 C16 C8 C 0 1 Y N N 165.683 154.615 131.784 3.958 0.434 -0.180 C16 8H5 8
8H5 C17 C9 C 0 1 Y N N 166.672 155.170 132.599 2.570 0.369 -0.112 C17 8H5 9
8H5 C18 C10 C 0 1 N N R 165.204 156.689 133.894 2.141 -2.051 0.423 C18 8H5 10
8H5 C19 C11 C 0 1 N N N 164.393 155.833 134.805 1.195 -2.614 1.452 C19 8H5 11
8H5 C2 C12 C 0 1 N N S 168.110 157.321 135.224 -0.777 -1.151 -0.107 C2 8H5 12
8H5 C20 C13 C 0 1 N N N 163.072 155.742 134.790 1.496 -2.548 2.725 C20 8H5 13
8H5 C21 C14 C 0 1 N N N 162.341 154.854 135.741 2.724 -1.796 3.170 C21 8H5 14
8H5 C22 C15 C 0 1 N N N 162.189 156.503 133.849 0.616 -3.224 3.744 C22 8H5 15
8H5 C23 C16 C 0 1 N N N 168.281 158.745 134.641 -0.974 -1.563 -1.606 C23 8H5 16
8H5 C24 C17 C 0 1 N N N 167.027 159.562 134.372 0.393 -2.086 -2.111 C24 8H5 17
8H5 C25 C18 C 0 1 N N N 167.358 160.700 133.424 1.410 -0.945 -2.048 C25 8H5 18
8H5 C26 C19 C 0 1 N N N 166.387 160.078 135.643 0.243 -2.531 -3.567 C26 8H5 19
8H5 C27 C20 C 0 1 N N N 163.849 153.192 130.201 6.407 3.107 -0.668 C27 8H5 20
8H5 C3 C21 C 0 1 N N N 169.604 157.492 137.114 -3.158 -0.879 -0.128 C3 8H5 21
8H5 C4 C22 C 0 1 N N S 170.913 157.214 137.794 -4.483 -0.225 0.082 C4 8H5 22
8H5 C5 C23 C 0 1 N N N 171.553 158.388 138.507 -5.315 -0.216 -1.214 C5 8H5 23
8H5 C6 C24 C 0 1 N N N 173.006 157.952 138.628 -6.036 1.151 -1.212 C6 8H5 24
8H5 C7 C25 C 0 1 N N N 173.291 157.213 137.342 -5.565 1.849 0.085 C7 8H5 25
8H5 C8 C26 C 0 1 N N N 171.726 156.171 135.745 -3.153 1.738 0.864 C8 8H5 26
8H5 C9 C27 C 0 1 N N R 170.270 155.826 135.411 -1.844 1.010 0.760 C9 8H5 27
8H5 N1 N1 N 0 1 Y N N 166.518 156.128 133.590 1.712 -0.693 0.078 N1 8H5 28
8H5 N2 N2 N 0 1 N N N 169.363 156.873 135.915 -1.975 -0.317 0.180 N2 8H5 29
8H5 N3 N3 N 0 1 N N N 171.962 156.811 136.865 -4.282 1.202 0.403 N3 8H5 30
8H5 O1 O1 O 0 1 N N N 165.270 157.961 134.498 2.166 -2.902 -0.680 O1 8H5 31
8H5 O2 O2 O 0 1 N N N 166.052 158.821 133.583 0.881 -3.168 -1.353 O2 8H5 32
8H5 O3 O3 O 0 1 N N N 168.805 158.244 137.655 -3.147 -1.992 -0.609 O3 8H5 33
8H5 O4 O4 O 0 1 N N N 172.624 155.842 134.967 -3.183 2.836 1.378 O4 8H5 34
8H5 O5 O5 O 0 1 N N N 170.069 154.618 136.090 -1.292 0.869 2.071 O5 8H5 35
8H5 O6 O6 O 0 1 N N N 170.791 154.495 133.439 -0.685 3.142 0.521 O6 8H5 36
8H5 O7 O7 O 0 1 N N N 165.244 153.042 130.001 5.874 1.798 -0.458 O7 8H5 37
8H5 H1 H1 H 0 1 N N N 170.582 156.541 133.412 -1.287 1.993 -1.098 H1 8H5 38
8H5 H2 H2 H 0 1 N N N 169.417 153.544 131.466 1.778 3.691 -0.544 H2 8H5 39
8H5 H3 H3 H 0 1 N N N 167.705 152.561 130.036 4.233 3.783 -0.666 H3 8H5 40
8H5 H4 H4 H 0 1 N N N 164.648 154.910 131.871 4.570 -0.450 -0.080 H4 8H5 41
8H5 H5 H5 H 0 1 N N N 164.650 156.781 132.948 3.141 -2.003 0.854 H5 8H5 42
8H5 H6 H6 H 0 1 N N N 164.924 155.240 135.535 0.268 -3.072 1.139 H6 8H5 43
8H5 H7 H7 H 0 1 N N N 167.284 157.338 135.950 -0.676 -1.998 0.572 H7 8H5 44
8H5 H8 H8 H 0 1 N N N 163.063 154.337 136.390 2.448 -0.775 3.437 H8 8H5 45
8H5 H9 H9 H 0 1 N N N 161.661 155.459 136.358 3.160 -2.292 4.037 H9 8H5 46
8H5 H10 H10 H 0 1 N N N 161.760 154.111 135.175 3.452 -1.775 2.359 H10 8H5 47
8H5 H11 H11 H 0 1 N N N 161.137 156.247 134.045 -0.216 -3.713 3.238 H11 8H5 48
8H5 H12 H12 H 0 1 N N N 162.338 157.583 133.999 1.196 -3.967 4.290 H12 8H5 49
8H5 H13 H13 H 0 1 N N N 162.444 156.238 132.812 0.230 -2.480 4.441 H13 8H5 50
8H5 H14 H14 H 0 1 N N N 168.817 158.645 133.686 -1.724 -2.350 -1.681 H14 8H5 51
8H5 H15 H15 H 0 1 N N N 168.898 159.317 135.350 -1.283 -0.698 -2.193 H15 8H5 52
8H5 H16 H16 H 0 1 N N N 168.101 161.363 133.891 0.915 -0.034 -1.712 H16 8H5 53
8H5 H17 H17 H 0 1 N N N 167.768 160.291 132.489 2.206 -1.205 -1.350 H17 8H5 54
8H5 H18 H18 H 0 1 N N N 166.444 161.271 133.204 1.836 -0.782 -3.039 H18 8H5 55
8H5 H19 H19 H 0 1 N N N 166.159 159.233 136.309 -0.076 -1.685 -4.175 H19 8H5 56
8H5 H20 H20 H 0 1 N N N 167.080 160.766 136.149 1.200 -2.902 -3.934 H20 8H5 57
8H5 H21 H21 H 0 1 N N N 165.457 160.610 135.395 -0.502 -3.325 -3.629 H21 8H5 58
8H5 H22 H22 H 0 1 N N N 163.305 152.627 129.430 6.027 3.508 -1.608 H22 8H5 59
8H5 H23 H23 H 0 1 N N N 163.578 152.809 131.196 6.106 3.758 0.153 H23 8H5 60
8H5 H24 H24 H 0 1 N N N 163.581 154.257 130.133 7.495 3.054 -0.708 H24 8H5 61
8H5 H25 H25 H 0 1 N N N 170.758 156.410 138.528 -5.030 -0.728 0.879 H25 8H5 62
8H5 H26 H26 H 0 1 N N N 171.463 159.310 137.913 -4.664 -0.301 -2.084 H26 8H5 63
8H5 H27 H27 H 0 1 N N N 171.102 158.545 139.498 -6.042 -1.028 -1.203 H27 8H5 64
8H5 H28 H28 H 0 1 N N N 173.141 157.289 139.495 -5.744 1.734 -2.085 H28 8H5 65
8H5 H29 H29 H 0 1 N N N 173.667 158.826 138.728 -7.117 1.009 -1.197 H29 8H5 66
8H5 H30 H30 H 0 1 N N N 173.923 156.332 137.528 -5.421 2.915 -0.087 H30 8H5 67
8H5 H31 H31 H 0 1 N N N 173.786 157.872 136.613 -6.284 1.687 0.888 H31 8H5 68
8H5 H32 H32 H 0 1 N N N 170.160 154.761 137.025 -1.160 1.707 2.534 H32 8H5 69
8H5 H33 H33 H 0 1 N N N 171.679 154.482 133.775 -0.091 3.726 0.030 H33 8H5 70
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8H5 O7 C27 SING N N 1
8H5 O7 C15 SING N N 2
8H5 C14 C15 DOUB Y N 3
8H5 C14 C13 SING Y N 4
8H5 C15 C16 SING Y N 5
8H5 C13 C12 DOUB Y N 6
8H5 C16 C17 DOUB Y N 7
8H5 C12 C17 SING Y N 8
8H5 C12 C11 SING Y N 9
8H5 C17 N1 SING Y N 10
8H5 C25 C24 SING N N 11
8H5 O6 C10 SING N N 12
8H5 C11 C10 SING N N 13
8H5 C11 C1 DOUB Y N 14
8H5 O2 C24 SING N N 15
8H5 O2 O1 SING N N 16
8H5 N1 C18 SING N N 17
8H5 N1 C1 SING Y N 18
8H5 C22 C20 SING N N 19
8H5 C10 C9 SING N N 20
8H5 C18 O1 SING N N 21
8H5 C18 C19 SING N N 22
8H5 C1 C2 SING N N 23
8H5 C24 C23 SING N N 24
8H5 C24 C26 SING N N 25
8H5 C23 C2 SING N N 26
8H5 C20 C19 DOUB N N 27
8H5 C20 C21 SING N N 28
8H5 O4 C8 DOUB N N 29
8H5 C2 N2 SING N N 30
8H5 C9 C8 SING N N 31
8H5 C9 N2 SING N N 32
8H5 C9 O5 SING N N 33
8H5 C8 N3 SING N N 34
8H5 N2 C3 SING N N 35
8H5 N3 C7 SING N N 36
8H5 N3 C4 SING N N 37
8H5 C3 O3 DOUB N N 38
8H5 C3 C4 SING N N 39
8H5 C7 C6 SING N N 40
8H5 C4 C5 SING N N 41
8H5 C5 C6 SING N N 42
8H5 C10 H1 SING N N 43
8H5 C13 H2 SING N N 44
8H5 C14 H3 SING N N 45
8H5 C16 H4 SING N N 46
8H5 C18 H5 SING N N 47
8H5 C19 H6 SING N N 48
8H5 C2 H7 SING N N 49
8H5 C21 H8 SING N N 50
8H5 C21 H9 SING N N 51
8H5 C21 H10 SING N N 52
8H5 C22 H11 SING N N 53
8H5 C22 H12 SING N N 54
8H5 C22 H13 SING N N 55
8H5 C23 H14 SING N N 56
8H5 C23 H15 SING N N 57
8H5 C25 H16 SING N N 58
8H5 C25 H17 SING N N 59
8H5 C25 H18 SING N N 60
8H5 C26 H19 SING N N 61
8H5 C26 H20 SING N N 62
8H5 C26 H21 SING N N 63
8H5 C27 H22 SING N N 64
8H5 C27 H23 SING N N 65
8H5 C27 H24 SING N N 66
8H5 C4 H25 SING N N 67
8H5 C5 H26 SING N N 68
8H5 C5 H27 SING N N 69
8H5 C6 H28 SING N N 70
8H5 C6 H29 SING N N 71
8H5 C7 H30 SING N N 72
8H5 C7 H31 SING N N 73
8H5 O5 H32 SING N N 74
8H5 O6 H33 SING N N 75
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8H5 InChI InChI 1.06 "InChI=1S/C27H33N3O7/c1-14(2)11-20-29-18-12-15(35-5)8-9-16(18)21-22(29)19(13-26(3,4)37-36-20)30-24(32)17-7-6-10-28(17)25(33)27(30,34)23(21)31/h8-9,11-12,17,19-20,23,31,34H,6-7,10,13H2,1-5H3/t17-,19-,20+,23-,27+/m0/s1"
8H5 InChIKey InChI 1.06 LRXYHMMJJCTUMY-GWXUGYLUSA-N
8H5 SMILES_CANONICAL CACTVS 3.385 "COc1ccc2c(c1)n3[C@H](OOC(C)(C)C[C@@H]4N5C(=O)[C@@H]6CCCN6C(=O)[C@]5(O)[C@@H](O)c2c34)C=C(C)C"
8H5 SMILES CACTVS 3.385 "COc1ccc2c(c1)n3[CH](OOC(C)(C)C[CH]4N5C(=O)[CH]6CCCN6C(=O)[C]5(O)[CH](O)c2c34)C=C(C)C"
8H5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=C[C@@H]1n2c3cc(ccc3c4c2[C@H](CC(OO1)(C)C)N5C(=O)[C@@H]6CCCN6C(=O)[C@@]5([C@H]4O)O)OC)C"
8H5 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=CC1n2c3cc(ccc3c4c2C(CC(OO1)(C)C)N5C(=O)C6CCCN6C(=O)C5(C4O)O)OC)C"
#
_pdbx_chem_comp_identifier.comp_id 8H5
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 3.1.0.0
_pdbx_chem_comp_identifier.identifier "(9~{R},14~{S},17~{S},23~{R},24~{S})-5-methoxy-12,12-dimethyl-9-(2-methylprop-1-enyl)-23,24-bis(oxidanyl)-10,11-dioxa-8,15,21-triazahexacyclo[12.10.1.0^{2,7}.0^{8,25}.0^{15,23}.0^{17,21}]pentacosa-1(25),2,4,6-tetraene-16,22-dione"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8H5 "Create component" 2021-10-13 PDBE
8H5 "Initial release" 2021-12-15 RCSB
8H5 "Modify descriptor" 2022-08-22 RCSB
#