data_8I4 # _chem_comp.id 8I4 _chem_comp.name "(2R,3S,5R,6R)-2,3,4,5,6-pentakis(oxidanyl)cyclohexane-1-carboxylic acid" _chem_comp.type saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C7 H12 O7" _chem_comp.mon_nstd_parent_comp_id GTR _chem_comp.pdbx_synonyms "(2R)-5-[(E)-2-(2,4-dinitrophenyl)ethenyl]-2-[(1R)-2-oxidanyl-2-oxidanylidene-1-(2-thiophen-2-ylethanoylamino)ethyl]-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-09-16 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 208.166 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8I4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7PR6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8I4 C3 C1 C 0 1 N N S N N N -12.254 -2.147 49.737 1.241 -1.056 -0.079 C3 8I4 1 8I4 C5 C2 C 0 1 N N N N N N -13.858 -2.072 51.713 -0.914 0.151 -0.460 C5 8I4 2 8I4 C6 C3 C 0 1 N N N N N N -14.815 -2.838 52.589 -2.389 0.160 -0.153 C6 8I4 3 8I4 O3 O3 O 0 1 N N N N N N -11.620 -2.910 48.706 1.854 -2.174 0.566 O3 8I4 4 8I4 O4 O4 O 0 1 N N N N N N -14.361 -3.506 49.773 -0.851 -2.256 -0.245 O4 8I4 5 8I4 C1 C4 C 0 1 N N S N N N -11.836 -0.570 51.687 1.219 1.436 -0.260 C1 8I4 6 8I4 C2 C5 C 0 1 N N N N N N -11.200 -1.413 50.614 1.876 0.239 0.431 C2 8I4 7 8I4 C4 C6 C 0 1 N N R N N N -13.279 -2.964 50.579 -0.257 -1.046 0.232 C4 8I4 8 8I4 C7 C7 C 0 1 N N R N N N -12.794 -1.328 52.547 -0.279 1.446 0.051 C7 8I4 9 8I4 O2 O2 O 0 1 N N N N N N -10.517 -0.490 49.780 3.275 0.230 0.140 O2 8I4 10 8I4 O6B O8 O 0 1 N N N N N N -14.312 -3.384 53.565 -3.156 -0.882 -0.512 O6B 8I4 11 8I4 O6A O6 O 0 1 N N N N N N -16.063 -2.885 52.309 -2.882 1.106 0.415 O6A 8I4 12 8I4 H3 H1 H 0 1 N N N N N N -12.837 -1.355 49.244 1.388 -1.133 -1.157 H3 8I4 13 8I4 H5 H2 H 0 1 N N N N N N -14.451 -1.293 51.211 -0.767 0.074 -1.537 H5 8I4 14 8I4 HO3 H3 H 0 1 N Y N N N N -11.010 -2.357 48.232 2.806 -2.243 0.412 HO3 8I4 15 8I4 HO4 H4 H 0 1 N Y N N N N -14.957 -3.994 50.329 -0.482 -3.057 0.151 HO4 8I4 16 8I4 H1 H5 H 0 1 N N N N N N -11.051 -0.122 52.314 1.672 2.359 0.103 H1 8I4 17 8I4 H2 H7 H 0 1 N N N N N N -10.512 -2.146 51.059 1.729 0.316 1.508 H2 8I4 18 8I4 H4 H8 H 0 1 N N N N N N -12.735 -3.795 51.052 -0.404 -0.969 1.309 H4 8I4 19 8I4 H7 H9 H 0 1 N N N N N N -12.142 -2.203 52.687 -0.746 2.298 -0.442 H7 8I4 20 8I4 HO2 H10 H 0 1 N Y N N N N -9.864 -0.025 50.290 3.743 1.023 0.436 HO2 8I4 21 8I4 HO6B H11 H 0 0 N N N N N N -14.987 -3.833 54.060 -4.097 -0.830 -0.294 HO6B 8I4 22 8I4 O1 O1 O 0 1 N Y N N N N -12.604 0.428 51.056 1.412 1.335 -1.673 O1 8I4 23 8I4 HO1 H6 H 0 1 N Y N N N N -13.017 0.974 51.715 2.340 1.323 -1.943 HO1 8I4 24 8I4 O7 O7 O 0 1 N N N N N N ? ? ? -0.471 1.547 1.463 O7 8I4 25 8I4 HO7 H12 H 0 1 N N N N N N ? ? ? -0.093 2.346 1.855 HO7 8I4 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8I4 O3 C3 SING N N 1 8I4 C3 C4 SING N N 2 8I4 C3 C2 SING N N 3 8I4 O4 C4 SING N N 4 8I4 O2 C2 SING N N 5 8I4 C4 C5 SING N N 6 8I4 C2 C1 SING N N 7 8I4 C1 C7 SING N N 8 8I4 C5 C7 SING N N 9 8I4 C5 C6 SING N N 10 8I4 O6A C6 DOUB N N 11 8I4 C6 O6B SING N N 12 8I4 C3 H3 SING N N 13 8I4 C5 H5 SING N N 14 8I4 O3 HO3 SING N N 15 8I4 O4 HO4 SING N N 16 8I4 C1 H1 SING N N 17 8I4 C2 H2 SING N N 18 8I4 C4 H4 SING N N 19 8I4 C7 H7 SING N N 20 8I4 O2 HO2 SING N N 21 8I4 O6B HO6B SING N N 22 8I4 C1 O1 SING N N 23 8I4 O1 HO1 SING N N 24 8I4 C7 O7 SING N N 25 8I4 O7 HO7 SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8I4 InChI InChI 1.06 "InChI=1S/C7H12O7/c8-2-1(7(13)14)3(9)5(11)6(12)4(2)10/h1-6,8-12H,(H,13,14)/t1-,2-,3?,4+,5+,6-/m1/s1" 8I4 InChIKey InChI 1.06 FMRFYBAGJDOHAJ-ZREPEFIBSA-N 8I4 SMILES_CANONICAL CACTVS 3.385 "O[C@@H]1[C@@H](O)[C@H](O)[C@H]([C@@H](O)[C@@H]1O)C(O)=O" 8I4 SMILES CACTVS 3.385 "O[CH]1[CH](O)[CH](O)[CH]([CH](O)[CH]1O)C(O)=O" 8I4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[C@H]1([C@@H](C([C@H]([C@@H](C1C(=O)O)O)O)O)O)O" 8I4 SMILES "OpenEye OEToolkits" 2.0.7 "C1(C(C(C(C(C1O)O)O)O)O)C(=O)O" # _pdbx_chem_comp_identifier.comp_id 8I4 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{S},5~{S},6~{S})-2,3,4,5,6-pentakis(oxidanyl)cyclohexane-1-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8I4 "Create component" 2021-09-16 PDBE 8I4 "Modify leaving atom flag" 2021-09-26 PDBE 8I4 "Modify linking type" 2021-09-26 PDBE 8I4 "Modify leaving atom flag" 2021-09-29 PDBE 8I4 "Modify linking type" 2021-10-03 PDBE 8I4 "Initial release" 2022-08-03 RCSB 8I4 "Modify descriptor" 2022-08-22 RCSB 8I4 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 8I4 _pdbx_chem_comp_pcm.modified_residue_id GLU _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Carbohydrate _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OE2 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #