data_8HG # _chem_comp.id 8HG _chem_comp.name "2'-DEOXY-8-OXOGUANOSINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H13 N5 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-10-21 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 283.241 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8HG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1XQP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8HG O6 O6 O 0 1 N N N 12.474 23.572 30.884 4.447 -1.638 0.019 O1 8HG 1 8HG C6 C6 C 0 1 N N N 11.467 23.818 30.219 3.667 -0.701 0.072 C1 8HG 2 8HG N1 N1 N 0 1 N N N 10.535 22.775 30.048 4.114 0.560 0.265 N1 8HG 3 8HG C2 C2 C 0 1 N N N 9.314 22.936 29.345 3.233 1.597 0.321 C2 8HG 4 8HG N2 N2 N 0 1 N N N 8.505 21.820 29.217 3.709 2.868 0.518 N2 8HG 5 8HG N3 N3 N 0 1 N N N 9.001 24.103 28.803 1.938 1.410 0.191 N3 8HG 6 8HG C4 C4 C 0 1 N N N 9.880 25.132 28.939 1.432 0.186 -0.004 C3 8HG 7 8HG C5 C5 C 0 1 N N N 11.078 25.052 29.579 2.287 -0.906 -0.074 C4 8HG 8 8HG N7 N7 N 0 1 N N N 11.744 26.315 29.508 1.491 -2.034 -0.287 N4 8HG 9 8HG C8 C8 C 0 1 N N N 10.864 27.199 28.810 0.207 -1.628 -0.347 C5 8HG 10 8HG O20 O20 O 0 1 N N N 11.042 28.399 28.579 -0.752 -2.356 -0.522 O2 8HG 11 8HG N9 N9 N 0 1 N N N 9.731 26.444 28.425 0.150 -0.295 -0.170 N5 8HG 12 8HG "C1'" "C1'" C 0 1 N N R 8.571 26.959 27.701 -1.072 0.514 -0.172 C6 8HG 13 8HG "O4'" "O4'" O 0 1 N N N 7.535 26.989 28.667 -2.020 -0.007 0.786 O3 8HG 14 8HG "C2'" "C2'" C 0 1 N N N 8.022 26.174 26.539 -1.788 0.404 -1.536 C7 8HG 15 8HG "C3'" "C3'" C 0 1 N N S 6.526 26.515 26.564 -3.290 0.401 -1.172 C8 8HG 16 8HG "O3'" "O3'" O 0 1 N N N 6.202 27.699 25.846 -3.950 1.524 -1.759 O4 8HG 17 8HG "C4'" "C4'" C 0 1 N N R 6.245 26.720 28.067 -3.303 0.508 0.368 C9 8HG 18 8HG "C5'" "C5'" C 0 1 N N N 5.493 25.482 28.632 -4.434 -0.342 0.952 C10 8HG 19 8HG "O5'" "O5'" O 0 1 N N N 6.040 24.255 28.371 -4.455 -0.195 2.373 O5 8HG 20 8HG HN1 HN1 H 0 1 N N N 10.744 21.880 30.441 5.064 0.726 0.365 H1 8HG 21 8HG HN21 HN21 H 0 0 N N N 7.688 22.082 28.704 4.662 3.020 0.616 H2 8HG 22 8HG HN22 HN22 H 0 0 N N N 8.704 20.908 29.576 3.092 3.615 0.560 H3 8HG 23 8HG "H1'" "H1'" H 0 1 N N N 8.906 27.905 27.251 -0.838 1.554 0.054 H4 8HG 24 8HG "H2'1" "H2'1" H 0 0 N N N 8.491 26.473 25.590 -1.549 1.263 -2.163 H5 8HG 25 8HG "H2'2" "H2'2" H 0 0 N N N 8.218 25.095 26.619 -1.514 -0.524 -2.038 H6 8HG 26 8HG "H3'" "H3'" H 0 1 N N N 5.927 25.727 26.084 -3.759 -0.528 -1.497 H7 8HG 27 8HG H1 H1 H 0 1 N N N 6.130 28.427 26.452 -3.919 1.539 -2.725 H8 8HG 28 8HG "H4'" "H4'" H 0 1 N N N 5.576 27.564 28.290 -3.413 1.548 0.675 H9 8HG 29 8HG "H5'1" "H5'1" H 0 0 N N N 5.460 25.595 29.726 -5.387 -0.013 0.538 H10 8HG 30 8HG "H5'2" "H5'2" H 0 0 N N N 4.515 25.479 28.128 -4.269 -1.389 0.697 H11 8HG 31 8HG "H5'" "H5'" H 0 1 N N N 6.167 24.157 27.435 -5.149 -0.707 2.811 H12 8HG 32 8HG H13 H13 H 0 1 N N N 12.648 26.536 29.875 1.806 -2.947 -0.376 H13 8HG 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8HG O6 C6 DOUB N N 1 8HG C6 N1 SING N N 2 8HG C6 C5 SING N N 3 8HG N1 C2 SING N N 4 8HG N1 HN1 SING N N 5 8HG C2 N2 SING N N 6 8HG C2 N3 DOUB N N 7 8HG N2 HN21 SING N N 8 8HG N2 HN22 SING N N 9 8HG N3 C4 SING N N 10 8HG C4 C5 DOUB N N 11 8HG C4 N9 SING N N 12 8HG C5 N7 SING N N 13 8HG N7 C8 SING N N 14 8HG C8 O20 DOUB N N 15 8HG C8 N9 SING N N 16 8HG N9 "C1'" SING N N 17 8HG "C1'" "O4'" SING N N 18 8HG "C1'" "C2'" SING N N 19 8HG "C1'" "H1'" SING N N 20 8HG "O4'" "C4'" SING N N 21 8HG "C2'" "C3'" SING N N 22 8HG "C2'" "H2'1" SING N N 23 8HG "C2'" "H2'2" SING N N 24 8HG "C3'" "O3'" SING N N 25 8HG "C3'" "C4'" SING N N 26 8HG "C3'" "H3'" SING N N 27 8HG "O3'" H1 SING N N 28 8HG "C4'" "C5'" SING N N 29 8HG "C4'" "H4'" SING N N 30 8HG "C5'" "O5'" SING N N 31 8HG "C5'" "H5'1" SING N N 32 8HG "C5'" "H5'2" SING N N 33 8HG "O5'" "H5'" SING N N 34 8HG N7 H13 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8HG SMILES ACDLabs 10.04 "O=C1C=2NC(=O)N(C=2N=C(N)N1)C3OC(C(O)C3)CO" 8HG SMILES_CANONICAL CACTVS 3.341 "NC1=NC2=C(NC(=O)N2[C@H]3C[C@H](O)[C@@H](CO)O3)C(=O)N1" 8HG SMILES CACTVS 3.341 "NC1=NC2=C(NC(=O)N2[CH]3C[CH](O)[CH](CO)O3)C(=O)N1" 8HG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H](O[C@H]1N2C3=C(C(=O)NC(=N3)N)NC2=O)CO)O" 8HG SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(OC1N2C3=C(C(=O)NC(=N3)N)NC2=O)CO)O" 8HG InChI InChI 1.03 "InChI=1S/C10H13N5O5/c11-9-13-7-6(8(18)14-9)12-10(19)15(7)5-1-3(17)4(2-16)20-5/h3-5,16-17H,1-2H2,(H,12,19)(H3,11,13,14,18)/t3-,4+,5+/m0/s1" 8HG InChIKey InChI 1.03 HCAJQHYUCKICQH-VPENINKCSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 8HG "SYSTEMATIC NAME" ACDLabs 10.04 "2'-deoxy-8-oxoguanosine" 8HG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-amino-9-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-1,7-dihydropurine-6,8-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8HG "Create component" 2004-10-21 RCSB 8HG "Modify descriptor" 2011-06-04 RCSB #